3MUS | Genus

Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	23
sequence length	85
structure length	85
Chain Sequence	PAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPNDLKP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cff95a1b8ec2d8fedb213f4/pdb.gz): 1338 ms

reading 85 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

85 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 18 ms

Adding embedded #jmolscript: select ({0:84});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Electron transport
source organism	Rattus norvegicus
publication title	Accommodating a Non-Conservative Internal Mutation by Water-Mediated Hydrogen-Bonding Between beta-Sheet Strands: A Comparison of Human and Rat Type B (Mitochondrial) Cytochrome b5 pubmed doi rcsb
molecule keywords	Cytochrome b5 type B
total genus	23
structure length	85
sequence length	85
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-05-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00173	Cyt-b5	Cytochrome b5-like Heme/Steroid binding domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.10.120.10	Alpha Beta	Roll	Flavocytochrome B2; Chain A, domain 1	Cytochrome b5-like heme/steroid binding domain	3musA00

4X8YA 1I8CA 1CYOA 1MNYA 1NX7A 1LCOA 2AXXA 4HINA 1IEUA 1LTDA 1LJ0A 2IBJA 3MUSA 1ICCA 1FCBA 1M2IA 2KEOA 1AWPA 1MJ4A 1BLVA 1B5MA 3X34A 1BFXA 3X33A 1JEXA 1LR6A 1SOXA 1M20A 1I5UA 1SH4A 3NERA 1B5AA 1M59A 1U9UA 3KS0A 1AXXA 1T0GA 1KBIA 1J03A 1J0QA 1IETA 1ES1A 3X35A 1M2MA 3X32A 3OZZB 4B8NA 1HKOA 1U9MA 1EHBA 1DO9A 1I87A 1IB7A 4HILA 1F04A 1AW3A 2I96A 1LQXA 2I89A 1AQAA 1CXYA 1EUEA 2OZ0A 1F03A 3LF5A 1B5BA 2M33A 1LDCA 1X3XA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 4X8Y A;  1I8C A;  1CYO A;  1MNY A;  1NX7 A;  1LCO A;  2AXX A;  4HIN A;  1IEU A;  1LTD A;  1LJ0 A;  2IBJ A;  3MUS A;  1ICC A;  1FCB A;  1M2I A;  2KEO A;  1AWP A;  1MJ4 A;  1BLV A;  1B5M A;  3X34 A;  1BFX A;  3X33 A;  1JEX A;  1LR6 A;  1SOX A;  1M20 A;  1I5U A;  1SH4 A;  3NER A;  1B5A A;  1M59 A;  1U9U A;  3KS0 A;  1AXX A;  1T0G A;  1KBI A;  1J03 A;  1J0Q A;  1IET A;  1ES1 A;  3X35 A;  1M2M A;  3X32 A;  3OZZ B;  4B8N A;  1HKO A;  1U9M A;  1EHB A;  1DO9 A;  1I87 A;  1IB7 A;  4HIL A;  1F04 A;  1AW3 A;  2I96 A;  1LQX A;  2I89 A;  1AQA A;  1CXY A;  1EUE A;  2OZ0 A;  1F03 A;  3LF5 A;  1B5B A;  2M33 A;  1LDC A;  1X3X A; 
#chains in the Genus database with same CATH topology
 4X8Y A;  1I8C A;  1CYO A;  1MNY A;  1NX7 A;  1LCO A;  2AXX A;  4HIN A;  1IEU A;  1LTD A;  1LJ0 A;  2IBJ A;  3MUS A;  1ICC A;  1FCB A;  1M2I A;  2KEO A;  1AWP A;  1MJ4 A;  1BLV A;  1B5M A;  3X34 A;  1BFX A;  3X33 A;  1JEX A;  1LR6 A;  1SOX A;  1M20 A;  1I5U A;  1SH4 A;  3NER A;  1B5A A;  1M59 A;  1U9U A;  3KS0 A;  1AXX A;  1T0G A;  1KBI A;  1J03 A;  1J0Q A;  1IET A;  1ES1 A;  3X35 A;  1M2M A;  3X32 A;  3OZZ B;  4B8N A;  1HKO A;  1U9M A;  1EHB A;  1DO9 A;  1I87 A;  1IB7 A;  4HIL A;  1F04 A;  1AW3 A;  2I96 A;  1LQX A;  2I89 A;  1AQA A;  1CXY A;  1EUE A;  2OZ0 A;  1F03 A;  3LF5 A;  1B5B A;  2M33 A;  1LDC A;  1X3X A; 
#chains in the Genus database with same CATH homology
 4X8Y A;  1I8C A;  1CYO A;  1MNY A;  1NX7 A;  1LCO A;  2AXX A;  4HIN A;  1IEU A;  1LTD A;  1LJ0 A;  2IBJ A;  3MUS A;  1ICC A;  1FCB A;  1M2I A;  2KEO A;  1AWP A;  1MJ4 A;  1BLV A;  1B5M A;  3X34 A;  1BFX A;  3X33 A;  1JEX A;  1LR6 A;  1SOX A;  1M20 A;  1I5U A;  1SH4 A;  3NER A;  1B5A A;  1M59 A;  1U9U A;  3KS0 A;  1AXX A;  1T0G A;  1KBI A;  1J03 A;  1J0Q A;  1IET A;  1ES1 A;  3X35 A;  1M2M A;  3X32 A;  3OZZ B;  4B8N A;  1HKO A;  1U9M A;  1EHB A;  1DO9 A;  1I87 A;  1IB7 A;  4HIL A;  1F04 A;  1AW3 A;  2I96 A;  1LQX A;  2I89 A;  1AQA A;  1CXY A;  1EUE A;  2OZ0 A;  1F03 A;  3LF5 A;  1B5B A;  2M33 A;  1LDC A;  1X3X A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3MUSA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations