2F1ZA

Crystal structure of hausp
Total Genus 93
50100150200250300350400450020406080
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
488
structure length
470
Chain Sequence
SWRSEATFQFTVERFSRLSESVLSPPCFVRNLPWKIMVMPRKSVGFFLQCNAESDSTSWSCHAQAVLKIINYRDDEKSFSRRISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGVAWDSKKHTGYVGLKNQTCYMNSLLQTLFFTNQLRKAVYMMPTEGDDSSKSVPLALQRVFYELQHSDKPVGTKKLTKSFGWETLDSFMQHDVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSIKGKKNIFESFVDYVAVEQLDGDNKYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKRIE
50100150200250300350400450400300200100
020406080Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV4 (91-94)S2 (85-86)TIV3 (78-81)S1 (68-75)TIV2 (77-80)TIV5 (103-114)S5 (114-121)S20 (409-411)S6 (131-141)S11 (188-201)TI2 (142-145)3H1 (146-148)3H2 (160-161)S9 (164-172)TIV26 (375-378)S23 (447-457)3H3 (173-175)AH2 (236-244)TI3 (175-178)TI4 (178-181)TI5 (179-182)TIV12 (206-209)S10 (184-185)TIV10 (184-187)S24 (464-469)TIV14 (208-211)AH1 (224-234)S12 (326-332)TIV16 (247-250)TIV17 (252-255)AH3 (256-269)AH6 (320-324)TII1 (316-319)AH4 (278-283)TIV24 (334-337)S14 (350-352)TIV21 (290-293)TIV18 (285-288)TIV20 (289-292)TIV19 (288-291)TI7 (291-294)AH5 (296-309)TIV23 (311-314)TIV22 (309-312)AH7 (360-368)TIV25 (374-377)3H5 (434-436)S13 (341-347)3H4 (382-384)TII2 (354-357)TVIII3 (437-440)S15 (371-373)TIV29 (441-444)S18 (389-397)S16 (379-380)TVIII2 (428-431)TIV27 (384-387)S19 (401-406)TVIII1 (399-402)TIV28 (412-415)S22 (430-432)TIV30 (442-445)TIV7 (120-123)S4 (95-101)S7 (150-153)S8 (156-158)TIV11 (200-203)TI6 (251-254)TI8 (314-317)S21 (418-420)TI1 (122-125)TIV8 (127-130)TIV1 (75-78)S3 (90-92)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Homo sapiens
publication title Structural Basis of Competitive Recognition of p53 and MDM2 by HAUSP/USP7: Implications for the Regulation of the p53-MDM2 Pathway.
pubmed doi rcsb
molecule keywords Ubiquitin carboxyl-terminal hydrolase 7
total genus 93
structure length 470
sequence length 488
chains with identical sequence B
ec nomenclature ec 3.4.19.12: Ubiquitinyl hydrolase 1.
pdb deposition date 2005-11-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00443 UCH Ubiquitin carboxyl-terminal hydrolase
A PF00917 MATH MATH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.210.10 Mainly Beta Single Sheet ubp-family deubiquitinating enzyme fold ubp-family deubiquitinating enzyme superfamily 2f1zA03
2.60.210.10 Mainly Beta Sandwich Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 2f1zA01
1K2FA 4KG9A 1YY6A 3HQLA 2CR2A 1L0AA 3HQIA 1D0JA 3IVBA 3IVVA 3HSVA 2FOOA 2FOPA 1LB4A 4I7DA 3HQMA 1LB5A 1RF3A 2F1YA 1NB8A 1LB6A 2F1ZA 4M5WA 1QSCA 4GWNA 3HQHA 4GHUA 4GWMA 4I7BA 1CZYA 2AN6A 4YSIA 4K8UA 1D01A 2F1WA 3MQRA 4JJQA 3IVQA 3MQSC 4O1VA 4C9ZA 3ZJBA 1CA9A 4CA1A 1ZMSA 4GJHA 1D0AA 5H9MA 1YZEA 4X3GA 1FLKA 5E1TA 4M5XA 1F3VB 1KZZA 2FOJA 4I7CA 1FLLA 2XXNA 4Z8MA 2GKWA 3HU6A 1CZZA 1CA4A 1D00A 1NBFA 4M4EA 2F1XA 2A25A
chains in the Genus database with same CATH superfamily
1K2FA 4KG9A 1YY6A 3HQLA 2CR2A 1L0AA 3HQIA 1D0JA 3IVBA 3IVVA 3HSVA 2FOOA 2FOPA 1LB4A 4I7DA 3HQMA 1LB5A 1RF3A 2F1YA 1NB8A 1LB6A 2F1ZA 4M5WA 1QSCA 4GWNA 3HQHA 4GHUA 4GWMA 4I7BA 1CZYA 2AN6A 4YSIA 4K8UA 1D01A 2F1WA 3MQRA 4JJQA 3IVQA 3MQSC 4O1VA 4C9ZA 3ZJBA 1CA9A 4CA1A 1ZMSA 4GJHA 1D0AA 5H9MA 3FRPB 1YZEA 4X3GA 1FLKA 5E1TA 4M5XA 1F3VB 1KZZA 2FOJA 4I7CA 1FLLA 2XXNA 4Z8MA 3HRZC 2GKWA 3HS0C 3HU6A 1CZZA 1CA4A 1D00A 1NBFA 4M4EA 2F1XA 2A25A
chains in the Genus database with same CATH topology
1K2FA 4KG9A 1YY6A 3HQLA 2CR2A 1L0AA 3HQIA 1D0JA 3IVBA 3IVVA 3HSVA 2FOOA 2FOPA 1LB4A 4I7DA 3HQMA 1LB5A 1RF3A 2F1YA 1NB8A 1LB6A 2F1ZA 4M5WA 1QSCA 4GWNA 3HQHA 4GHUA 4GWMA 4I7BA 1CZYA 2AN6A 4YSIA 4K8UA 1D01A 2F1WA 3MQRA 4JJQA 3IVQA 3MQSC 4O1VA 4C9ZA 3ZJBA 1CA9A 4CA1A 1ZMSA 4GJHA 1D0AA 5H9MA 1YZEA 4X3GA 1FLKA 5E1TA 4M5XA 1F3VB 1KZZA 2FOJA 4I7CA 1FLLA 2XXNA 4Z8MA 2GKWA 3HU6A 1CZZA 1CA4A 1D00A 1NBFA 4M4EA 2F1XA 2A25A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K2F A;  4KG9 A;  1YY6 A;  3HQL A;  2CR2 A;  1L0A A;  3HQI A;  1D0J A;  3IVB A;  3IVV A;  3HSV A;  2FOO A;  2FOP A;  1LB4 A;  4I7D A;  3HQM A;  1LB5 A;  1RF3 A;  2F1Y A;  1NB8 A;  1LB6 A;  2F1Z A;  4M5W A;  1QSC A;  4GWN A;  3HQH A;  4GHU A;  4GWM A;  4I7B A;  1CZY A;  2AN6 A;  4YSI A;  4K8U A;  1D01 A;  2F1W A;  3MQR A;  4JJQ A;  3IVQ A;  3MQS C;  4O1V A;  4C9Z A;  3ZJB A;  1CA9 A;  4CA1 A;  1ZMS A;  4GJH A;  1D0A A;  5H9M A;  1YZE A;  4X3G A;  1FLK A;  5E1T A;  4M5X A;  1F3V B;  1KZZ A;  2FOJ A;  4I7C A;  1FLL A;  2XXN A;  4Z8M A;  2GKW A;  3HU6 A;  1CZZ A;  1CA4 A;  1D00 A;  1NBF A;  4M4E A;  2F1X A;  2A25 A; 
#chains in the Genus database with same CATH topology
 1K2F A;  4KG9 A;  1YY6 A;  3HQL A;  2CR2 A;  1L0A A;  3HQI A;  1D0J A;  3IVB A;  3IVV A;  3HSV A;  2FOO A;  2FOP A;  1LB4 A;  4I7D A;  3HQM A;  1LB5 A;  1RF3 A;  2F1Y A;  1NB8 A;  1LB6 A;  2F1Z A;  4M5W A;  1QSC A;  4GWN A;  3HQH A;  4GHU A;  4GWM A;  4I7B A;  1CZY A;  2AN6 A;  4YSI A;  4K8U A;  1D01 A;  2F1W A;  3MQR A;  4JJQ A;  3IVQ A;  3MQS C;  4O1V A;  4C9Z A;  3ZJB A;  1CA9 A;  4CA1 A;  1ZMS A;  4GJH A;  1D0A A;  5H9M A;  3FRP B;  1YZE A;  4X3G A;  1FLK A;  5E1T A;  4M5X A;  1F3V B;  1KZZ A;  2FOJ A;  4I7C A;  1FLL A;  2XXN A;  4Z8M A;  3HRZ C;  2GKW A;  3HS0 C;  3HU6 A;  1CZZ A;  1CA4 A;  1D00 A;  1NBF A;  4M4E A;  2F1X A;  2A25 A; 
#chains in the Genus database with same CATH homology
 1K2F A;  4KG9 A;  1YY6 A;  3HQL A;  2CR2 A;  1L0A A;  3HQI A;  1D0J A;  3IVB A;  3IVV A;  3HSV A;  2FOO A;  2FOP A;  1LB4 A;  4I7D A;  3HQM A;  1LB5 A;  1RF3 A;  2F1Y A;  1NB8 A;  1LB6 A;  2F1Z A;  4M5W A;  1QSC A;  4GWN A;  3HQH A;  4GHU A;  4GWM A;  4I7B A;  1CZY A;  2AN6 A;  4YSI A;  4K8U A;  1D01 A;  2F1W A;  3MQR A;  4JJQ A;  3IVQ A;  3MQS C;  4O1V A;  4C9Z A;  3ZJB A;  1CA9 A;  4CA1 A;  1ZMS A;  4GJH A;  1D0A A;  5H9M A;  1YZE A;  4X3G A;  1FLK A;  5E1T A;  4M5X A;  1F3V B;  1KZZ A;  2FOJ A;  4I7C A;  1FLL A;  2XXN A;  4Z8M A;  2GKW A;  3HU6 A;  1CZZ A;  1CA4 A;  1D00 A;  1NBF A;  4M4E A;  2F1X A;  2A25 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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