The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
27
|
sequence length |
109
|
structure length |
109
|
Chain Sequence |
MGHHHHHHLEEFTAEQLSQYNGTDESKPIYVAIKGRVFDVTTGKSFYGSGGDYSMFAGKDASRALGKMSKNEEDVSPSLEGLTEKEINTLNDWETKFEAKYPVVGRVVS
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Hypothetical protein At2g24940.1 from Arabidopsis thaliana has a cytochrome b5 like fold
pubmed doi rcsb |
| molecule keywords |
cytochrome b5 domain-containing protein
|
| molecule tags |
Structural genomics, unknown function
|
| source organism |
Arabidopsis thaliana
|
| total genus |
27
|
| structure length |
109
|
| sequence length |
109
|
| ec nomenclature | |
| pdb deposition date | 2004-04-08 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00173 | Cyt-b5 | Cytochrome b5-like Heme/Steroid binding domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Flavocytochrome B2; Chain A, domain 1 | Cytochrome b5-like heme/steroid binding domain |
#chains in the Genus database with same CATH superfamily 1DO9 A; 2I96 A; 1M2I A; 2OZ0 A; 4HIL A; 1ES1 A; 2KEO A; 1B5B A; 1IET A; 1U9U A; 1CXY A; 1I87 A; 1J03 A; 1IEU A; 1LTD A; 3X32 A; 1J0Q A; 1F04 A; 1HKO A; 3LF5 A; 1JEX A; 1EHB A; 1EUE A; 1AW3 A; 1I5U A; 3KS0 A; 1B5A A; 3X34 A; 4HIN A; 1BLV A; 1NX7 A; 2AXX A; 1AXX A; 1B5M A; 4X8Y A; 4B8N A; 1FCB A; 2IBJ A; 1IB7 A; 1M59 A; 1MNY A; 1F03 A; 1LQX A; 2M33 A; 3MUS A; 3OZZ B; 3X35 A; 1AQA A; 1T0G A; 3NER A; 1LJ0 A; 1BFX A; 1CYO A; 1ICC A; 1LR6 A; 1LDC A; 3X33 A; 1LCO A; 1KBI A; 1X3X A; 1U9M A; 1SOX A; 2I89 A; 1SH4 A; 1I8C A; 1M2M A; 1M20 A; 1MJ4 A; 1AWP A; #chains in the Genus database with same CATH topology 1DO9 A; 2I96 A; 1M2I A; 2OZ0 A; 4HIL A; 1ES1 A; 2KEO A; 1B5B A; 1IET A; 1U9U A; 1CXY A; 1I87 A; 1J03 A; 1IEU A; 1LTD A; 3X32 A; 1J0Q A; 1F04 A; 1HKO A; 3LF5 A; 1JEX A; 1EHB A; 1EUE A; 1AW3 A; 1I5U A; 3KS0 A; 1B5A A; 3X34 A; 4HIN A; 1BLV A; 1NX7 A; 2AXX A; 1AXX A; 1B5M A; 4X8Y A; 4B8N A; 1FCB A; 2IBJ A; 1IB7 A; 1M59 A; 1MNY A; 1F03 A; 1LQX A; 2M33 A; 3MUS A; 3OZZ B; 3X35 A; 1AQA A; 1T0G A; 3NER A; 1LJ0 A; 1BFX A; 1CYO A; 1ICC A; 1LR6 A; 1LDC A; 3X33 A; 1LCO A; 1KBI A; 1X3X A; 1U9M A; 1SOX A; 2I89 A; 1SH4 A; 1I8C A; 1M2M A; 1M20 A; 1MJ4 A; 1AWP A; #chains in the Genus database with same CATH homology 1DO9 A; 2I96 A; 1M2I A; 2OZ0 A; 4HIL A; 1ES1 A; 2KEO A; 1B5B A; 1IET A; 1U9U A; 1CXY A; 1I87 A; 1J03 A; 1IEU A; 1LTD A; 3X32 A; 1J0Q A; 1F04 A; 1HKO A; 3LF5 A; 1JEX A; 1EHB A; 1EUE A; 1AW3 A; 1I5U A; 3KS0 A; 1B5A A; 3X34 A; 4HIN A; 1BLV A; 1NX7 A; 2AXX A; 1AXX A; 1B5M A; 4X8Y A; 4B8N A; 1FCB A; 2IBJ A; 1IB7 A; 1M59 A; 1MNY A; 1F03 A; 1LQX A; 2M33 A; 3MUS A; 3OZZ B; 3X35 A; 1AQA A; 1T0G A; 3NER A; 1LJ0 A; 1BFX A; 1CYO A; 1ICC A; 1LR6 A; 1LDC A; 3X33 A; 1LCO A; 1KBI A; 1X3X A; 1U9M A; 1SOX A; 2I89 A; 1SH4 A; 1I8C A; 1M2M A; 1M20 A; 1MJ4 A; 1AWP A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
