1J0Q | Genus

Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	24
sequence length	82
structure length	82
Chain Sequence	AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGHSTDARELSKTFIIGELHPDDR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 82 atoms

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82 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Electron transport
source organism	Bos taurus
publication title	The solution structure of the oxidized bovine microsomal cytochrome b5 mutant V61H pubmed doi rcsb
molecule keywords	cytochrome b5
total genus	24
structure length	82
sequence length	82
ec nomenclature
pdb deposition date	2002-11-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00173	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.120.10	Alpha Beta	Roll	Flavocytochrome B2; Chain A, domain 1	Cytochrome b5-like heme/steroid binding domain	1j0qA00

1EHBA 1LJ0A 1BLVA 1CYOA 2IBJA 1I87A 1IEUA 3KS0A 1B5AA 3OZZB 2AXXA 1SH4A 2I96A 4HILA 1F04A 1MJ4A 1AXXA 3NERA 1U9MA 1KBIA 1AW3A 1U9UA 3X33A 4B8NA 1LCOA 2I89A 1B5MA 3LF5A 1LR6A 1X3XA 2M33A 1SOXA 1J0QA 1LQXA 4HINA 1ES1A 1NX7A 4X8YA 3X35A 1IB7A 1T0GA 1F03A 3X34A 1DO9A 1I5UA 2KEOA 1AQAA 1LDCA 1IETA 1M2IA 1M59A 1HKOA 1JEXA 1AWPA 1LTDA 1MNYA 1FCBA 1EUEA 1J03A 2OZ0A 1B5BA 1M2MA 1BFXA 3MUSA 1I8CA 1M20A 3X32A 1CXYA 1ICCA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1EHB A;  1LJ0 A;  1BLV A;  1CYO A;  2IBJ A;  1I87 A;  1IEU A;  3KS0 A;  1B5A A;  3OZZ B;  2AXX A;  1SH4 A;  2I96 A;  4HIL A;  1F04 A;  1MJ4 A;  1AXX A;  3NER A;  1U9M A;  1KBI A;  1AW3 A;  1U9U A;  3X33 A;  4B8N A;  1LCO A;  2I89 A;  1B5M A;  3LF5 A;  1LR6 A;  1X3X A;  2M33 A;  1SOX A;  1J0Q A;  1LQX A;  4HIN A;  1ES1 A;  1NX7 A;  4X8Y A;  3X35 A;  1IB7 A;  1T0G A;  1F03 A;  3X34 A;  1DO9 A;  1I5U A;  2KEO A;  1AQA A;  1LDC A;  1IET A;  1M2I A;  1M59 A;  1HKO A;  1JEX A;  1AWP A;  1LTD A;  1MNY A;  1FCB A;  1EUE A;  1J03 A;  2OZ0 A;  1B5B A;  1M2M A;  1BFX A;  3MUS A;  1I8C A;  1M20 A;  3X32 A;  1CXY A;  1ICC A; 
#chains in the Genus database with same CATH topology
 1EHB A;  1LJ0 A;  1BLV A;  1CYO A;  2IBJ A;  1I87 A;  1IEU A;  3KS0 A;  1B5A A;  3OZZ B;  2AXX A;  1SH4 A;  2I96 A;  4HIL A;  1F04 A;  1MJ4 A;  1AXX A;  3NER A;  1U9M A;  1KBI A;  1AW3 A;  1U9U A;  3X33 A;  4B8N A;  1LCO A;  2I89 A;  1B5M A;  3LF5 A;  1LR6 A;  1X3X A;  2M33 A;  1SOX A;  1J0Q A;  1LQX A;  4HIN A;  1ES1 A;  1NX7 A;  4X8Y A;  3X35 A;  1IB7 A;  1T0G A;  1F03 A;  3X34 A;  1DO9 A;  1I5U A;  2KEO A;  1AQA A;  1LDC A;  1IET A;  1M2I A;  1M59 A;  1HKO A;  1JEX A;  1AWP A;  1LTD A;  1MNY A;  1FCB A;  1EUE A;  1J03 A;  2OZ0 A;  1B5B A;  1M2M A;  1BFX A;  3MUS A;  1I8C A;  1M20 A;  3X32 A;  1CXY A;  1ICC A; 
#chains in the Genus database with same CATH homology
 1EHB A;  1LJ0 A;  1BLV A;  1CYO A;  2IBJ A;  1I87 A;  1IEU A;  3KS0 A;  1B5A A;  3OZZ B;  2AXX A;  1SH4 A;  2I96 A;  4HIL A;  1F04 A;  1MJ4 A;  1AXX A;  3NER A;  1U9M A;  1KBI A;  1AW3 A;  1U9U A;  3X33 A;  4B8N A;  1LCO A;  2I89 A;  1B5M A;  3LF5 A;  1LR6 A;  1X3X A;  2M33 A;  1SOX A;  1J0Q A;  1LQX A;  4HIN A;  1ES1 A;  1NX7 A;  4X8Y A;  3X35 A;  1IB7 A;  1T0G A;  1F03 A;  3X34 A;  1DO9 A;  1I5U A;  2KEO A;  1AQA A;  1LDC A;  1IET A;  1M2I A;  1M59 A;  1HKO A;  1JEX A;  1AWP A;  1LTD A;  1MNY A;  1FCB A;  1EUE A;  1J03 A;  2OZ0 A;  1B5B A;  1M2M A;  1BFX A;  3MUS A;  1I8C A;  1M20 A;  3X32 A;  1CXY A;  1ICC A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1J0QA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations