1IB7 | Genus

Total Genus 13

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	13
sequence length	85
structure length	85
Chain Sequence	VKYYTLEEIQKHKDSKSTWVILHHKVYDLTKYLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHPDDRSKIA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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85 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Electron transport
source organism	Rattus rattus
publication title	MUTAGENIC MODULATION OF THE ENTROPY CHANGE ON OXIDATION OF CYTOCHROME B5: AN ANALYSIS OF THE CONTRIBUTION OF CONFORMATIONAL ENTROPY rcsb
molecule keywords	CYTOCHROME B5
total genus	13
structure length	85
sequence length	85
ec nomenclature
pdb deposition date	2001-03-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00173	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.120.10	Alpha Beta	Roll	Flavocytochrome B2; Chain A, domain 1	Cytochrome b5-like heme/steroid binding domain	1ib7A00

2IBJA 1M59A 1U9UA 1KBIA 3X35A 1IEUA 1DO9A 2M33A 1ES1A 2I96A 1HKOA 1FCBA 1U9MA 1LQXA 1LJ0A 4B8NA 1AWPA 2AXXA 3NERA 1M2IA 1J03A 1AW3A 1M2MA 1X3XA 1IB7A 2I89A 1M20A 1SOXA 1B5AA 1J0QA 3X33A 1B5MA 1I8CA 1I87A 3X34A 1AXXA 4X8YA 1ICCA 2OZ0A 1F04A 1LR6A 1NX7A 1T0GA 2KEOA 3MUSA 4HINA 1MNYA 1EUEA 1LDCA 1SH4A 1JEXA 1LCOA 1BFXA 1B5BA 1IETA 1AQAA 3KS0A 3OZZB 1F03A 1CYOA 1EHBA 3X32A 1CXYA 1BLVA 1I5UA 1LTDA 4HILA 3LF5A 1MJ4A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2IBJ A;  1M59 A;  1U9U A;  1KBI A;  3X35 A;  1IEU A;  1DO9 A;  2M33 A;  1ES1 A;  2I96 A;  1HKO A;  1FCB A;  1U9M A;  1LQX A;  1LJ0 A;  4B8N A;  1AWP A;  2AXX A;  3NER A;  1M2I A;  1J03 A;  1AW3 A;  1M2M A;  1X3X A;  1IB7 A;  2I89 A;  1M20 A;  1SOX A;  1B5A A;  1J0Q A;  3X33 A;  1B5M A;  1I8C A;  1I87 A;  3X34 A;  1AXX A;  4X8Y A;  1ICC A;  2OZ0 A;  1F04 A;  1LR6 A;  1NX7 A;  1T0G A;  2KEO A;  3MUS A;  4HIN A;  1MNY A;  1EUE A;  1LDC A;  1SH4 A;  1JEX A;  1LCO A;  1BFX A;  1B5B A;  1IET A;  1AQA A;  3KS0 A;  3OZZ B;  1F03 A;  1CYO A;  1EHB A;  3X32 A;  1CXY A;  1BLV A;  1I5U A;  1LTD A;  4HIL A;  3LF5 A;  1MJ4 A; 
#chains in the Genus database with same CATH topology
 2IBJ A;  1M59 A;  1U9U A;  1KBI A;  3X35 A;  1IEU A;  1DO9 A;  2M33 A;  1ES1 A;  2I96 A;  1HKO A;  1FCB A;  1U9M A;  1LQX A;  1LJ0 A;  4B8N A;  1AWP A;  2AXX A;  3NER A;  1M2I A;  1J03 A;  1AW3 A;  1M2M A;  1X3X A;  1IB7 A;  2I89 A;  1M20 A;  1SOX A;  1B5A A;  1J0Q A;  3X33 A;  1B5M A;  1I8C A;  1I87 A;  3X34 A;  1AXX A;  4X8Y A;  1ICC A;  2OZ0 A;  1F04 A;  1LR6 A;  1NX7 A;  1T0G A;  2KEO A;  3MUS A;  4HIN A;  1MNY A;  1EUE A;  1LDC A;  1SH4 A;  1JEX A;  1LCO A;  1BFX A;  1B5B A;  1IET A;  1AQA A;  3KS0 A;  3OZZ B;  1F03 A;  1CYO A;  1EHB A;  3X32 A;  1CXY A;  1BLV A;  1I5U A;  1LTD A;  4HIL A;  3LF5 A;  1MJ4 A; 
#chains in the Genus database with same CATH homology
 2IBJ A;  1M59 A;  1U9U A;  1KBI A;  3X35 A;  1IEU A;  1DO9 A;  2M33 A;  1ES1 A;  2I96 A;  1HKO A;  1FCB A;  1U9M A;  1LQX A;  1LJ0 A;  4B8N A;  1AWP A;  2AXX A;  3NER A;  1M2I A;  1J03 A;  1AW3 A;  1M2M A;  1X3X A;  1IB7 A;  2I89 A;  1M20 A;  1SOX A;  1B5A A;  1J0Q A;  3X33 A;  1B5M A;  1I8C A;  1I87 A;  3X34 A;  1AXX A;  4X8Y A;  1ICC A;  2OZ0 A;  1F04 A;  1LR6 A;  1NX7 A;  1T0G A;  2KEO A;  3MUS A;  4HIN A;  1MNY A;  1EUE A;  1LDC A;  1SH4 A;  1JEX A;  1LCO A;  1BFX A;  1B5B A;  1IET A;  1AQA A;  3KS0 A;  3OZZ B;  1F03 A;  1CYO A;  1EHB A;  3X32 A;  1CXY A;  1BLV A;  1I5U A;  1LTD A;  4HIL A;  3LF5 A;  1MJ4 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1IB7A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations