The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
23
|
sequence length |
85
|
structure length |
85
|
Chain Sequence |
PAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPNDLKP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Accommodating a Non-Conservative Internal Mutation by Water-Mediated Hydrogen-Bonding Between beta-Sheet Strands: A Comparison of Human and Rat Type B (Mitochondrial) Cytochrome b5
pubmed doi rcsb |
| molecule tags |
Electron transport
|
| source organism |
Rattus norvegicus
|
| molecule keywords |
Cytochrome b5 type B
|
| total genus |
23
|
| structure length |
85
|
| sequence length |
85
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2010-05-03 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00173 | Cyt-b5 | Cytochrome b5-like Heme/Steroid binding domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Roll | Flavocytochrome B2; Chain A, domain 1 | Cytochrome b5-like heme/steroid binding domain |
#chains in the Genus database with same CATH superfamily 1LCO A; 4B8N A; 1I5U A; 4HIN A; 1J03 A; 2I96 A; 2AXX A; 3OZZ B; 1F03 A; 1IB7 A; 1NX7 A; 2OZ0 A; 3X34 A; 1B5A A; 1M59 A; 1BFX A; 1IET A; 1J0Q A; 1CXY A; 2IBJ A; 3X35 A; 1MNY A; 1AWP A; 1B5B A; 2KEO A; 1LR6 A; 1EHB A; 1LDC A; 4HIL A; 1U9U A; 1LJ0 A; 1MJ4 A; 1SOX A; 1M2I A; 3KS0 A; 1AW3 A; 1LTD A; 1I87 A; 1SH4 A; 1U9M A; 3NER A; 1LQX A; 1M20 A; 1HKO A; 2M33 A; 2I89 A; 3X33 A; 3X32 A; 1B5M A; 1FCB A; 1T0G A; 4X8Y A; 1IEU A; 1KBI A; 3LF5 A; 1DO9 A; 1JEX A; 1ES1 A; 1AQA A; 1BLV A; 1EUE A; 1CYO A; 3MUS A; 1F04 A; 1ICC A; 1X3X A; 1AXX A; 1M2M A; 1I8C A; #chains in the Genus database with same CATH topology 1LCO A; 4B8N A; 1I5U A; 4HIN A; 1J03 A; 2I96 A; 2AXX A; 3OZZ B; 1F03 A; 1IB7 A; 1NX7 A; 2OZ0 A; 3X34 A; 1B5A A; 1M59 A; 1BFX A; 1IET A; 1J0Q A; 1CXY A; 2IBJ A; 3X35 A; 1MNY A; 1AWP A; 1B5B A; 2KEO A; 1LR6 A; 1EHB A; 1LDC A; 4HIL A; 1U9U A; 1LJ0 A; 1MJ4 A; 1SOX A; 1M2I A; 3KS0 A; 1AW3 A; 1LTD A; 1I87 A; 1SH4 A; 1U9M A; 3NER A; 1LQX A; 1M20 A; 1HKO A; 2M33 A; 2I89 A; 3X33 A; 3X32 A; 1B5M A; 1FCB A; 1T0G A; 4X8Y A; 1IEU A; 1KBI A; 3LF5 A; 1DO9 A; 1JEX A; 1ES1 A; 1AQA A; 1BLV A; 1EUE A; 1CYO A; 3MUS A; 1F04 A; 1ICC A; 1X3X A; 1AXX A; 1M2M A; 1I8C A; #chains in the Genus database with same CATH homology 1LCO A; 4B8N A; 1I5U A; 4HIN A; 1J03 A; 2I96 A; 2AXX A; 3OZZ B; 1F03 A; 1IB7 A; 1NX7 A; 2OZ0 A; 3X34 A; 1B5A A; 1M59 A; 1BFX A; 1IET A; 1J0Q A; 1CXY A; 2IBJ A; 3X35 A; 1MNY A; 1AWP A; 1B5B A; 2KEO A; 1LR6 A; 1EHB A; 1LDC A; 4HIL A; 1U9U A; 1LJ0 A; 1MJ4 A; 1SOX A; 1M2I A; 3KS0 A; 1AW3 A; 1LTD A; 1I87 A; 1SH4 A; 1U9M A; 3NER A; 1LQX A; 1M20 A; 1HKO A; 2M33 A; 2I89 A; 3X33 A; 3X32 A; 1B5M A; 1FCB A; 1T0G A; 4X8Y A; 1IEU A; 1KBI A; 3LF5 A; 1DO9 A; 1JEX A; 1ES1 A; 1AQA A; 1BLV A; 1EUE A; 1CYO A; 3MUS A; 1F04 A; 1ICC A; 1X3X A; 1AXX A; 1M2M A; 1I8C A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
