1ICCA

Rat outer mitochondrial membrane cytochrome b5
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
87
structure length
87
Chain Sequence
DPAVTYYRLEEVAKRNTSEETWMVIHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPDAREMLKQYYIGDVHPNDLKPK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TI1 (1-4)S1 (6-7)EMPTYS5 (75-79)AH1 (9-13)3H3 (81-83)S2 (16-17)TI2 (17-20)AH3 (54-61)S3 (20-25)TIV2 (24-27)S4 (28-31)TI3 (32-35)3H2 (72-74)3H1 (36-38)TI5 (39-42)AH2 (43-49)AH4 (65-71)TIV1 (13-16)TII1 (49-52)Updating...
connected with : NaN
molecule tags Electron transport
source organism Rattus norvegicus
publication title Probing the differences between rat liver outer mitochondrial membrane cytochrome b5 and microsomal cytochromes b5.
pubmed doi rcsb
molecule keywords CYTOCHROME B5 OUTER MITOCHONDRIAL MEMBRANE ISOFORM
total genus 26
structure length 87
sequence length 87
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2001-03-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1iccA00
3KS0A 1LQXA 1I5UA 1AW3A 4B8NA 1F03A 1NX7A 1AQAA 1ES1A 1LDCA 1M2MA 2I89A 3NERA 1AXXA 1F04A 1CXYA 1M20A 3MUSA 2M33A 1MNYA 3X35A 1B5AA 1MJ4A 3X34A 1LCOA 1HKOA 1U9MA 3OZZB 1LJ0A 4HILA 1LR6A 1I87A 1FCBA 1M2IA 1B5BA 1M59A 1IETA 1BLVA 1U9UA 1J03A 1CYOA 1EHBA 1I8CA 1ICCA 1AWPA 1SOXA 1X3XA 2OZ0A 1LTDA 1J0QA 1DO9A 1IEUA 1EUEA 1IB7A 1SH4A 2AXXA 1BFXA 1JEXA 2I96A 1B5MA 1KBIA 1T0GA 3LF5A 3X32A 4X8YA 2IBJA 2KEOA 4HINA 3X33A
chains in the Genus database with same CATH superfamily
3KS0A 1LQXA 1I5UA 1AW3A 4B8NA 1F03A 1NX7A 1AQAA 1ES1A 1LDCA 1M2MA 2I89A 3NERA 1AXXA 1F04A 1CXYA 1M20A 3MUSA 2M33A 1MNYA 3X35A 1B5AA 1MJ4A 3X34A 1LCOA 1HKOA 1U9MA 3OZZB 1LJ0A 4HILA 1LR6A 1I87A 1FCBA 1M2IA 1B5BA 1M59A 1IETA 1BLVA 1U9UA 1J03A 1CYOA 1EHBA 1I8CA 1ICCA 1AWPA 1SOXA 1X3XA 2OZ0A 1LTDA 1J0QA 1DO9A 1IEUA 1EUEA 1IB7A 1SH4A 2AXXA 1BFXA 1JEXA 2I96A 1B5MA 1KBIA 1T0GA 3LF5A 3X32A 4X8YA 2IBJA 2KEOA 4HINA 3X33A
chains in the Genus database with same CATH topology
3KS0A 1LQXA 1I5UA 1AW3A 4B8NA 1F03A 1NX7A 1AQAA 1ES1A 1LDCA 1M2MA 2I89A 3NERA 1AXXA 1F04A 1CXYA 1M20A 3MUSA 2M33A 1MNYA 3X35A 1B5AA 1MJ4A 3X34A 1LCOA 1HKOA 1U9MA 3OZZB 1LJ0A 4HILA 1LR6A 1I87A 1FCBA 1M2IA 1B5BA 1M59A 1IETA 1BLVA 1U9UA 1J03A 1CYOA 1EHBA 1I8CA 1ICCA 1AWPA 1SOXA 1X3XA 2OZ0A 1LTDA 1J0QA 1DO9A 1IEUA 1EUEA 1IB7A 1SH4A 2AXXA 1BFXA 1JEXA 2I96A 1B5MA 1KBIA 1T0GA 3LF5A 3X32A 4X8YA 2IBJA 2KEOA 4HINA 3X33A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KS0 A;  1LQX A;  1I5U A;  1AW3 A;  4B8N A;  1F03 A;  1NX7 A;  1AQA A;  1ES1 A;  1LDC A;  1M2M A;  2I89 A;  3NER A;  1AXX A;  1F04 A;  1CXY A;  1M20 A;  3MUS A;  2M33 A;  1MNY A;  3X35 A;  1B5A A;  1MJ4 A;  3X34 A;  1LCO A;  1HKO A;  1U9M A;  3OZZ B;  1LJ0 A;  4HIL A;  1LR6 A;  1I87 A;  1FCB A;  1M2I A;  1B5B A;  1M59 A;  1IET A;  1BLV A;  1U9U A;  1J03 A;  1CYO A;  1EHB A;  1I8C A;  1ICC A;  1AWP A;  1SOX A;  1X3X A;  2OZ0 A;  1LTD A;  1J0Q A;  1DO9 A;  1IEU A;  1EUE A;  1IB7 A;  1SH4 A;  2AXX A;  1BFX A;  1JEX A;  2I96 A;  1B5M A;  1KBI A;  1T0G A;  3LF5 A;  3X32 A;  4X8Y A;  2IBJ A;  2KEO A;  4HIN A;  3X33 A; 
#chains in the Genus database with same CATH topology
 3KS0 A;  1LQX A;  1I5U A;  1AW3 A;  4B8N A;  1F03 A;  1NX7 A;  1AQA A;  1ES1 A;  1LDC A;  1M2M A;  2I89 A;  3NER A;  1AXX A;  1F04 A;  1CXY A;  1M20 A;  3MUS A;  2M33 A;  1MNY A;  3X35 A;  1B5A A;  1MJ4 A;  3X34 A;  1LCO A;  1HKO A;  1U9M A;  3OZZ B;  1LJ0 A;  4HIL A;  1LR6 A;  1I87 A;  1FCB A;  1M2I A;  1B5B A;  1M59 A;  1IET A;  1BLV A;  1U9U A;  1J03 A;  1CYO A;  1EHB A;  1I8C A;  1ICC A;  1AWP A;  1SOX A;  1X3X A;  2OZ0 A;  1LTD A;  1J0Q A;  1DO9 A;  1IEU A;  1EUE A;  1IB7 A;  1SH4 A;  2AXX A;  1BFX A;  1JEX A;  2I96 A;  1B5M A;  1KBI A;  1T0G A;  3LF5 A;  3X32 A;  4X8Y A;  2IBJ A;  2KEO A;  4HIN A;  3X33 A; 
#chains in the Genus database with same CATH homology
 3KS0 A;  1LQX A;  1I5U A;  1AW3 A;  4B8N A;  1F03 A;  1NX7 A;  1AQA A;  1ES1 A;  1LDC A;  1M2M A;  2I89 A;  3NER A;  1AXX A;  1F04 A;  1CXY A;  1M20 A;  3MUS A;  2M33 A;  1MNY A;  3X35 A;  1B5A A;  1MJ4 A;  3X34 A;  1LCO A;  1HKO A;  1U9M A;  3OZZ B;  1LJ0 A;  4HIL A;  1LR6 A;  1I87 A;  1FCB A;  1M2I A;  1B5B A;  1M59 A;  1IET A;  1BLV A;  1U9U A;  1J03 A;  1CYO A;  1EHB A;  1I8C A;  1ICC A;  1AWP A;  1SOX A;  1X3X A;  2OZ0 A;  1LTD A;  1J0Q A;  1DO9 A;  1IEU A;  1EUE A;  1IB7 A;  1SH4 A;  2AXX A;  1BFX A;  1JEX A;  2I96 A;  1B5M A;  1KBI A;  1T0G A;  3LF5 A;  3X32 A;  4X8Y A;  2IBJ A;  2KEO A;  4HIN A;  3X33 A; 
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