1HKOA

Nmr structure of bovine cytochrome b5
Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
104
structure length
104
Chain Sequence
AEESSKAVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDDRSKITKPSESIITTIDS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (9-11)TIV1 (8-11)TI4 (84-87)AH1 (13-18)EMPTYS3 (24-29)S2 (20-21)3H1 (36-38)TIV8 (53-56)S5 (56-57)TIV3 (28-31)AH3 (58-63)S6 (79-83)S4 (32-35)TI3 (76-79)TIV5 (39-42)AH4 (69-76)TI6 (88-91)TIV9 (85-88)TIV10 (89-92)AH2 (47-52)TI2 (63-66)Updating...
connected with : NaN
molecule tags Electron transport
source organism Bos taurus
publication title The Solution Structure of Bovine Ferricytochrome B5 Determined Using Heteronuclear NMR Methods.
pubmed doi rcsb
molecule keywords CYTOCHROME B5
total genus 20
structure length 104
sequence length 104
ec nomenclature
pdb deposition date 2003-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1hkoA00
1IEUA 1LJ0A 2AXXA 1M20A 1X3XA 1T0GA 3OZZB 1FCBA 3X32A 4B8NA 1AW3A 2I96A 1ES1A 1EHBA 1SH4A 1I87A 1LTDA 1M59A 1BLVA 1U9MA 1CYOA 2KEOA 1IETA 2OZ0A 1I8CA 1M2IA 1LDCA 1F04A 1AQAA 1DO9A 1ICCA 1AWPA 1KBIA 1HKOA 1B5AA 1MJ4A 3X34A 1SOXA 1CXYA 1U9UA 1I5UA 1LCOA 2IBJA 4X8YA 3X35A 1M2MA 1MNYA 1BFXA 4HILA 2I89A 1J0QA 1LR6A 1AXXA 1IB7A 1B5BA 1JEXA 3LF5A 1B5MA 1NX7A 1F03A 1LQXA 2M33A 3NERA 4HINA 3X33A 1EUEA 3MUSA 1J03A 3KS0A
chains in the Genus database with same CATH superfamily
1IEUA 1LJ0A 2AXXA 1M20A 1X3XA 1T0GA 3OZZB 1FCBA 3X32A 4B8NA 1AW3A 2I96A 1ES1A 1EHBA 1SH4A 1I87A 1LTDA 1M59A 1BLVA 1U9MA 1CYOA 2KEOA 1IETA 2OZ0A 1I8CA 1M2IA 1LDCA 1F04A 1AQAA 1DO9A 1ICCA 1AWPA 1KBIA 1HKOA 1B5AA 1MJ4A 3X34A 1SOXA 1CXYA 1U9UA 1I5UA 1LCOA 2IBJA 4X8YA 3X35A 1M2MA 1MNYA 1BFXA 4HILA 2I89A 1J0QA 1LR6A 1AXXA 1IB7A 1B5BA 1JEXA 3LF5A 1B5MA 1NX7A 1F03A 1LQXA 2M33A 3NERA 4HINA 3X33A 1EUEA 3MUSA 1J03A 3KS0A
chains in the Genus database with same CATH topology
1IEUA 1LJ0A 2AXXA 1M20A 1X3XA 1T0GA 3OZZB 1FCBA 3X32A 4B8NA 1AW3A 2I96A 1ES1A 1EHBA 1SH4A 1I87A 1LTDA 1M59A 1BLVA 1U9MA 1CYOA 2KEOA 1IETA 2OZ0A 1I8CA 1M2IA 1LDCA 1F04A 1AQAA 1DO9A 1ICCA 1AWPA 1KBIA 1HKOA 1B5AA 1MJ4A 3X34A 1SOXA 1CXYA 1U9UA 1I5UA 1LCOA 2IBJA 4X8YA 3X35A 1M2MA 1MNYA 1BFXA 4HILA 2I89A 1J0QA 1LR6A 1AXXA 1IB7A 1B5BA 1JEXA 3LF5A 1B5MA 1NX7A 1F03A 1LQXA 2M33A 3NERA 4HINA 3X33A 1EUEA 3MUSA 1J03A 3KS0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IEU A;  1LJ0 A;  2AXX A;  1M20 A;  1X3X A;  1T0G A;  3OZZ B;  1FCB A;  3X32 A;  4B8N A;  1AW3 A;  2I96 A;  1ES1 A;  1EHB A;  1SH4 A;  1I87 A;  1LTD A;  1M59 A;  1BLV A;  1U9M A;  1CYO A;  2KEO A;  1IET A;  2OZ0 A;  1I8C A;  1M2I A;  1LDC A;  1F04 A;  1AQA A;  1DO9 A;  1ICC A;  1AWP A;  1KBI A;  1HKO A;  1B5A A;  1MJ4 A;  3X34 A;  1SOX A;  1CXY A;  1U9U A;  1I5U A;  1LCO A;  2IBJ A;  4X8Y A;  3X35 A;  1M2M A;  1MNY A;  1BFX A;  4HIL A;  2I89 A;  1J0Q A;  1LR6 A;  1AXX A;  1IB7 A;  1B5B A;  1JEX A;  3LF5 A;  1B5M A;  1NX7 A;  1F03 A;  1LQX A;  2M33 A;  3NER A;  4HIN A;  3X33 A;  1EUE A;  3MUS A;  1J03 A;  3KS0 A; 
#chains in the Genus database with same CATH topology
 1IEU A;  1LJ0 A;  2AXX A;  1M20 A;  1X3X A;  1T0G A;  3OZZ B;  1FCB A;  3X32 A;  4B8N A;  1AW3 A;  2I96 A;  1ES1 A;  1EHB A;  1SH4 A;  1I87 A;  1LTD A;  1M59 A;  1BLV A;  1U9M A;  1CYO A;  2KEO A;  1IET A;  2OZ0 A;  1I8C A;  1M2I A;  1LDC A;  1F04 A;  1AQA A;  1DO9 A;  1ICC A;  1AWP A;  1KBI A;  1HKO A;  1B5A A;  1MJ4 A;  3X34 A;  1SOX A;  1CXY A;  1U9U A;  1I5U A;  1LCO A;  2IBJ A;  4X8Y A;  3X35 A;  1M2M A;  1MNY A;  1BFX A;  4HIL A;  2I89 A;  1J0Q A;  1LR6 A;  1AXX A;  1IB7 A;  1B5B A;  1JEX A;  3LF5 A;  1B5M A;  1NX7 A;  1F03 A;  1LQX A;  2M33 A;  3NER A;  4HIN A;  3X33 A;  1EUE A;  3MUS A;  1J03 A;  3KS0 A; 
#chains in the Genus database with same CATH homology
 1IEU A;  1LJ0 A;  2AXX A;  1M20 A;  1X3X A;  1T0G A;  3OZZ B;  1FCB A;  3X32 A;  4B8N A;  1AW3 A;  2I96 A;  1ES1 A;  1EHB A;  1SH4 A;  1I87 A;  1LTD A;  1M59 A;  1BLV A;  1U9M A;  1CYO A;  2KEO A;  1IET A;  2OZ0 A;  1I8C A;  1M2I A;  1LDC A;  1F04 A;  1AQA A;  1DO9 A;  1ICC A;  1AWP A;  1KBI A;  1HKO A;  1B5A A;  1MJ4 A;  3X34 A;  1SOX A;  1CXY A;  1U9U A;  1I5U A;  1LCO A;  2IBJ A;  4X8Y A;  3X35 A;  1M2M A;  1MNY A;  1BFX A;  4HIL A;  2I89 A;  1J0Q A;  1LR6 A;  1AXX A;  1IB7 A;  1B5B A;  1JEX A;  3LF5 A;  1B5M A;  1NX7 A;  1F03 A;  1LQX A;  2M33 A;  3NER A;  4HIN A;  3X33 A;  1EUE A;  3MUS A;  1J03 A;  3KS0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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