1M2M | Genus

Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	26
sequence length	82
structure length	82
Chain Sequence	AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEAVLRAQAGGDATANFEAVGHSTDARELSKTFIIGELHPDDR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 82 atoms

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82 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Electron transport
source organism	Bos taurus
publication title	Structures of Cytochrome b5 Mutated at the Charged Surface-Residues and Their Interactions with Cytochrome c pubmed rcsb
molecule keywords	cytochrome b5
total genus	26
structure length	82
sequence length	82
ec nomenclature
pdb deposition date	2002-06-24

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00173	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.120.10	Alpha Beta	Roll	Flavocytochrome B2; Chain A, domain 1	Cytochrome b5-like heme/steroid binding domain	1m2mA00

1M2IA 1IEUA 1BFXA 1F03A 1LDCA 1IETA 2IBJA 1M20A 1NX7A 1M2MA 1B5AA 1AW3A 1LTDA 1T0GA 2KEOA 1LCOA 1MJ4A 1EHBA 1EUEA 1J0QA 2OZ0A 1AXXA 1LR6A 3X35A 1U9MA 3X33A 3OZZB 1I87A 1F04A 1M59A 1ES1A 1AWPA 1U9UA 2I96A 1X3XA 1SOXA 3LF5A 2AXXA 1B5BA 1BLVA 1ICCA 2M33A 1MNYA 2I89A 4B8NA 3NERA 1I5UA 1J03A 1CXYA 1LJ0A 3MUSA 1KBIA 3X32A 1JEXA 1HKOA 1LQXA 4X8YA 1IB7A 1FCBA 1I8CA 3KS0A 3X34A 1DO9A 4HILA 1AQAA 1CYOA 4HINA 1B5MA 1SH4A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1M2I A;  1IEU A;  1BFX A;  1F03 A;  1LDC A;  1IET A;  2IBJ A;  1M20 A;  1NX7 A;  1M2M A;  1B5A A;  1AW3 A;  1LTD A;  1T0G A;  2KEO A;  1LCO A;  1MJ4 A;  1EHB A;  1EUE A;  1J0Q A;  2OZ0 A;  1AXX A;  1LR6 A;  3X35 A;  1U9M A;  3X33 A;  3OZZ B;  1I87 A;  1F04 A;  1M59 A;  1ES1 A;  1AWP A;  1U9U A;  2I96 A;  1X3X A;  1SOX A;  3LF5 A;  2AXX A;  1B5B A;  1BLV A;  1ICC A;  2M33 A;  1MNY A;  2I89 A;  4B8N A;  3NER A;  1I5U A;  1J03 A;  1CXY A;  1LJ0 A;  3MUS A;  1KBI A;  3X32 A;  1JEX A;  1HKO A;  1LQX A;  4X8Y A;  1IB7 A;  1FCB A;  1I8C A;  3KS0 A;  3X34 A;  1DO9 A;  4HIL A;  1AQA A;  1CYO A;  4HIN A;  1B5M A;  1SH4 A; 
#chains in the Genus database with same CATH topology
 1M2I A;  1IEU A;  1BFX A;  1F03 A;  1LDC A;  1IET A;  2IBJ A;  1M20 A;  1NX7 A;  1M2M A;  1B5A A;  1AW3 A;  1LTD A;  1T0G A;  2KEO A;  1LCO A;  1MJ4 A;  1EHB A;  1EUE A;  1J0Q A;  2OZ0 A;  1AXX A;  1LR6 A;  3X35 A;  1U9M A;  3X33 A;  3OZZ B;  1I87 A;  1F04 A;  1M59 A;  1ES1 A;  1AWP A;  1U9U A;  2I96 A;  1X3X A;  1SOX A;  3LF5 A;  2AXX A;  1B5B A;  1BLV A;  1ICC A;  2M33 A;  1MNY A;  2I89 A;  4B8N A;  3NER A;  1I5U A;  1J03 A;  1CXY A;  1LJ0 A;  3MUS A;  1KBI A;  3X32 A;  1JEX A;  1HKO A;  1LQX A;  4X8Y A;  1IB7 A;  1FCB A;  1I8C A;  3KS0 A;  3X34 A;  1DO9 A;  4HIL A;  1AQA A;  1CYO A;  4HIN A;  1B5M A;  1SH4 A; 
#chains in the Genus database with same CATH homology
 1M2I A;  1IEU A;  1BFX A;  1F03 A;  1LDC A;  1IET A;  2IBJ A;  1M20 A;  1NX7 A;  1M2M A;  1B5A A;  1AW3 A;  1LTD A;  1T0G A;  2KEO A;  1LCO A;  1MJ4 A;  1EHB A;  1EUE A;  1J0Q A;  2OZ0 A;  1AXX A;  1LR6 A;  3X35 A;  1U9M A;  3X33 A;  3OZZ B;  1I87 A;  1F04 A;  1M59 A;  1ES1 A;  1AWP A;  1U9U A;  2I96 A;  1X3X A;  1SOX A;  3LF5 A;  2AXX A;  1B5B A;  1BLV A;  1ICC A;  2M33 A;  1MNY A;  2I89 A;  4B8N A;  3NER A;  1I5U A;  1J03 A;  1CXY A;  1LJ0 A;  3MUS A;  1KBI A;  3X32 A;  1JEX A;  1HKO A;  1LQX A;  4X8Y A;  1IB7 A;  1FCB A;  1I8C A;  3KS0 A;  3X34 A;  1DO9 A;  4HIL A;  1AQA A;  1CYO A;  4HIN A;  1B5M A;  1SH4 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1M2MA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations