1MJ4A

Crystal structure analysis of the cytochrome b5 domain of human sulfite oxidase
Total Genus 24

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
80
structure length
79
Chain Sequence
STHIYTKEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHNQSHVRELLAQYKIGEL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (18-20)TIV1 (8-12)S2 (21-26)TIV2 (9-13)S1 (16-17)S3 (29-32)TIV4 (25-28)EMPTYS4 (78-81)AH3 (68-76)TI2 (33-36)3H2 (37-39)TII1 (40-43)AH1 (44-49)AH2 (55-60)TII2 (50-53)3H3 (63-65)TVIII1 (60-63)Updating...
connected with : NaN
molecule tags Oxidoreductase
source organism Homo sapiens
publication title The 1.2 A structure of the human sulfite oxidase cytochrome b(5) domain.
pubmed doi rcsb
molecule keywords sulfite oxidase
total genus 24
structure length 79
sequence length 80
ec nomenclature ec 1.8.3.1: Sulfite oxidase.
pdb deposition date 2002-08-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1mj4A00
4X8YA 1I8CA 1CYOA 1MNYA 1NX7A 1LCOA 2AXXA 4HINA 1IEUA 1LTDA 1LJ0A 2IBJA 3MUSA 1ICCA 1FCBA 1M2IA 2KEOA 1AWPA 1MJ4A 1BLVA 1B5MA 3X34A 1BFXA 3X33A 1JEXA 1LR6A 1SOXA 1M20A 1I5UA 1SH4A 3NERA 1B5AA 1M59A 1U9UA 3KS0A 1AXXA 1T0GA 1KBIA 1J03A 1J0QA 1IETA 1ES1A 3X35A 1M2MA 3X32A 3OZZB 4B8NA 1HKOA 1U9MA 1EHBA 1DO9A 1I87A 1IB7A 4HILA 1F04A 1AW3A 2I96A 1LQXA 2I89A 1AQAA 1CXYA 1EUEA 2OZ0A 1F03A 3LF5A 1B5BA 2M33A 1LDCA 1X3XA
chains in the Genus database with same CATH superfamily
4X8YA 1I8CA 1CYOA 1MNYA 1NX7A 1LCOA 2AXXA 4HINA 1IEUA 1LTDA 1LJ0A 2IBJA 3MUSA 1ICCA 1FCBA 1M2IA 2KEOA 1AWPA 1MJ4A 1BLVA 1B5MA 3X34A 1BFXA 3X33A 1JEXA 1LR6A 1SOXA 1M20A 1I5UA 1SH4A 3NERA 1B5AA 1M59A 1U9UA 3KS0A 1AXXA 1T0GA 1KBIA 1J03A 1J0QA 1IETA 1ES1A 3X35A 1M2MA 3X32A 3OZZB 4B8NA 1HKOA 1U9MA 1EHBA 1DO9A 1I87A 1IB7A 4HILA 1F04A 1AW3A 2I96A 1LQXA 2I89A 1AQAA 1CXYA 1EUEA 2OZ0A 1F03A 3LF5A 1B5BA 2M33A 1LDCA 1X3XA
chains in the Genus database with same CATH topology
4X8YA 1I8CA 1CYOA 1MNYA 1NX7A 1LCOA 2AXXA 4HINA 1IEUA 1LTDA 1LJ0A 2IBJA 3MUSA 1ICCA 1FCBA 1M2IA 2KEOA 1AWPA 1MJ4A 1BLVA 1B5MA 3X34A 1BFXA 3X33A 1JEXA 1LR6A 1SOXA 1M20A 1I5UA 1SH4A 3NERA 1B5AA 1M59A 1U9UA 3KS0A 1AXXA 1T0GA 1KBIA 1J03A 1J0QA 1IETA 1ES1A 3X35A 1M2MA 3X32A 3OZZB 4B8NA 1HKOA 1U9MA 1EHBA 1DO9A 1I87A 1IB7A 4HILA 1F04A 1AW3A 2I96A 1LQXA 2I89A 1AQAA 1CXYA 1EUEA 2OZ0A 1F03A 3LF5A 1B5BA 2M33A 1LDCA 1X3XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4X8Y A;  1I8C A;  1CYO A;  1MNY A;  1NX7 A;  1LCO A;  2AXX A;  4HIN A;  1IEU A;  1LTD A;  1LJ0 A;  2IBJ A;  3MUS A;  1ICC A;  1FCB A;  1M2I A;  2KEO A;  1AWP A;  1MJ4 A;  1BLV A;  1B5M A;  3X34 A;  1BFX A;  3X33 A;  1JEX A;  1LR6 A;  1SOX A;  1M20 A;  1I5U A;  1SH4 A;  3NER A;  1B5A A;  1M59 A;  1U9U A;  3KS0 A;  1AXX A;  1T0G A;  1KBI A;  1J03 A;  1J0Q A;  1IET A;  1ES1 A;  3X35 A;  1M2M A;  3X32 A;  3OZZ B;  4B8N A;  1HKO A;  1U9M A;  1EHB A;  1DO9 A;  1I87 A;  1IB7 A;  4HIL A;  1F04 A;  1AW3 A;  2I96 A;  1LQX A;  2I89 A;  1AQA A;  1CXY A;  1EUE A;  2OZ0 A;  1F03 A;  3LF5 A;  1B5B A;  2M33 A;  1LDC A;  1X3X A; 
#chains in the Genus database with same CATH topology
 4X8Y A;  1I8C A;  1CYO A;  1MNY A;  1NX7 A;  1LCO A;  2AXX A;  4HIN A;  1IEU A;  1LTD A;  1LJ0 A;  2IBJ A;  3MUS A;  1ICC A;  1FCB A;  1M2I A;  2KEO A;  1AWP A;  1MJ4 A;  1BLV A;  1B5M A;  3X34 A;  1BFX A;  3X33 A;  1JEX A;  1LR6 A;  1SOX A;  1M20 A;  1I5U A;  1SH4 A;  3NER A;  1B5A A;  1M59 A;  1U9U A;  3KS0 A;  1AXX A;  1T0G A;  1KBI A;  1J03 A;  1J0Q A;  1IET A;  1ES1 A;  3X35 A;  1M2M A;  3X32 A;  3OZZ B;  4B8N A;  1HKO A;  1U9M A;  1EHB A;  1DO9 A;  1I87 A;  1IB7 A;  4HIL A;  1F04 A;  1AW3 A;  2I96 A;  1LQX A;  2I89 A;  1AQA A;  1CXY A;  1EUE A;  2OZ0 A;  1F03 A;  3LF5 A;  1B5B A;  2M33 A;  1LDC A;  1X3X A; 
#chains in the Genus database with same CATH homology
 4X8Y A;  1I8C A;  1CYO A;  1MNY A;  1NX7 A;  1LCO A;  2AXX A;  4HIN A;  1IEU A;  1LTD A;  1LJ0 A;  2IBJ A;  3MUS A;  1ICC A;  1FCB A;  1M2I A;  2KEO A;  1AWP A;  1MJ4 A;  1BLV A;  1B5M A;  3X34 A;  1BFX A;  3X33 A;  1JEX A;  1LR6 A;  1SOX A;  1M20 A;  1I5U A;  1SH4 A;  3NER A;  1B5A A;  1M59 A;  1U9U A;  3KS0 A;  1AXX A;  1T0G A;  1KBI A;  1J03 A;  1J0Q A;  1IET A;  1ES1 A;  3X35 A;  1M2M A;  3X32 A;  3OZZ B;  4B8N A;  1HKO A;  1U9M A;  1EHB A;  1DO9 A;  1I87 A;  1IB7 A;  4HIL A;  1F04 A;  1AW3 A;  2I96 A;  1LQX A;  2I89 A;  1AQA A;  1CXY A;  1EUE A;  2OZ0 A;  1F03 A;  3LF5 A;  1B5B A;  2M33 A;  1LDC A;  1X3X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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