2I89 | Genus

Total Genus 27

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	27
sequence length	90
structure length	90
Chain Sequence	QGSDPAVTYYRLEEVAKHNTSESTWMVLHGRVYDLTRFLSEHPGGEEVLREQAGADATESFEDVGHSPDAREMSKQYYIGDVHPNDLKPK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 90 atoms

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90 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	A histidine/tryptophan pi-stacking interaction stabilizes the heme-independent folding core of microsomal apocytochrome b5 relative to that of mitochondrial apocytochrome b5. pubmed doi rcsb
molecule keywords	Cytochrome b5 type B
molecule tags	Electron transport
source organism	Rattus norvegicus
total genus	27
structure length	90
sequence length	90
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2006-09-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00173	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.120.10	Alpha Beta	Roll	Flavocytochrome B2; Chain A, domain 1	Cytochrome b5-like heme/steroid binding domain	2i89A00

1I87A 2AXXA 1IB7A 1FCBA 1ES1A 1LR6A 3NERA 1J03A 1ICCA 1M2IA 2OZ0A 3OZZB 1AXXA 1MJ4A 1LTDA 1LJ0A 1LQXA 4HILA 2M33A 1JEXA 1AWPA 1AW3A 3LF5A 1J0QA 1IEUA 1SOXA 1DO9A 1F04A 1EHBA 1B5AA 1AQAA 1U9MA 1IETA 3X33A 4HINA 4B8NA 1M2MA 1BFXA 3X35A 1I5UA 1B5BA 1CYOA 1NX7A 1SH4A 1EUEA 1KBIA 1MNYA 2I89A 2IBJA 3KS0A 3X32A 1HKOA 1M59A 3X34A 1T0GA 1B5MA 1I8CA 1LDCA 1U9UA 1X3XA 2KEOA 3MUSA 1BLVA 1F03A 1LCOA 4X8YA 1CXYA 2I96A 1M20A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1I87 A;  2AXX A;  1IB7 A;  1FCB A;  1ES1 A;  1LR6 A;  3NER A;  1J03 A;  1ICC A;  1M2I A;  2OZ0 A;  3OZZ B;  1AXX A;  1MJ4 A;  1LTD A;  1LJ0 A;  1LQX A;  4HIL A;  2M33 A;  1JEX A;  1AWP A;  1AW3 A;  3LF5 A;  1J0Q A;  1IEU A;  1SOX A;  1DO9 A;  1F04 A;  1EHB A;  1B5A A;  1AQA A;  1U9M A;  1IET A;  3X33 A;  4HIN A;  4B8N A;  1M2M A;  1BFX A;  3X35 A;  1I5U A;  1B5B A;  1CYO A;  1NX7 A;  1SH4 A;  1EUE A;  1KBI A;  1MNY A;  2I89 A;  2IBJ A;  3KS0 A;  3X32 A;  1HKO A;  1M59 A;  3X34 A;  1T0G A;  1B5M A;  1I8C A;  1LDC A;  1U9U A;  1X3X A;  2KEO A;  3MUS A;  1BLV A;  1F03 A;  1LCO A;  4X8Y A;  1CXY A;  2I96 A;  1M20 A; 
#chains in the Genus database with same CATH topology
 1I87 A;  2AXX A;  1IB7 A;  1FCB A;  1ES1 A;  1LR6 A;  3NER A;  1J03 A;  1ICC A;  1M2I A;  2OZ0 A;  3OZZ B;  1AXX A;  1MJ4 A;  1LTD A;  1LJ0 A;  1LQX A;  4HIL A;  2M33 A;  1JEX A;  1AWP A;  1AW3 A;  3LF5 A;  1J0Q A;  1IEU A;  1SOX A;  1DO9 A;  1F04 A;  1EHB A;  1B5A A;  1AQA A;  1U9M A;  1IET A;  3X33 A;  4HIN A;  4B8N A;  1M2M A;  1BFX A;  3X35 A;  1I5U A;  1B5B A;  1CYO A;  1NX7 A;  1SH4 A;  1EUE A;  1KBI A;  1MNY A;  2I89 A;  2IBJ A;  3KS0 A;  3X32 A;  1HKO A;  1M59 A;  3X34 A;  1T0G A;  1B5M A;  1I8C A;  1LDC A;  1U9U A;  1X3X A;  2KEO A;  3MUS A;  1BLV A;  1F03 A;  1LCO A;  4X8Y A;  1CXY A;  2I96 A;  1M20 A; 
#chains in the Genus database with same CATH homology
 1I87 A;  2AXX A;  1IB7 A;  1FCB A;  1ES1 A;  1LR6 A;  3NER A;  1J03 A;  1ICC A;  1M2I A;  2OZ0 A;  3OZZ B;  1AXX A;  1MJ4 A;  1LTD A;  1LJ0 A;  1LQX A;  4HIL A;  2M33 A;  1JEX A;  1AWP A;  1AW3 A;  3LF5 A;  1J0Q A;  1IEU A;  1SOX A;  1DO9 A;  1F04 A;  1EHB A;  1B5A A;  1AQA A;  1U9M A;  1IET A;  3X33 A;  4HIN A;  4B8N A;  1M2M A;  1BFX A;  3X35 A;  1I5U A;  1B5B A;  1CYO A;  1NX7 A;  1SH4 A;  1EUE A;  1KBI A;  1MNY A;  2I89 A;  2IBJ A;  3KS0 A;  3X32 A;  1HKO A;  1M59 A;  3X34 A;  1T0G A;  1B5M A;  1I8C A;  1LDC A;  1U9U A;  1X3X A;  2KEO A;  3MUS A;  1BLV A;  1F03 A;  1LCO A;  4X8Y A;  1CXY A;  2I96 A;  1M20 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2I89A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations