2PUMA

Crystal structure of bovine lactoperoxidase complex with catechol and iodide at 2.7 a resolution
Total Genus 189
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
189
sequence length
595
structure length
594
Chain Sequence
SWEVGCGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSTVDKLDLSPWASREN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
publication title Crystal structure of bovine lactoperoxidase complex with catechol and iodide at 2.7 A resolution
rcsb
molecule keywords Lactoperoxidase
molecule tags Oxidoreductase
total genus 189
structure length 594
sequence length 595
ec nomenclature ec 1.11.1.7: Peroxidase.
pdb deposition date 2007-05-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03098 An_peroxidase Animal haem peroxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.640.10 Mainly Alpha Orthogonal Bundle Myeloperoxidase, subunit C Haem peroxidase domain superfamily, animal type 2pumA00
1U67A 3N8FA 4Y55A 3R5QA 3TZIA 3QF1A 3OLTA 3R5OA 1EQGA 2QPKA 5IKQA 3QMOA 3N8YB 5F1AA 5JVYA 5GH0A 4RRWA 1HT5A 3BXIA 3FNLA 3GCKA 3HS7A 4M10A 1D7WC 2AYLA 4QJQA 3R4XA 5FIWC 1D2VC 4NT3A 1PRHA 5HPWA 3ERIA 1DNWC 4M11A 2PT3A 1CQEA 1FE2A 2OJVA 4GN6A 4IG5A 4Z0LA 3N8WB 4RRYA 3MQEA 5COXA 3RR3A 1EQHA 3Q9KA 4DL1C 3KRKA 3ZS0C 5IKTA 5JW1A 4OTYA 4LJJA 1DIYA 1PTHA 3ERHA 3NIUA 3QH0A 3GC1A 2PUMA 3MDLA 4PH9A 4KVKA 4RS0A 1D5LC 3OGWA 4COXA 4KSZA 1CXPC 3KK6A 1CX2A 3GCLA 3Q7DA 1MHLC 2GJMA 4KVJA 5FDQA 3N8YA 4GM7A 3LN1A 3OLUA 4HHSA 2OYUP 5GLSA 1PGEA 1EBVA 3I6NA 5IKRA 3F9PC 3HS6A 1IGZA 3N8XA 1Q4GA 4OEKA 3PGHA 4FM5A 3GCJA 5IKVA 2EHAA 3NT1A 2QQTA 1IGXA 3N8ZA 3NTBA 4RUTA 5KIRA 3TGYA 2IPSA 3SXVA 4KVLA 4E1GA 3R55A 4N7AA 1DDXA 1HT8A 4O1ZA 1PXXA 3ZS1C 3N8WA 4PNXA 3S4FA 2NQXA 3QL6A 4C1MC 2E9EA 3HS5A 3NYHA 2OYEP 4MSFA 3UBAA 5FF1A 2EFBA 3NAKA 6COXA 2O86A 3LN0A 3PY4A 3V6QA 4RRZA 4HHRA 2IKCA 3RKEA 5JVZA 2QRBA 4QYQA 4NJBA 4OTJA 2Z5ZA 3N8VA 3KRQA 5B72A 3NTGA 1DNUC 4RRXA 1CVUA 3FAQA 5F19A 1MYPC 2R5LA
chains in the Genus database with same CATH superfamily
1U67A 3N8FA 4Y55A 3R5QA 3TZIA 3QF1A 3OLTA 3R5OA 1EQGA 2QPKA 5IKQA 3QMOA 3N8YB 5F1AA 5JVYA 5GH0A 4RRWA 1HT5A 3BXIA 3FNLA 3GCKA 3HS7A 4M10A 1D7WC 2AYLA 4QJQA 3R4XA 5FIWC 1D2VC 4NT3A 1PRHA 5HPWA 3ERIA 1DNWC 4M11A 2PT3A 1CQEA 1FE2A 2OJVA 4GN6A 4IG5A 4Z0LA 3N8WB 4RRYA 3MQEA 5COXA 3RR3A 1EQHA 3Q9KA 4DL1C 3KRKA 3ZS0C 5IKTA 5JW1A 4OTYA 4LJJA 1DIYA 1PTHA 3ERHA 3NIUA 3QH0A 3GC1A 2PUMA 3MDLA 4PH9A 4KVKA 4RS0A 1D5LC 3OGWA 4COXA 4KSZA 1CXPC 3KK6A 1CX2A 3GCLA 3Q7DA 1MHLC 2GJMA 4KVJA 5FDQA 3N8YA 4GM7A 3LN1A 3OLUA 4HHSA 2OYUP 5GLSA 1PGEA 1EBVA 3I6NA 5IKRA 3F9PC 3HS6A 1IGZA 3N8XA 1Q4GA 4OEKA 3PGHA 4FM5A 3GCJA 5IKVA 2EHAA 3NT1A 2QQTA 1IGXA 3N8ZA 3NTBA 4RUTA 5KIRA 3TGYA 2IPSA 3SXVA 4KVLA 4E1GA 3R55A 4N7AA 1DDXA 1HT8A 4O1ZA 1PXXA 3ZS1C 3N8WA 4PNXA 3S4FA 2NQXA 3QL6A 4C1MC 2E9EA 3HS5A 3NYHA 2OYEP 4MSFA 3UBAA 5FF1A 2EFBA 3NAKA 6COXA 2O86A 3LN0A 3PY4A 3V6QA 4RRZA 4HHRA 2IKCA 3RKEA 5JVZA 2QRBA 4QYQA 4NJBA 4OTJA 2Z5ZA 3N8VA 3KRQA 5B72A 3NTGA 1DNUC 4RRXA 1CVUA 3FAQA 5F19A 1MYPC 2R5LA
chains in the Genus database with same CATH topology
1U67A 3N8FA 4Y55A 3R5QA 3TZIA 3QF1A 3OLTA 3R5OA 1EQGA 2QPKA 5IKQA 3QMOA 3N8YB 5F1AA 5JVYA 5GH0A 4RRWA 1HT5A 3BXIA 3FNLA 3GCKA 3HS7A 4M10A 1D7WC 2AYLA 4QJQA 3R4XA 5FIWC 1D2VC 4NT3A 1PRHA 5HPWA 3ERIA 1DNWC 4M11A 2PT3A 1CQEA 1FE2A 2OJVA 4GN6A 4IG5A 4Z0LA 3N8WB 4RRYA 3MQEA 5COXA 3RR3A 1EQHA 3Q9KA 4DL1C 3KRKA 3ZS0C 5IKTA 5JW1A 4OTYA 4LJJA 1DIYA 1PTHA 3ERHA 3NIUA 3QH0A 3GC1A 2PUMA 3MDLA 4PH9A 4KVKA 4RS0A 1D5LC 3OGWA 4COXA 4KSZA 1CXPC 3KK6A 1CX2A 3GCLA 3Q7DA 1MHLC 2GJMA 4KVJA 5FDQA 3N8YA 4GM7A 3LN1A 3OLUA 4HHSA 2OYUP 5GLSA 1PGEA 1EBVA 3I6NA 5IKRA 3F9PC 3HS6A 1IGZA 3N8XA 1Q4GA 4OEKA 3PGHA 4FM5A 3GCJA 5IKVA 2EHAA 3NT1A 2QQTA 1IGXA 3N8ZA 3NTBA 4RUTA 5KIRA 3TGYA 2IPSA 3SXVA 4KVLA 4E1GA 3R55A 4N7AA 1DDXA 1HT8A 4O1ZA 1PXXA 3ZS1C 3N8WA 4PNXA 3S4FA 2NQXA 3QL6A 4C1MC 2E9EA 3HS5A 3NYHA 2OYEP 4MSFA 3UBAA 5FF1A 2EFBA 3NAKA 6COXA 2O86A 3LN0A 3PY4A 3V6QA 4RRZA 4HHRA 2IKCA 3RKEA 5JVZA 2QRBA 4QYQA 4NJBA 4OTJA 2Z5ZA 3N8VA 3KRQA 5B72A 3NTGA 1DNUC 4RRXA 1CVUA 3FAQA 5F19A 1MYPC 2R5LA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 1U67 A;  3N8F A;  4Y55 A;  3R5Q A;  3TZI A;  3QF1 A;  3OLT A;  3R5O A;  1EQG A;  2QPK A;  5IKQ A;  3QMO A;  3N8Y B;  5F1A A;  5JVY A;  5GH0 A;  4RRW A;  1HT5 A;  3BXI A;  3FNL A;  3GCK A;  3HS7 A;  4M10 A;  1D7W C;  2AYL A;  4QJQ A;  3R4X A;  5FIW C;  1D2V C;  4NT3 A;  1PRH A;  5HPW A;  3ERI A;  1DNW C;  4M11 A;  2PT3 A;  1CQE A;  1FE2 A;  2OJV A;  4GN6 A;  4IG5 A;  4Z0L A;  3N8W B;  4RRY A;  3MQE A;  5COX A;  3RR3 A;  1EQH A;  3Q9K A;  4DL1 C;  3KRK A;  3ZS0 C;  5IKT A;  5JW1 A;  4OTY A;  4LJJ A;  1DIY A;  1PTH A;  3ERH A;  3NIU A;  3QH0 A;  3GC1 A;  2PUM A;  3MDL A;  4PH9 A;  4KVK A;  4RS0 A;  1D5L C;  3OGW A;  4COX A;  4KSZ A;  1CXP C;  3KK6 A;  1CX2 A;  3GCL A;  3Q7D A;  1MHL C;  2GJM A;  4KVJ A;  5FDQ A;  3N8Y A;  4GM7 A;  3LN1 A;  3OLU A;  4HHS A;  2OYU P;  5GLS A;  1PGE A;  1EBV A;  3I6N A;  5IKR A;  3F9P C;  3HS6 A;  1IGZ A;  3N8X A;  1Q4G A;  4OEK A;  3PGH A;  4FM5 A;  3GCJ A;  5IKV A;  2EHA A;  3NT1 A;  2QQT A;  1IGX A;  3N8Z A;  3NTB A;  4RUT A;  5KIR A;  3TGY A;  2IPS A;  3SXV A;  4KVL A;  4E1G A;  3R55 A;  4N7A A;  1DDX A;  1HT8 A;  4O1Z A;  1PXX A;  3ZS1 C;  3N8W A;  4PNX A;  3S4F A;  2NQX A;  3QL6 A;  4C1M C;  2E9E A;  3HS5 A;  3NYH A;  2OYE P;  4MSF A;  3UBA A;  5FF1 A;  2EFB A;  3NAK A;  6COX A;  2O86 A;  3LN0 A;  3PY4 A;  3V6Q A;  4RRZ A;  4HHR A;  2IKC A;  3RKE A;  5JVZ A;  2QRB A;  4QYQ A;  4NJB A;  4OTJ A;  2Z5Z A;  3N8V A;  3KRQ A;  5B72 A;  3NTG A;  1DNU C;  4RRX A;  1CVU A;  3FAQ A;  5F19 A;  1MYP C;  2R5L A; 
#chains in the Genus database with same CATH topology
 1U67 A;  3N8F A;  4Y55 A;  3R5Q A;  3TZI A;  3QF1 A;  3OLT A;  3R5O A;  1EQG A;  2QPK A;  5IKQ A;  3QMO A;  3N8Y B;  5F1A A;  5JVY A;  5GH0 A;  4RRW A;  1HT5 A;  3BXI A;  3FNL A;  3GCK A;  3HS7 A;  4M10 A;  1D7W C;  2AYL A;  4QJQ A;  3R4X A;  5FIW C;  1D2V C;  4NT3 A;  1PRH A;  5HPW A;  3ERI A;  1DNW C;  4M11 A;  2PT3 A;  1CQE A;  1FE2 A;  2OJV A;  4GN6 A;  4IG5 A;  4Z0L A;  3N8W B;  4RRY A;  3MQE A;  5COX A;  3RR3 A;  1EQH A;  3Q9K A;  4DL1 C;  3KRK A;  3ZS0 C;  5IKT A;  5JW1 A;  4OTY A;  4LJJ A;  1DIY A;  1PTH A;  3ERH A;  3NIU A;  3QH0 A;  3GC1 A;  2PUM A;  3MDL A;  4PH9 A;  4KVK A;  4RS0 A;  1D5L C;  3OGW A;  4COX A;  4KSZ A;  1CXP C;  3KK6 A;  1CX2 A;  3GCL A;  3Q7D A;  1MHL C;  2GJM A;  4KVJ A;  5FDQ A;  3N8Y A;  4GM7 A;  3LN1 A;  3OLU A;  4HHS A;  2OYU P;  5GLS A;  1PGE A;  1EBV A;  3I6N A;  5IKR A;  3F9P C;  3HS6 A;  1IGZ A;  3N8X A;  1Q4G A;  4OEK A;  3PGH A;  4FM5 A;  3GCJ A;  5IKV A;  2EHA A;  3NT1 A;  2QQT A;  1IGX A;  3N8Z A;  3NTB A;  4RUT A;  5KIR A;  3TGY A;  2IPS A;  3SXV A;  4KVL A;  4E1G A;  3R55 A;  4N7A A;  1DDX A;  1HT8 A;  4O1Z A;  1PXX A;  3ZS1 C;  3N8W A;  4PNX A;  3S4F A;  2NQX A;  3QL6 A;  4C1M C;  2E9E A;  3HS5 A;  3NYH A;  2OYE P;  4MSF A;  3UBA A;  5FF1 A;  2EFB A;  3NAK A;  6COX A;  2O86 A;  3LN0 A;  3PY4 A;  3V6Q A;  4RRZ A;  4HHR A;  2IKC A;  3RKE A;  5JVZ A;  2QRB A;  4QYQ A;  4NJB A;  4OTJ A;  2Z5Z A;  3N8V A;  3KRQ A;  5B72 A;  3NTG A;  1DNU C;  4RRX A;  1CVU A;  3FAQ A;  5F19 A;  1MYP C;  2R5L A; 
#chains in the Genus database with same CATH homology
 1U67 A;  3N8F A;  4Y55 A;  3R5Q A;  3TZI A;  3QF1 A;  3OLT A;  3R5O A;  1EQG A;  2QPK A;  5IKQ A;  3QMO A;  3N8Y B;  5F1A A;  5JVY A;  5GH0 A;  4RRW A;  1HT5 A;  3BXI A;  3FNL A;  3GCK A;  3HS7 A;  4M10 A;  1D7W C;  2AYL A;  4QJQ A;  3R4X A;  5FIW C;  1D2V C;  4NT3 A;  1PRH A;  5HPW A;  3ERI A;  1DNW C;  4M11 A;  2PT3 A;  1CQE A;  1FE2 A;  2OJV A;  4GN6 A;  4IG5 A;  4Z0L A;  3N8W B;  4RRY A;  3MQE A;  5COX A;  3RR3 A;  1EQH A;  3Q9K A;  4DL1 C;  3KRK A;  3ZS0 C;  5IKT A;  5JW1 A;  4OTY A;  4LJJ A;  1DIY A;  1PTH A;  3ERH A;  3NIU A;  3QH0 A;  3GC1 A;  2PUM A;  3MDL A;  4PH9 A;  4KVK A;  4RS0 A;  1D5L C;  3OGW A;  4COX A;  4KSZ A;  1CXP C;  3KK6 A;  1CX2 A;  3GCL A;  3Q7D A;  1MHL C;  2GJM A;  4KVJ A;  5FDQ A;  3N8Y A;  4GM7 A;  3LN1 A;  3OLU A;  4HHS A;  2OYU P;  5GLS A;  1PGE A;  1EBV A;  3I6N A;  5IKR A;  3F9P C;  3HS6 A;  1IGZ A;  3N8X A;  1Q4G A;  4OEK A;  3PGH A;  4FM5 A;  3GCJ A;  5IKV A;  2EHA A;  3NT1 A;  2QQT A;  1IGX A;  3N8Z A;  3NTB A;  4RUT A;  5KIR A;  3TGY A;  2IPS A;  3SXV A;  4KVL A;  4E1G A;  3R55 A;  4N7A A;  1DDX A;  1HT8 A;  4O1Z A;  1PXX A;  3ZS1 C;  3N8W A;  4PNX A;  3S4F A;  2NQX A;  3QL6 A;  4C1M C;  2E9E A;  3HS5 A;  3NYH A;  2OYE P;  4MSF A;  3UBA A;  5FF1 A;  2EFB A;  3NAK A;  6COX A;  2O86 A;  3LN0 A;  3PY4 A;  3V6Q A;  4RRZ A;  4HHR A;  2IKC A;  3RKE A;  5JVZ A;  2QRB A;  4QYQ A;  4NJB A;  4OTJ A;  2Z5Z A;  3N8V A;  3KRQ A;  5B72 A;  3NTG A;  1DNU C;  4RRX A;  1CVU A;  3FAQ A;  5F19 A;  1MYP C;  2R5L A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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