3OGWA

Structure of the complex of bovine lactoperoxidase with indomethacin at 1.9a resolution
Total Genus 186
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
186
sequence length
595
structure length
594
Chain Sequence
SWEVGCGAPVPLVKCDENSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLALPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSNEHSKTQCEEYCIQGDNCFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLAREQINAVTSFLDASLVYGSEPLASRLRNLSSPLGLMAVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAGDFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKKSKLMNQDKMVTSELRNKLFQPTHKIHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQTVLKNKILAKKLMDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSTVDKLDLSPWASREN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
publication title Structure of the complex of bovine lactoperoxidase with indomethacin at 1.9A resolution
rcsb
molecule tags Oxidoreductase
molecule keywords Lactoperoxidase
total genus 186
structure length 594
sequence length 595
ec nomenclature ec 1.11.1.7: Peroxidase.
pdb deposition date 2010-08-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03098 An_peroxidase Animal haem peroxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.640.10 Mainly Alpha Orthogonal Bundle Myeloperoxidase, subunit C Haem peroxidase domain superfamily, animal type 3ogwA00
4PNXA 3N8ZA 1D2VC 3NAKA 4IG5A 1HT5A 2NQXA 2R5LA 4COXA 4Z0LA 1PGEA 2IPSA 3OGWA 3F9PC 6COXA 4QJQA 4RRYA 4FM5A 1FE2A 3GCLA 3FNLA 3MQEA 4KVKA 5F19A 3BXIA 3Q7DA 1HT8A 5JVYA 5KIRA 1EBVA 3OLTA 3NIUA 3HS5A 1DDXA 5JVZA 4MSFA 4NT3A 3LN1A 4RRXA 1CQEA 4GM7A 5IKVA 3NYHA 4HHRA 1U67A 3PY4A 4RUTA 4OTYA 4GN6A 2OYEP 2O86A 2IKCA 2OYUP 1CVUA 3QMOA 3QH0A 4KVLA 3V6QA 3OLUA 1EQGA 3N8WB 4OTJA 5IKRA 3N8VA 3KRQA 5JW1A 5IKTA 4RS0A 1MHLC 2AYLA 3N8WA 3ERIA 4RRWA 3S4FA 5FDQA 4C1MC 2EFBA 3I6NA 3ZS1C 4DL1C 1IGZA 4PH9A 3ZS0C 1IGXA 2Z5ZA 3KRKA 1Q4GA 4M11A 3R5OA 2QQTA 3R4XA 1DNWC 2GJMA 3FAQA 2E9EA 1D7WC 2EHAA 3R55A 3QF1A 3N8XA 4QYQA 3RR3A 3NT1A 3UBAA 3GC1A 3HS7A 3GCKA 3Q9KA 3N8YA 2QPKA 1D5LC 3MDLA 3HS6A 1CXPC 1DNUC 2PUMA 5B72A 3LN0A 1PXXA 1PRHA 1MYPC 4RRZA 5F1AA 1CX2A 4KSZA 4HHSA 4O1ZA 3TGYA 5GLSA 3N8FA 2QRBA 3TZIA 5GH0A 5FF1A 3RKEA 3R5QA 1DIYA 4M10A 4LJJA 5IKQA 1EQHA 3N8YB 4NJBA 5HPWA 3NTBA 2OJVA 5FIWC 3ERHA 4N7AA 3PGHA 1PTHA 3QL6A 4OEKA 4KVJA 2PT3A 5COXA 3KK6A 4Y55A 3GCJA 3SXVA 4E1GA 3NTGA
chains in the Genus database with same CATH superfamily
4PNXA 3N8ZA 1D2VC 3NAKA 4IG5A 1HT5A 2NQXA 2R5LA 4COXA 4Z0LA 1PGEA 2IPSA 3OGWA 3F9PC 6COXA 4QJQA 4RRYA 4FM5A 1FE2A 3GCLA 3FNLA 3MQEA 4KVKA 5F19A 3BXIA 3Q7DA 1HT8A 5JVYA 5KIRA 1EBVA 3OLTA 3NIUA 3HS5A 1DDXA 5JVZA 4MSFA 4NT3A 3LN1A 4RRXA 1CQEA 4GM7A 5IKVA 3NYHA 4HHRA 1U67A 3PY4A 4RUTA 4OTYA 4GN6A 2OYEP 2O86A 2IKCA 2OYUP 1CVUA 3QMOA 3QH0A 4KVLA 3V6QA 3OLUA 1EQGA 3N8WB 4OTJA 5IKRA 3N8VA 3KRQA 5JW1A 5IKTA 4RS0A 1MHLC 2AYLA 3N8WA 3ERIA 4RRWA 3S4FA 5FDQA 4C1MC 2EFBA 3I6NA 3ZS1C 4DL1C 1IGZA 4PH9A 3ZS0C 1IGXA 2Z5ZA 3KRKA 1Q4GA 4M11A 3R5OA 2QQTA 3R4XA 1DNWC 2GJMA 3FAQA 2E9EA 1D7WC 2EHAA 3R55A 3QF1A 3N8XA 4QYQA 3RR3A 3NT1A 3UBAA 3GC1A 3HS7A 3GCKA 3Q9KA 3N8YA 2QPKA 1D5LC 3MDLA 3HS6A 1CXPC 1DNUC 2PUMA 5B72A 3LN0A 1PXXA 1PRHA 1MYPC 4RRZA 5F1AA 1CX2A 4KSZA 4HHSA 4O1ZA 3TGYA 5GLSA 3N8FA 2QRBA 3TZIA 5GH0A 5FF1A 3RKEA 3R5QA 1DIYA 4M10A 4LJJA 5IKQA 1EQHA 3N8YB 4NJBA 5HPWA 3NTBA 2OJVA 5FIWC 3ERHA 4N7AA 3PGHA 1PTHA 3QL6A 4OEKA 4KVJA 2PT3A 5COXA 3KK6A 4Y55A 3GCJA 3SXVA 4E1GA 3NTGA
chains in the Genus database with same CATH topology
4PNXA 3N8ZA 1D2VC 3NAKA 4IG5A 1HT5A 2NQXA 2R5LA 4COXA 4Z0LA 1PGEA 2IPSA 3OGWA 3F9PC 6COXA 4QJQA 4RRYA 4FM5A 1FE2A 3GCLA 3FNLA 3MQEA 4KVKA 5F19A 3BXIA 3Q7DA 1HT8A 5JVYA 5KIRA 1EBVA 3OLTA 3NIUA 3HS5A 1DDXA 5JVZA 4MSFA 4NT3A 3LN1A 4RRXA 1CQEA 4GM7A 5IKVA 3NYHA 4HHRA 1U67A 3PY4A 4RUTA 4OTYA 4GN6A 2OYEP 2O86A 2IKCA 2OYUP 1CVUA 3QMOA 3QH0A 4KVLA 3V6QA 3OLUA 1EQGA 3N8WB 4OTJA 5IKRA 3N8VA 3KRQA 5JW1A 5IKTA 4RS0A 1MHLC 2AYLA 3N8WA 3ERIA 4RRWA 3S4FA 5FDQA 4C1MC 2EFBA 3I6NA 3ZS1C 4DL1C 1IGZA 4PH9A 3ZS0C 1IGXA 2Z5ZA 3KRKA 1Q4GA 4M11A 3R5OA 2QQTA 3R4XA 1DNWC 2GJMA 3FAQA 2E9EA 1D7WC 2EHAA 3R55A 3QF1A 3N8XA 4QYQA 3RR3A 3NT1A 3UBAA 3GC1A 3HS7A 3GCKA 3Q9KA 3N8YA 2QPKA 1D5LC 3MDLA 3HS6A 1CXPC 1DNUC 2PUMA 5B72A 3LN0A 1PXXA 1PRHA 1MYPC 4RRZA 5F1AA 1CX2A 4KSZA 4HHSA 4O1ZA 3TGYA 5GLSA 3N8FA 2QRBA 3TZIA 5GH0A 5FF1A 3RKEA 3R5QA 1DIYA 4M10A 4LJJA 5IKQA 1EQHA 3N8YB 4NJBA 5HPWA 3NTBA 2OJVA 5FIWC 3ERHA 4N7AA 3PGHA 1PTHA 3QL6A 4OEKA 4KVJA 2PT3A 5COXA 3KK6A 4Y55A 3GCJA 3SXVA 4E1GA 3NTGA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 4PNX A;  3N8Z A;  1D2V C;  3NAK A;  4IG5 A;  1HT5 A;  2NQX A;  2R5L A;  4COX A;  4Z0L A;  1PGE A;  2IPS A;  3OGW A;  3F9P C;  6COX A;  4QJQ A;  4RRY A;  4FM5 A;  1FE2 A;  3GCL A;  3FNL A;  3MQE A;  4KVK A;  5F19 A;  3BXI A;  3Q7D A;  1HT8 A;  5JVY A;  5KIR A;  1EBV A;  3OLT A;  3NIU A;  3HS5 A;  1DDX A;  5JVZ A;  4MSF A;  4NT3 A;  3LN1 A;  4RRX A;  1CQE A;  4GM7 A;  5IKV A;  3NYH A;  4HHR A;  1U67 A;  3PY4 A;  4RUT A;  4OTY A;  4GN6 A;  2OYE P;  2O86 A;  2IKC A;  2OYU P;  1CVU A;  3QMO A;  3QH0 A;  4KVL A;  3V6Q A;  3OLU A;  1EQG A;  3N8W B;  4OTJ A;  5IKR A;  3N8V A;  3KRQ A;  5JW1 A;  5IKT A;  4RS0 A;  1MHL C;  2AYL A;  3N8W A;  3ERI A;  4RRW A;  3S4F A;  5FDQ A;  4C1M C;  2EFB A;  3I6N A;  3ZS1 C;  4DL1 C;  1IGZ A;  4PH9 A;  3ZS0 C;  1IGX A;  2Z5Z A;  3KRK A;  1Q4G A;  4M11 A;  3R5O A;  2QQT A;  3R4X A;  1DNW C;  2GJM A;  3FAQ A;  2E9E A;  1D7W C;  2EHA A;  3R55 A;  3QF1 A;  3N8X A;  4QYQ A;  3RR3 A;  3NT1 A;  3UBA A;  3GC1 A;  3HS7 A;  3GCK A;  3Q9K A;  3N8Y A;  2QPK A;  1D5L C;  3MDL A;  3HS6 A;  1CXP C;  1DNU C;  2PUM A;  5B72 A;  3LN0 A;  1PXX A;  1PRH A;  1MYP C;  4RRZ A;  5F1A A;  1CX2 A;  4KSZ A;  4HHS A;  4O1Z A;  3TGY A;  5GLS A;  3N8F A;  2QRB A;  3TZI A;  5GH0 A;  5FF1 A;  3RKE A;  3R5Q A;  1DIY A;  4M10 A;  4LJJ A;  5IKQ A;  1EQH A;  3N8Y B;  4NJB A;  5HPW A;  3NTB A;  2OJV A;  5FIW C;  3ERH A;  4N7A A;  3PGH A;  1PTH A;  3QL6 A;  4OEK A;  4KVJ A;  2PT3 A;  5COX A;  3KK6 A;  4Y55 A;  3GCJ A;  3SXV A;  4E1G A;  3NTG A; 
#chains in the Genus database with same CATH topology
 4PNX A;  3N8Z A;  1D2V C;  3NAK A;  4IG5 A;  1HT5 A;  2NQX A;  2R5L A;  4COX A;  4Z0L A;  1PGE A;  2IPS A;  3OGW A;  3F9P C;  6COX A;  4QJQ A;  4RRY A;  4FM5 A;  1FE2 A;  3GCL A;  3FNL A;  3MQE A;  4KVK A;  5F19 A;  3BXI A;  3Q7D A;  1HT8 A;  5JVY A;  5KIR A;  1EBV A;  3OLT A;  3NIU A;  3HS5 A;  1DDX A;  5JVZ A;  4MSF A;  4NT3 A;  3LN1 A;  4RRX A;  1CQE A;  4GM7 A;  5IKV A;  3NYH A;  4HHR A;  1U67 A;  3PY4 A;  4RUT A;  4OTY A;  4GN6 A;  2OYE P;  2O86 A;  2IKC A;  2OYU P;  1CVU A;  3QMO A;  3QH0 A;  4KVL A;  3V6Q A;  3OLU A;  1EQG A;  3N8W B;  4OTJ A;  5IKR A;  3N8V A;  3KRQ A;  5JW1 A;  5IKT A;  4RS0 A;  1MHL C;  2AYL A;  3N8W A;  3ERI A;  4RRW A;  3S4F A;  5FDQ A;  4C1M C;  2EFB A;  3I6N A;  3ZS1 C;  4DL1 C;  1IGZ A;  4PH9 A;  3ZS0 C;  1IGX A;  2Z5Z A;  3KRK A;  1Q4G A;  4M11 A;  3R5O A;  2QQT A;  3R4X A;  1DNW C;  2GJM A;  3FAQ A;  2E9E A;  1D7W C;  2EHA A;  3R55 A;  3QF1 A;  3N8X A;  4QYQ A;  3RR3 A;  3NT1 A;  3UBA A;  3GC1 A;  3HS7 A;  3GCK A;  3Q9K A;  3N8Y A;  2QPK A;  1D5L C;  3MDL A;  3HS6 A;  1CXP C;  1DNU C;  2PUM A;  5B72 A;  3LN0 A;  1PXX A;  1PRH A;  1MYP C;  4RRZ A;  5F1A A;  1CX2 A;  4KSZ A;  4HHS A;  4O1Z A;  3TGY A;  5GLS A;  3N8F A;  2QRB A;  3TZI A;  5GH0 A;  5FF1 A;  3RKE A;  3R5Q A;  1DIY A;  4M10 A;  4LJJ A;  5IKQ A;  1EQH A;  3N8Y B;  4NJB A;  5HPW A;  3NTB A;  2OJV A;  5FIW C;  3ERH A;  4N7A A;  3PGH A;  1PTH A;  3QL6 A;  4OEK A;  4KVJ A;  2PT3 A;  5COX A;  3KK6 A;  4Y55 A;  3GCJ A;  3SXV A;  4E1G A;  3NTG A; 
#chains in the Genus database with same CATH homology
 4PNX A;  3N8Z A;  1D2V C;  3NAK A;  4IG5 A;  1HT5 A;  2NQX A;  2R5L A;  4COX A;  4Z0L A;  1PGE A;  2IPS A;  3OGW A;  3F9P C;  6COX A;  4QJQ A;  4RRY A;  4FM5 A;  1FE2 A;  3GCL A;  3FNL A;  3MQE A;  4KVK A;  5F19 A;  3BXI A;  3Q7D A;  1HT8 A;  5JVY A;  5KIR A;  1EBV A;  3OLT A;  3NIU A;  3HS5 A;  1DDX A;  5JVZ A;  4MSF A;  4NT3 A;  3LN1 A;  4RRX A;  1CQE A;  4GM7 A;  5IKV A;  3NYH A;  4HHR A;  1U67 A;  3PY4 A;  4RUT A;  4OTY A;  4GN6 A;  2OYE P;  2O86 A;  2IKC A;  2OYU P;  1CVU A;  3QMO A;  3QH0 A;  4KVL A;  3V6Q A;  3OLU A;  1EQG A;  3N8W B;  4OTJ A;  5IKR A;  3N8V A;  3KRQ A;  5JW1 A;  5IKT A;  4RS0 A;  1MHL C;  2AYL A;  3N8W A;  3ERI A;  4RRW A;  3S4F A;  5FDQ A;  4C1M C;  2EFB A;  3I6N A;  3ZS1 C;  4DL1 C;  1IGZ A;  4PH9 A;  3ZS0 C;  1IGX A;  2Z5Z A;  3KRK A;  1Q4G A;  4M11 A;  3R5O A;  2QQT A;  3R4X A;  1DNW C;  2GJM A;  3FAQ A;  2E9E A;  1D7W C;  2EHA A;  3R55 A;  3QF1 A;  3N8X A;  4QYQ A;  3RR3 A;  3NT1 A;  3UBA A;  3GC1 A;  3HS7 A;  3GCK A;  3Q9K A;  3N8Y A;  2QPK A;  1D5L C;  3MDL A;  3HS6 A;  1CXP C;  1DNU C;  2PUM A;  5B72 A;  3LN0 A;  1PXX A;  1PRH A;  1MYP C;  4RRZ A;  5F1A A;  1CX2 A;  4KSZ A;  4HHS A;  4O1Z A;  3TGY A;  5GLS A;  3N8F A;  2QRB A;  3TZI A;  5GH0 A;  5FF1 A;  3RKE A;  3R5Q A;  1DIY A;  4M10 A;  4LJJ A;  5IKQ A;  1EQH A;  3N8Y B;  4NJB A;  5HPW A;  3NTB A;  2OJV A;  5FIW C;  3ERH A;  4N7A A;  3PGH A;  1PTH A;  3QL6 A;  4OEK A;  4KVJ A;  2PT3 A;  5COX A;  3KK6 A;  4Y55 A;  3GCJ A;  3SXV A;  4E1G A;  3NTG A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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