1MJ4A

Crystal structure analysis of the cytochrome b5 domain of human sulfite oxidase
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
80
structure length
79
Chain Sequence
STHIYTKEVSSHTSPETGIWVTLGSEVFDVTEFVDLHPGGPSKLMLAAGGPLEPFWALYAVHNQSHVRELLAQYKIGEL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title The 1.2 A structure of the human sulfite oxidase cytochrome b(5) domain.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Homo sapiens
molecule keywords sulfite oxidase
total genus 24
structure length 79
sequence length 80
ec nomenclature ec 1.8.3.1: Sulfite oxidase.
pdb deposition date 2002-08-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1mj4A00
1NX7A 1B5AA 1T0GA 3NERA 1LQXA 3OZZB 1HKOA 1IETA 1M59A 1CXYA 1AQAA 2I96A 3LF5A 1EUEA 1CYOA 1FCBA 2OZ0A 1U9UA 4HILA 4X8YA 1F03A 1LR6A 2IBJA 3X32A 1M2IA 1M20A 3MUSA 2AXXA 1JEXA 1I8CA 3X35A 1J0QA 1LTDA 1LDCA 2I89A 1I87A 1B5MA 1BLVA 1AXXA 1J03A 1IEUA 1ICCA 1DO9A 3X34A 1X3XA 4B8NA 1U9MA 1B5BA 1IB7A 1I5UA 1AW3A 1SOXA 2M33A 1M2MA 1EHBA 3KS0A 2KEOA 1LJ0A 1MJ4A 1F04A 1AWPA 1BFXA 1ES1A 1KBIA 1SH4A 1MNYA 4HINA 1LCOA 3X33A
chains in the Genus database with same CATH superfamily
1NX7A 1B5AA 1T0GA 3NERA 1LQXA 3OZZB 1HKOA 1IETA 1M59A 1CXYA 1AQAA 2I96A 3LF5A 1EUEA 1CYOA 1FCBA 2OZ0A 1U9UA 4HILA 4X8YA 1F03A 1LR6A 2IBJA 3X32A 1M2IA 1M20A 3MUSA 2AXXA 1JEXA 1I8CA 3X35A 1J0QA 1LTDA 1LDCA 2I89A 1I87A 1B5MA 1BLVA 1AXXA 1J03A 1IEUA 1ICCA 1DO9A 3X34A 1X3XA 4B8NA 1U9MA 1B5BA 1IB7A 1I5UA 1AW3A 1SOXA 2M33A 1M2MA 1EHBA 3KS0A 2KEOA 1LJ0A 1MJ4A 1F04A 1AWPA 1BFXA 1ES1A 1KBIA 1SH4A 1MNYA 4HINA 1LCOA 3X33A
chains in the Genus database with same CATH topology
1NX7A 1B5AA 1T0GA 3NERA 1LQXA 3OZZB 1HKOA 1IETA 1M59A 1CXYA 1AQAA 2I96A 3LF5A 1EUEA 1CYOA 1FCBA 2OZ0A 1U9UA 4HILA 4X8YA 1F03A 1LR6A 2IBJA 3X32A 1M2IA 1M20A 3MUSA 2AXXA 1JEXA 1I8CA 3X35A 1J0QA 1LTDA 1LDCA 2I89A 1I87A 1B5MA 1BLVA 1AXXA 1J03A 1IEUA 1ICCA 1DO9A 3X34A 1X3XA 4B8NA 1U9MA 1B5BA 1IB7A 1I5UA 1AW3A 1SOXA 2M33A 1M2MA 1EHBA 3KS0A 2KEOA 1LJ0A 1MJ4A 1F04A 1AWPA 1BFXA 1ES1A 1KBIA 1SH4A 1MNYA 4HINA 1LCOA 3X33A
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1NX7 A;  1B5A A;  1T0G A;  3NER A;  1LQX A;  3OZZ B;  1HKO A;  1IET A;  1M59 A;  1CXY A;  1AQA A;  2I96 A;  3LF5 A;  1EUE A;  1CYO A;  1FCB A;  2OZ0 A;  1U9U A;  4HIL A;  4X8Y A;  1F03 A;  1LR6 A;  2IBJ A;  3X32 A;  1M2I A;  1M20 A;  3MUS A;  2AXX A;  1JEX A;  1I8C A;  3X35 A;  1J0Q A;  1LTD A;  1LDC A;  2I89 A;  1I87 A;  1B5M A;  1BLV A;  1AXX A;  1J03 A;  1IEU A;  1ICC A;  1DO9 A;  3X34 A;  1X3X A;  4B8N A;  1U9M A;  1B5B A;  1IB7 A;  1I5U A;  1AW3 A;  1SOX A;  2M33 A;  1M2M A;  1EHB A;  3KS0 A;  2KEO A;  1LJ0 A;  1MJ4 A;  1F04 A;  1AWP A;  1BFX A;  1ES1 A;  1KBI A;  1SH4 A;  1MNY A;  4HIN A;  1LCO A;  3X33 A; 
#chains in the Genus database with same CATH topology
 1NX7 A;  1B5A A;  1T0G A;  3NER A;  1LQX A;  3OZZ B;  1HKO A;  1IET A;  1M59 A;  1CXY A;  1AQA A;  2I96 A;  3LF5 A;  1EUE A;  1CYO A;  1FCB A;  2OZ0 A;  1U9U A;  4HIL A;  4X8Y A;  1F03 A;  1LR6 A;  2IBJ A;  3X32 A;  1M2I A;  1M20 A;  3MUS A;  2AXX A;  1JEX A;  1I8C A;  3X35 A;  1J0Q A;  1LTD A;  1LDC A;  2I89 A;  1I87 A;  1B5M A;  1BLV A;  1AXX A;  1J03 A;  1IEU A;  1ICC A;  1DO9 A;  3X34 A;  1X3X A;  4B8N A;  1U9M A;  1B5B A;  1IB7 A;  1I5U A;  1AW3 A;  1SOX A;  2M33 A;  1M2M A;  1EHB A;  3KS0 A;  2KEO A;  1LJ0 A;  1MJ4 A;  1F04 A;  1AWP A;  1BFX A;  1ES1 A;  1KBI A;  1SH4 A;  1MNY A;  4HIN A;  1LCO A;  3X33 A; 
#chains in the Genus database with same CATH homology
 1NX7 A;  1B5A A;  1T0G A;  3NER A;  1LQX A;  3OZZ B;  1HKO A;  1IET A;  1M59 A;  1CXY A;  1AQA A;  2I96 A;  3LF5 A;  1EUE A;  1CYO A;  1FCB A;  2OZ0 A;  1U9U A;  4HIL A;  4X8Y A;  1F03 A;  1LR6 A;  2IBJ A;  3X32 A;  1M2I A;  1M20 A;  3MUS A;  2AXX A;  1JEX A;  1I8C A;  3X35 A;  1J0Q A;  1LTD A;  1LDC A;  2I89 A;  1I87 A;  1B5M A;  1BLV A;  1AXX A;  1J03 A;  1IEU A;  1ICC A;  1DO9 A;  3X34 A;  1X3X A;  4B8N A;  1U9M A;  1B5B A;  1IB7 A;  1I5U A;  1AW3 A;  1SOX A;  2M33 A;  1M2M A;  1EHB A;  3KS0 A;  2KEO A;  1LJ0 A;  1MJ4 A;  1F04 A;  1AWP A;  1BFX A;  1ES1 A;  1KBI A;  1SH4 A;  1MNY A;  4HIN A;  1LCO A;  3X33 A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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