1X3X | Genus

Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
sequence length	82
structure length	82
Chain Sequence	CGDKKYTKEEVAKHNTQNDLWIIYDGEVHDMTSFYKEHPGGKVILNKAGQDATSVLKTLAPHVKAADVVMKKLKQTCIGKVK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 82 atoms

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82 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Unique structure of Ascaris suum b5-type cytochrome: an additional alpha-helix and positively charged residues on the surface domain interact with redox partners pubmed doi rcsb
molecule keywords	Cytochrome b5
molecule tags	Electron transport
source organism	Ascaris suum
total genus	29
structure length	82
sequence length	82
chains with identical sequence	B
ec nomenclature
pdb deposition date	2005-05-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00173	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.120.10	Alpha Beta	Roll	Flavocytochrome B2; Chain A, domain 1	Cytochrome b5-like heme/steroid binding domain	1x3xA00

1NX7A 2KEOA 1IETA 1SOXA 3KS0A 1CXYA 1ICCA 1AW3A 1AWPA 1M2MA 3NERA 3X35A 2M33A 1LCOA 1B5AA 3X32A 2I96A 1EHBA 1HKOA 1B5MA 4B8NA 1I8CA 1IB7A 2AXXA 4X8YA 4HILA 1SH4A 1M20A 1I5UA 1LR6A 1BFXA 1LJ0A 3OZZB 1M59A 1LQXA 1BLVA 1B5BA 1LTDA 1T0GA 1X3XA 2OZ0A 3LF5A 1FCBA 1MJ4A 3MUSA 1U9MA 1DO9A 1KBIA 1AQAA 1LDCA 1MNYA 1I87A 2I89A 2IBJA 1EUEA 1U9UA 1IEUA 1J0QA 1CYOA 4HINA 3X33A 3X34A 1M2IA 1AXXA 1ES1A 1F03A 1J03A 1F04A 1JEXA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1NX7 A;  2KEO A;  1IET A;  1SOX A;  3KS0 A;  1CXY A;  1ICC A;  1AW3 A;  1AWP A;  1M2M A;  3NER A;  3X35 A;  2M33 A;  1LCO A;  1B5A A;  3X32 A;  2I96 A;  1EHB A;  1HKO A;  1B5M A;  4B8N A;  1I8C A;  1IB7 A;  2AXX A;  4X8Y A;  4HIL A;  1SH4 A;  1M20 A;  1I5U A;  1LR6 A;  1BFX A;  1LJ0 A;  3OZZ B;  1M59 A;  1LQX A;  1BLV A;  1B5B A;  1LTD A;  1T0G A;  1X3X A;  2OZ0 A;  3LF5 A;  1FCB A;  1MJ4 A;  3MUS A;  1U9M A;  1DO9 A;  1KBI A;  1AQA A;  1LDC A;  1MNY A;  1I87 A;  2I89 A;  2IBJ A;  1EUE A;  1U9U A;  1IEU A;  1J0Q A;  1CYO A;  4HIN A;  3X33 A;  3X34 A;  1M2I A;  1AXX A;  1ES1 A;  1F03 A;  1J03 A;  1F04 A;  1JEX A; 
#chains in the Genus database with same CATH topology
 1NX7 A;  2KEO A;  1IET A;  1SOX A;  3KS0 A;  1CXY A;  1ICC A;  1AW3 A;  1AWP A;  1M2M A;  3NER A;  3X35 A;  2M33 A;  1LCO A;  1B5A A;  3X32 A;  2I96 A;  1EHB A;  1HKO A;  1B5M A;  4B8N A;  1I8C A;  1IB7 A;  2AXX A;  4X8Y A;  4HIL A;  1SH4 A;  1M20 A;  1I5U A;  1LR6 A;  1BFX A;  1LJ0 A;  3OZZ B;  1M59 A;  1LQX A;  1BLV A;  1B5B A;  1LTD A;  1T0G A;  1X3X A;  2OZ0 A;  3LF5 A;  1FCB A;  1MJ4 A;  3MUS A;  1U9M A;  1DO9 A;  1KBI A;  1AQA A;  1LDC A;  1MNY A;  1I87 A;  2I89 A;  2IBJ A;  1EUE A;  1U9U A;  1IEU A;  1J0Q A;  1CYO A;  4HIN A;  3X33 A;  3X34 A;  1M2I A;  1AXX A;  1ES1 A;  1F03 A;  1J03 A;  1F04 A;  1JEX A; 
#chains in the Genus database with same CATH homology
 1NX7 A;  2KEO A;  1IET A;  1SOX A;  3KS0 A;  1CXY A;  1ICC A;  1AW3 A;  1AWP A;  1M2M A;  3NER A;  3X35 A;  2M33 A;  1LCO A;  1B5A A;  3X32 A;  2I96 A;  1EHB A;  1HKO A;  1B5M A;  4B8N A;  1I8C A;  1IB7 A;  2AXX A;  4X8Y A;  4HIL A;  1SH4 A;  1M20 A;  1I5U A;  1LR6 A;  1BFX A;  1LJ0 A;  3OZZ B;  1M59 A;  1LQX A;  1BLV A;  1B5B A;  1LTD A;  1T0G A;  1X3X A;  2OZ0 A;  3LF5 A;  1FCB A;  1MJ4 A;  3MUS A;  1U9M A;  1DO9 A;  1KBI A;  1AQA A;  1LDC A;  1MNY A;  1I87 A;  2I89 A;  2IBJ A;  1EUE A;  1U9U A;  1IEU A;  1J0Q A;  1CYO A;  4HIN A;  3X33 A;  3X34 A;  1M2I A;  1AXX A;  1ES1 A;  1F03 A;  1J03 A;  1F04 A;  1JEX A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1X3XA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations