1LR6A

Crystal structure of v45y mutant of cytochrome b5
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
82
structure length
82
Chain Sequence
AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEYLREQAGGDATENFEDVGHSTDARELSKTFIIGELHPDDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
3H2 (81-83)S1 (6-7)AH1 (9-14)TI1 (17-20)S3 (20-25)EMPTYS2 (16-17)S4 (28-31)TIV1 (24-27)AH3 (54-61)S5 (75-79)3H1 (72-74)TI2 (32-35)TI3 (33-36)TI4 (35-38)TI6 (39-42)AH2 (43-48)TII1 (49-52)AH4 (65-71)Updating...
connected with : NaN
molecule tags Electron transport
source organism Bos taurus
publication title Structures of V45E and V45Y mutants and structure comparison of a variety of cytochrome b5 mutants.
pubmed doi rcsb
molecule keywords cytochrome b5
total genus 22
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2002-05-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1lr6A00
1LQXA 2I89A 1IETA 1MNYA 1M20A 3X33A 1LJ0A 1F04A 1AWPA 3OZZB 1HKOA 1EHBA 1BFXA 1M59A 1JEXA 1J0QA 1IEUA 1B5MA 1CYOA 2AXXA 4B8NA 1KBIA 4HILA 1ICCA 1CXYA 1T0GA 1ES1A 1SOXA 3NERA 1SH4A 1AXXA 2OZ0A 3KS0A 1BLVA 3X34A 2I96A 4HINA 4X8YA 1I87A 1MJ4A 1IB7A 1LDCA 1F03A 3X32A 1M2IA 1U9MA 1X3XA 1AW3A 1B5AA 1FCBA 2IBJA 3LF5A 3X35A 1LCOA 2KEOA 1M2MA 1AQAA 1B5BA 1NX7A 1I5UA 2M33A 3MUSA 1DO9A 1U9UA 1I8CA 1EUEA 1LR6A 1LTDA 1J03A
chains in the Genus database with same CATH superfamily
1LQXA 2I89A 1IETA 1MNYA 1M20A 3X33A 1LJ0A 1F04A 1AWPA 3OZZB 1HKOA 1EHBA 1BFXA 1M59A 1JEXA 1J0QA 1IEUA 1B5MA 1CYOA 2AXXA 4B8NA 1KBIA 4HILA 1ICCA 1CXYA 1T0GA 1ES1A 1SOXA 3NERA 1SH4A 1AXXA 2OZ0A 3KS0A 1BLVA 3X34A 2I96A 4HINA 4X8YA 1I87A 1MJ4A 1IB7A 1LDCA 1F03A 3X32A 1M2IA 1U9MA 1X3XA 1AW3A 1B5AA 1FCBA 2IBJA 3LF5A 3X35A 1LCOA 2KEOA 1M2MA 1AQAA 1B5BA 1NX7A 1I5UA 2M33A 3MUSA 1DO9A 1U9UA 1I8CA 1EUEA 1LR6A 1LTDA 1J03A
chains in the Genus database with same CATH topology
1LQXA 2I89A 1IETA 1MNYA 1M20A 3X33A 1LJ0A 1F04A 1AWPA 3OZZB 1HKOA 1EHBA 1BFXA 1M59A 1JEXA 1J0QA 1IEUA 1B5MA 1CYOA 2AXXA 4B8NA 1KBIA 4HILA 1ICCA 1CXYA 1T0GA 1ES1A 1SOXA 3NERA 1SH4A 1AXXA 2OZ0A 3KS0A 1BLVA 3X34A 2I96A 4HINA 4X8YA 1I87A 1MJ4A 1IB7A 1LDCA 1F03A 3X32A 1M2IA 1U9MA 1X3XA 1AW3A 1B5AA 1FCBA 2IBJA 3LF5A 3X35A 1LCOA 2KEOA 1M2MA 1AQAA 1B5BA 1NX7A 1I5UA 2M33A 3MUSA 1DO9A 1U9UA 1I8CA 1EUEA 1LR6A 1LTDA 1J03A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1LQX A;  2I89 A;  1IET A;  1MNY A;  1M20 A;  3X33 A;  1LJ0 A;  1F04 A;  1AWP A;  3OZZ B;  1HKO A;  1EHB A;  1BFX A;  1M59 A;  1JEX A;  1J0Q A;  1IEU A;  1B5M A;  1CYO A;  2AXX A;  4B8N A;  1KBI A;  4HIL A;  1ICC A;  1CXY A;  1T0G A;  1ES1 A;  1SOX A;  3NER A;  1SH4 A;  1AXX A;  2OZ0 A;  3KS0 A;  1BLV A;  3X34 A;  2I96 A;  4HIN A;  4X8Y A;  1I87 A;  1MJ4 A;  1IB7 A;  1LDC A;  1F03 A;  3X32 A;  1M2I A;  1U9M A;  1X3X A;  1AW3 A;  1B5A A;  1FCB A;  2IBJ A;  3LF5 A;  3X35 A;  1LCO A;  2KEO A;  1M2M A;  1AQA A;  1B5B A;  1NX7 A;  1I5U A;  2M33 A;  3MUS A;  1DO9 A;  1U9U A;  1I8C A;  1EUE A;  1LR6 A;  1LTD A;  1J03 A; 
#chains in the Genus database with same CATH topology
 1LQX A;  2I89 A;  1IET A;  1MNY A;  1M20 A;  3X33 A;  1LJ0 A;  1F04 A;  1AWP A;  3OZZ B;  1HKO A;  1EHB A;  1BFX A;  1M59 A;  1JEX A;  1J0Q A;  1IEU A;  1B5M A;  1CYO A;  2AXX A;  4B8N A;  1KBI A;  4HIL A;  1ICC A;  1CXY A;  1T0G A;  1ES1 A;  1SOX A;  3NER A;  1SH4 A;  1AXX A;  2OZ0 A;  3KS0 A;  1BLV A;  3X34 A;  2I96 A;  4HIN A;  4X8Y A;  1I87 A;  1MJ4 A;  1IB7 A;  1LDC A;  1F03 A;  3X32 A;  1M2I A;  1U9M A;  1X3X A;  1AW3 A;  1B5A A;  1FCB A;  2IBJ A;  3LF5 A;  3X35 A;  1LCO A;  2KEO A;  1M2M A;  1AQA A;  1B5B A;  1NX7 A;  1I5U A;  2M33 A;  3MUS A;  1DO9 A;  1U9U A;  1I8C A;  1EUE A;  1LR6 A;  1LTD A;  1J03 A; 
#chains in the Genus database with same CATH homology
 1LQX A;  2I89 A;  1IET A;  1MNY A;  1M20 A;  3X33 A;  1LJ0 A;  1F04 A;  1AWP A;  3OZZ B;  1HKO A;  1EHB A;  1BFX A;  1M59 A;  1JEX A;  1J0Q A;  1IEU A;  1B5M A;  1CYO A;  2AXX A;  4B8N A;  1KBI A;  4HIL A;  1ICC A;  1CXY A;  1T0G A;  1ES1 A;  1SOX A;  3NER A;  1SH4 A;  1AXX A;  2OZ0 A;  3KS0 A;  1BLV A;  3X34 A;  2I96 A;  4HIN A;  4X8Y A;  1I87 A;  1MJ4 A;  1IB7 A;  1LDC A;  1F03 A;  3X32 A;  1M2I A;  1U9M A;  1X3X A;  1AW3 A;  1B5A A;  1FCB A;  2IBJ A;  3LF5 A;  3X35 A;  1LCO A;  2KEO A;  1M2M A;  1AQA A;  1B5B A;  1NX7 A;  1I5U A;  2M33 A;  3MUS A;  1DO9 A;  1U9U A;  1I8C A;  1EUE A;  1LR6 A;  1LTD A;  1J03 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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