1IEU | Genus

Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	7
sequence length	94
structure length	94
Chain Sequence	DKDVKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGELHPDDRSKIAKPSETL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 94 atoms

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94 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Electron transport
source organism	Rattus norvegicus
publication title	Design challenges for hemoproteins: the solution structure of apocytochrome b5. pubmed doi rcsb
molecule keywords	APOCYTOCHROME B5
total genus	7
structure length	94
sequence length	94
ec nomenclature
pdb deposition date	1996-04-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00173	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.120.10	Alpha Beta	Roll	Flavocytochrome B2; Chain A, domain 1	Cytochrome b5-like heme/steroid binding domain	1ieuA00

1AXXA 1BLVA 2OZ0A 4B8NA 1CXYA 3X34A 1HKOA 1I87A 1MJ4A 1LTDA 2I96A 1B5AA 1I5UA 1EHBA 1X3XA 1LDCA 1M2IA 3NERA 1U9MA 3KS0A 1F03A 1CYOA 1SOXA 1ES1A 1M59A 1U9UA 1LCOA 2I89A 1LR6A 1AQAA 2AXXA 3X33A 4X8YA 4HINA 3X35A 1AW3A 1JEXA 1J03A 1J0QA 1T0GA 1ICCA 1IB7A 3MUSA 1AWPA 4HILA 1BFXA 1M2MA 2IBJA 1IETA 1KBIA 1DO9A 1M20A 1B5BA 1MNYA 2M33A 3X32A 1EUEA 1F04A 1I8CA 1FCBA 2KEOA 1SH4A 3LF5A 1LJ0A 3OZZB 1IEUA 1B5MA 1LQXA 1NX7A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1AXX A;  1BLV A;  2OZ0 A;  4B8N A;  1CXY A;  3X34 A;  1HKO A;  1I87 A;  1MJ4 A;  1LTD A;  2I96 A;  1B5A A;  1I5U A;  1EHB A;  1X3X A;  1LDC A;  1M2I A;  3NER A;  1U9M A;  3KS0 A;  1F03 A;  1CYO A;  1SOX A;  1ES1 A;  1M59 A;  1U9U A;  1LCO A;  2I89 A;  1LR6 A;  1AQA A;  2AXX A;  3X33 A;  4X8Y A;  4HIN A;  3X35 A;  1AW3 A;  1JEX A;  1J03 A;  1J0Q A;  1T0G A;  1ICC A;  1IB7 A;  3MUS A;  1AWP A;  4HIL A;  1BFX A;  1M2M A;  2IBJ A;  1IET A;  1KBI A;  1DO9 A;  1M20 A;  1B5B A;  1MNY A;  2M33 A;  3X32 A;  1EUE A;  1F04 A;  1I8C A;  1FCB A;  2KEO A;  1SH4 A;  3LF5 A;  1LJ0 A;  3OZZ B;  1IEU A;  1B5M A;  1LQX A;  1NX7 A; 
#chains in the Genus database with same CATH topology
 1AXX A;  1BLV A;  2OZ0 A;  4B8N A;  1CXY A;  3X34 A;  1HKO A;  1I87 A;  1MJ4 A;  1LTD A;  2I96 A;  1B5A A;  1I5U A;  1EHB A;  1X3X A;  1LDC A;  1M2I A;  3NER A;  1U9M A;  3KS0 A;  1F03 A;  1CYO A;  1SOX A;  1ES1 A;  1M59 A;  1U9U A;  1LCO A;  2I89 A;  1LR6 A;  1AQA A;  2AXX A;  3X33 A;  4X8Y A;  4HIN A;  3X35 A;  1AW3 A;  1JEX A;  1J03 A;  1J0Q A;  1T0G A;  1ICC A;  1IB7 A;  3MUS A;  1AWP A;  4HIL A;  1BFX A;  1M2M A;  2IBJ A;  1IET A;  1KBI A;  1DO9 A;  1M20 A;  1B5B A;  1MNY A;  2M33 A;  3X32 A;  1EUE A;  1F04 A;  1I8C A;  1FCB A;  2KEO A;  1SH4 A;  3LF5 A;  1LJ0 A;  3OZZ B;  1IEU A;  1B5M A;  1LQX A;  1NX7 A; 
#chains in the Genus database with same CATH homology
 1AXX A;  1BLV A;  2OZ0 A;  4B8N A;  1CXY A;  3X34 A;  1HKO A;  1I87 A;  1MJ4 A;  1LTD A;  2I96 A;  1B5A A;  1I5U A;  1EHB A;  1X3X A;  1LDC A;  1M2I A;  3NER A;  1U9M A;  3KS0 A;  1F03 A;  1CYO A;  1SOX A;  1ES1 A;  1M59 A;  1U9U A;  1LCO A;  2I89 A;  1LR6 A;  1AQA A;  2AXX A;  3X33 A;  4X8Y A;  4HIN A;  3X35 A;  1AW3 A;  1JEX A;  1J03 A;  1J0Q A;  1T0G A;  1ICC A;  1IB7 A;  3MUS A;  1AWP A;  4HIL A;  1BFX A;  1M2M A;  2IBJ A;  1IET A;  1KBI A;  1DO9 A;  1M20 A;  1B5B A;  1MNY A;  2M33 A;  3X32 A;  1EUE A;  1F04 A;  1I8C A;  1FCB A;  2KEO A;  1SH4 A;  3LF5 A;  1LJ0 A;  3OZZ B;  1IEU A;  1B5M A;  1LQX A;  1NX7 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1IEUA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations