1I5U | Genus

Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	28
sequence length	82
structure length	82
Chain Sequence	AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLRAQAGGDATANFEAVGHSTDARELSKTFIIGELHPDDR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 82 atoms

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82 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Effects of charged amino-acid mutation on the solution structure of cytochrome b(5) and binding between cytochrome b(5) and cytochrome c. pubmed doi rcsb
molecule keywords	CYTOCHROME B5
molecule tags	Electron transport
source organism	Bos taurus
total genus	28
structure length	82
sequence length	82
ec nomenclature
pdb deposition date	2001-02-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00173	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.120.10	Alpha Beta	Roll	Flavocytochrome B2; Chain A, domain 1	Cytochrome b5-like heme/steroid binding domain	1i5uA00

3X34A 1FCBA 1B5MA 3MUSA 2AXXA 1AXXA 1MNYA 3X35A 1BLVA 1B5BA 2OZ0A 3OZZB 1AWPA 1I8CA 1ES1A 1LTDA 1CYOA 1LCOA 2I89A 1DO9A 1B5AA 1I87A 2KEOA 3LF5A 1AW3A 1LJ0A 1JEXA 1CXYA 3X33A 1J03A 1MJ4A 1IEUA 1F04A 1LR6A 1NX7A 2I96A 1BFXA 4HILA 1M59A 1EUEA 1M2IA 1F03A 1KBIA 2IBJA 3NERA 1LQXA 3KS0A 1X3XA 1IETA 4X8YA 1SOXA 1IB7A 1M2MA 1SH4A 1M20A 4HINA 1HKOA 1EHBA 2M33A 4B8NA 1I5UA 3X32A 1AQAA 1ICCA 1T0GA 1LDCA 1U9UA 1J0QA 1U9MA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3X34 A;  1FCB A;  1B5M A;  3MUS A;  2AXX A;  1AXX A;  1MNY A;  3X35 A;  1BLV A;  1B5B A;  2OZ0 A;  3OZZ B;  1AWP A;  1I8C A;  1ES1 A;  1LTD A;  1CYO A;  1LCO A;  2I89 A;  1DO9 A;  1B5A A;  1I87 A;  2KEO A;  3LF5 A;  1AW3 A;  1LJ0 A;  1JEX A;  1CXY A;  3X33 A;  1J03 A;  1MJ4 A;  1IEU A;  1F04 A;  1LR6 A;  1NX7 A;  2I96 A;  1BFX A;  4HIL A;  1M59 A;  1EUE A;  1M2I A;  1F03 A;  1KBI A;  2IBJ A;  3NER A;  1LQX A;  3KS0 A;  1X3X A;  1IET A;  4X8Y A;  1SOX A;  1IB7 A;  1M2M A;  1SH4 A;  1M20 A;  4HIN A;  1HKO A;  1EHB A;  2M33 A;  4B8N A;  1I5U A;  3X32 A;  1AQA A;  1ICC A;  1T0G A;  1LDC A;  1U9U A;  1J0Q A;  1U9M A; 
#chains in the Genus database with same CATH topology
 3X34 A;  1FCB A;  1B5M A;  3MUS A;  2AXX A;  1AXX A;  1MNY A;  3X35 A;  1BLV A;  1B5B A;  2OZ0 A;  3OZZ B;  1AWP A;  1I8C A;  1ES1 A;  1LTD A;  1CYO A;  1LCO A;  2I89 A;  1DO9 A;  1B5A A;  1I87 A;  2KEO A;  3LF5 A;  1AW3 A;  1LJ0 A;  1JEX A;  1CXY A;  3X33 A;  1J03 A;  1MJ4 A;  1IEU A;  1F04 A;  1LR6 A;  1NX7 A;  2I96 A;  1BFX A;  4HIL A;  1M59 A;  1EUE A;  1M2I A;  1F03 A;  1KBI A;  2IBJ A;  3NER A;  1LQX A;  3KS0 A;  1X3X A;  1IET A;  4X8Y A;  1SOX A;  1IB7 A;  1M2M A;  1SH4 A;  1M20 A;  4HIN A;  1HKO A;  1EHB A;  2M33 A;  4B8N A;  1I5U A;  3X32 A;  1AQA A;  1ICC A;  1T0G A;  1LDC A;  1U9U A;  1J0Q A;  1U9M A; 
#chains in the Genus database with same CATH homology
 3X34 A;  1FCB A;  1B5M A;  3MUS A;  2AXX A;  1AXX A;  1MNY A;  3X35 A;  1BLV A;  1B5B A;  2OZ0 A;  3OZZ B;  1AWP A;  1I8C A;  1ES1 A;  1LTD A;  1CYO A;  1LCO A;  2I89 A;  1DO9 A;  1B5A A;  1I87 A;  2KEO A;  3LF5 A;  1AW3 A;  1LJ0 A;  1JEX A;  1CXY A;  3X33 A;  1J03 A;  1MJ4 A;  1IEU A;  1F04 A;  1LR6 A;  1NX7 A;  2I96 A;  1BFX A;  4HIL A;  1M59 A;  1EUE A;  1M2I A;  1F03 A;  1KBI A;  2IBJ A;  3NER A;  1LQX A;  3KS0 A;  1X3X A;  1IET A;  4X8Y A;  1SOX A;  1IB7 A;  1M2M A;  1SH4 A;  1M20 A;  4HIN A;  1HKO A;  1EHB A;  2M33 A;  4B8N A;  1I5U A;  3X32 A;  1AQA A;  1ICC A;  1T0G A;  1LDC A;  1U9U A;  1J0Q A;  1U9M A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1I5UA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations