1JEX | Genus

Total Genus 7

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	7
sequence length	85
structure length	85
Chain Sequence	VKYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDVRELSKTYIIGELHPDDRSKIA

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 85 atoms

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85 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	MUTAGENIC MODULATION OF THE ENTROPY CHANGE ON OXIDATION OF CYTOCHROME B5: AN ANALYSIS OF THE CONTRIBUTION OF CONFORMATIONAL ENTROPY rcsb
molecule keywords	CYTOCHROME B5
molecule tags	Electron transport
source organism	Rattus norvegicus
total genus	7
structure length	85
sequence length	85
ec nomenclature
pdb deposition date	2001-06-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00173	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.120.10	Alpha Beta	Roll	Flavocytochrome B2; Chain A, domain 1	Cytochrome b5-like heme/steroid binding domain	1jexA00

2OZ0A 1U9MA 3KS0A 3NERA 4HINA 1DO9A 1IEUA 1KBIA 1SH4A 3LF5A 4B8NA 3X33A 1B5MA 1CYOA 2IBJA 1MNYA 1AW3A 1U9UA 1F03A 1T0GA 2I96A 2I89A 1LQXA 4X8YA 1ICCA 1AXXA 4HILA 1EHBA 1BLVA 3OZZB 1I5UA 1EUEA 1M2MA 3MUSA 1J03A 3X35A 1CXYA 3X32A 1IETA 1AQAA 1I87A 1MJ4A 1I8CA 1ES1A 1LJ0A 1LR6A 1LDCA 2AXXA 1AWPA 1LTDA 1FCBA 2M33A 1BFXA 1NX7A 1LCOA 1HKOA 3X34A 1B5AA 1SOXA 1B5BA 1M2IA 1X3XA 1F04A 1JEXA 1IB7A 1J0QA 1M59A 1M20A 2KEOA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2OZ0 A;  1U9M A;  3KS0 A;  3NER A;  4HIN A;  1DO9 A;  1IEU A;  1KBI A;  1SH4 A;  3LF5 A;  4B8N A;  3X33 A;  1B5M A;  1CYO A;  2IBJ A;  1MNY A;  1AW3 A;  1U9U A;  1F03 A;  1T0G A;  2I96 A;  2I89 A;  1LQX A;  4X8Y A;  1ICC A;  1AXX A;  4HIL A;  1EHB A;  1BLV A;  3OZZ B;  1I5U A;  1EUE A;  1M2M A;  3MUS A;  1J03 A;  3X35 A;  1CXY A;  3X32 A;  1IET A;  1AQA A;  1I87 A;  1MJ4 A;  1I8C A;  1ES1 A;  1LJ0 A;  1LR6 A;  1LDC A;  2AXX A;  1AWP A;  1LTD A;  1FCB A;  2M33 A;  1BFX A;  1NX7 A;  1LCO A;  1HKO A;  3X34 A;  1B5A A;  1SOX A;  1B5B A;  1M2I A;  1X3X A;  1F04 A;  1JEX A;  1IB7 A;  1J0Q A;  1M59 A;  1M20 A;  2KEO A; 
#chains in the Genus database with same CATH topology
 2OZ0 A;  1U9M A;  3KS0 A;  3NER A;  4HIN A;  1DO9 A;  1IEU A;  1KBI A;  1SH4 A;  3LF5 A;  4B8N A;  3X33 A;  1B5M A;  1CYO A;  2IBJ A;  1MNY A;  1AW3 A;  1U9U A;  1F03 A;  1T0G A;  2I96 A;  2I89 A;  1LQX A;  4X8Y A;  1ICC A;  1AXX A;  4HIL A;  1EHB A;  1BLV A;  3OZZ B;  1I5U A;  1EUE A;  1M2M A;  3MUS A;  1J03 A;  3X35 A;  1CXY A;  3X32 A;  1IET A;  1AQA A;  1I87 A;  1MJ4 A;  1I8C A;  1ES1 A;  1LJ0 A;  1LR6 A;  1LDC A;  2AXX A;  1AWP A;  1LTD A;  1FCB A;  2M33 A;  1BFX A;  1NX7 A;  1LCO A;  1HKO A;  3X34 A;  1B5A A;  1SOX A;  1B5B A;  1M2I A;  1X3X A;  1F04 A;  1JEX A;  1IB7 A;  1J0Q A;  1M59 A;  1M20 A;  2KEO A; 
#chains in the Genus database with same CATH homology
 2OZ0 A;  1U9M A;  3KS0 A;  3NER A;  4HIN A;  1DO9 A;  1IEU A;  1KBI A;  1SH4 A;  3LF5 A;  4B8N A;  3X33 A;  1B5M A;  1CYO A;  2IBJ A;  1MNY A;  1AW3 A;  1U9U A;  1F03 A;  1T0G A;  2I96 A;  2I89 A;  1LQX A;  4X8Y A;  1ICC A;  1AXX A;  4HIL A;  1EHB A;  1BLV A;  3OZZ B;  1I5U A;  1EUE A;  1M2M A;  3MUS A;  1J03 A;  3X35 A;  1CXY A;  3X32 A;  1IET A;  1AQA A;  1I87 A;  1MJ4 A;  1I8C A;  1ES1 A;  1LJ0 A;  1LR6 A;  1LDC A;  2AXX A;  1AWP A;  1LTD A;  1FCB A;  2M33 A;  1BFX A;  1NX7 A;  1LCO A;  1HKO A;  3X34 A;  1B5A A;  1SOX A;  1B5B A;  1M2I A;  1X3X A;  1F04 A;  1JEX A;  1IB7 A;  1J0Q A;  1M59 A;  1M20 A;  2KEO A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1JEXA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations