3QF1A

Crystal structure of the complex of caprine lactoperoxidase with diethylenediamine at 2.6a resolution
Total Genus 179
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
179
sequence length
595
structure length
594
Chain Sequence
SWEVGCGAPVPLVTCDEQSPYRTITGDCNNRRSPALGAANRALARWLPAEYEDGLAVPFGWTQRKTRNGFRVPLAREVSNKIVGYLDEEGVLDQNRSLLFMQWGQIVDHDLDFAPETELGSSEHSKVQCEEYCVQGDECFPIMFPKNDPKLKTQGKCMPFFRAGFVCPTPPYQSLARDQINAVTSFLDASLVYGSEPLASRLRNLSSPLGLMAVNQEAWDHGLAYPPFNNVKPSPCEFINTTAHVPCFQAGDSRASEQILLATVHTLLLREHNRLARELKRLNPHWDGEMLYQEARKILGAFIQIITFRDYLPIVLGSEMQKWIPPYQGYNNSVDPRISNVFTFAFRFGHMEVPSTVSRLDENYQPWGPEAELPLHTLFFNTWRIIKDGGIDPLVRGLLAKNSKLMNQNKMVTSELRNKLFQPTHKVHGFDLAAINLQRCRDHGMPGYNSWRGFCGLSQPKTLKGLQAVLKNKVLAKKLLDLYKTPDNIDIWIGGNAEPMVERGRVGPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAFQANNYPHDFVDCSAVDKLDLSPWASREN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of the complex of caprine lactoperoxidase with diethylenediamine at 2.6A resolution
rcsb
molecule tags Oxidoreductase
molecule keywords Lactoperoxidase
total genus 179
structure length 594
sequence length 595
ec nomenclature ec 1.11.1.7: Peroxidase.
pdb deposition date 2011-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03098 An_peroxidase Animal haem peroxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.640.10 Mainly Alpha Orthogonal Bundle Myeloperoxidase, subunit C Haem peroxidase domain superfamily, animal type 3qf1A00
1FE2A 1DNWC 3RR3A 2Z5ZA 5KIRA 5FDQA 4RRYA 4QJQA 1PTHA 2EHAA 4PNXA 3S4FA 1MHLC 2OYUP 3NT1A 3QL6A 1PRHA 3ERIA 1MYPC 1DDXA 3KK6A 3N8YB 4O1ZA 4KVKA 1EQGA 2QPKA 5F1AA 3V6QA 4RRWA 4RRXA 5FF1A 1D5LC 5IKRA 6COXA 3KRQA 4OEKA 3HS5A 3NYHA 5B72A 4E1GA 1Q4GA 4FM5A 3FNLA 2EFBA 1U67A 4GN6A 2OYEP 3BXIA 5F19A 4COXA 3KRKA 4NJBA 2OJVA 4KSZA 1D2VC 3NTBA 3MQEA 4KVJA 3TGYA 2QRBA 4RUTA 4LJJA 3ZS1C 2IKCA 4HHSA 2PUMA 5JVYA 4OTJA 3UBAA 3GCJA 1EBVA 3R4XA 3ERHA 1HT8A 3OLTA 3ZS0C 4DL1C 1D7WC 1HT5A 5IKVA 2IPSA 4IG5A 3GC1A 3I6NA 5HPWA 3HS7A 2GJMA 1CVUA 5JW1A 3FAQA 1EQHA 3Q7DA 3Q9KA 4RRZA 3LN1A 3N8WA 5JVZA 1CXPC 2PT3A 4QYQA 3R5QA 3N8XA 1DIYA 4C1MC 2QQTA 3SXVA 3QH0A 4KVLA 3TZIA 4PH9A 3NTGA 3R55A 3R5OA 1IGZA 1CX2A 3N8VA 5GH0A 4NT3A 4RS0A 1CQEA 3N8YA 3LN0A 3GCLA 5COXA 2E9EA 3F9PC 3OLUA 5GLSA 4Z0LA 3N8FA 3RKEA 3NAKA 3QF1A 3MDLA 5FIWC 5IKTA 4HHRA 2NQXA 4GM7A 1PXXA 1PGEA 4OTYA 2AYLA 3PY4A 4M11A 3PGHA 4MSFA 5IKQA 4Y55A 3OGWA 2O86A 3N8ZA 3HS6A 4N7AA 1DNUC 4M10A 3NIUA 3N8WB 3GCKA 3QMOA 2R5LA 1IGXA
chains in the Genus database with same CATH superfamily
1FE2A 1DNWC 3RR3A 2Z5ZA 5KIRA 5FDQA 4RRYA 4QJQA 1PTHA 2EHAA 4PNXA 3S4FA 1MHLC 2OYUP 3NT1A 3QL6A 1PRHA 3ERIA 1MYPC 1DDXA 3KK6A 3N8YB 4O1ZA 4KVKA 1EQGA 2QPKA 5F1AA 3V6QA 4RRWA 4RRXA 5FF1A 1D5LC 5IKRA 6COXA 3KRQA 4OEKA 3HS5A 3NYHA 5B72A 4E1GA 1Q4GA 4FM5A 3FNLA 2EFBA 1U67A 4GN6A 2OYEP 3BXIA 5F19A 4COXA 3KRKA 4NJBA 2OJVA 4KSZA 1D2VC 3NTBA 3MQEA 4KVJA 3TGYA 2QRBA 4RUTA 4LJJA 3ZS1C 2IKCA 4HHSA 2PUMA 5JVYA 4OTJA 3UBAA 3GCJA 1EBVA 3R4XA 3ERHA 1HT8A 3OLTA 3ZS0C 4DL1C 1D7WC 1HT5A 5IKVA 2IPSA 4IG5A 3GC1A 3I6NA 5HPWA 3HS7A 2GJMA 1CVUA 5JW1A 3FAQA 1EQHA 3Q7DA 3Q9KA 4RRZA 3LN1A 3N8WA 5JVZA 1CXPC 2PT3A 4QYQA 3R5QA 3N8XA 1DIYA 4C1MC 2QQTA 3SXVA 3QH0A 4KVLA 3TZIA 4PH9A 3NTGA 3R55A 3R5OA 1IGZA 1CX2A 3N8VA 5GH0A 4NT3A 4RS0A 1CQEA 3N8YA 3LN0A 3GCLA 5COXA 2E9EA 3F9PC 3OLUA 5GLSA 4Z0LA 3N8FA 3RKEA 3NAKA 3QF1A 3MDLA 5FIWC 5IKTA 4HHRA 2NQXA 4GM7A 1PXXA 1PGEA 4OTYA 2AYLA 3PY4A 4M11A 3PGHA 4MSFA 5IKQA 4Y55A 3OGWA 2O86A 3N8ZA 3HS6A 4N7AA 1DNUC 4M10A 3NIUA 3N8WB 3GCKA 3QMOA 2R5LA 1IGXA
chains in the Genus database with same CATH topology
1FE2A 1DNWC 3RR3A 2Z5ZA 5KIRA 5FDQA 4RRYA 4QJQA 1PTHA 2EHAA 4PNXA 3S4FA 1MHLC 2OYUP 3NT1A 3QL6A 1PRHA 3ERIA 1MYPC 1DDXA 3KK6A 3N8YB 4O1ZA 4KVKA 1EQGA 2QPKA 5F1AA 3V6QA 4RRWA 4RRXA 5FF1A 1D5LC 5IKRA 6COXA 3KRQA 4OEKA 3HS5A 3NYHA 5B72A 4E1GA 1Q4GA 4FM5A 3FNLA 2EFBA 1U67A 4GN6A 2OYEP 3BXIA 5F19A 4COXA 3KRKA 4NJBA 2OJVA 4KSZA 1D2VC 3NTBA 3MQEA 4KVJA 3TGYA 2QRBA 4RUTA 4LJJA 3ZS1C 2IKCA 4HHSA 2PUMA 5JVYA 4OTJA 3UBAA 3GCJA 1EBVA 3R4XA 3ERHA 1HT8A 3OLTA 3ZS0C 4DL1C 1D7WC 1HT5A 5IKVA 2IPSA 4IG5A 3GC1A 3I6NA 5HPWA 3HS7A 2GJMA 1CVUA 5JW1A 3FAQA 1EQHA 3Q7DA 3Q9KA 4RRZA 3LN1A 3N8WA 5JVZA 1CXPC 2PT3A 4QYQA 3R5QA 3N8XA 1DIYA 4C1MC 2QQTA 3SXVA 3QH0A 4KVLA 3TZIA 4PH9A 3NTGA 3R55A 3R5OA 1IGZA 1CX2A 3N8VA 5GH0A 4NT3A 4RS0A 1CQEA 3N8YA 3LN0A 3GCLA 5COXA 2E9EA 3F9PC 3OLUA 5GLSA 4Z0LA 3N8FA 3RKEA 3NAKA 3QF1A 3MDLA 5FIWC 5IKTA 4HHRA 2NQXA 4GM7A 1PXXA 1PGEA 4OTYA 2AYLA 3PY4A 4M11A 3PGHA 4MSFA 5IKQA 4Y55A 3OGWA 2O86A 3N8ZA 3HS6A 4N7AA 1DNUC 4M10A 3NIUA 3N8WB 3GCKA 3QMOA 2R5LA 1IGXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FE2 A;  1DNW C;  3RR3 A;  2Z5Z A;  5KIR A;  5FDQ A;  4RRY A;  4QJQ A;  1PTH A;  2EHA A;  4PNX A;  3S4F A;  1MHL C;  2OYU P;  3NT1 A;  3QL6 A;  1PRH A;  3ERI A;  1MYP C;  1DDX A;  3KK6 A;  3N8Y B;  4O1Z A;  4KVK A;  1EQG A;  2QPK A;  5F1A A;  3V6Q A;  4RRW A;  4RRX A;  5FF1 A;  1D5L C;  5IKR A;  6COX A;  3KRQ A;  4OEK A;  3HS5 A;  3NYH A;  5B72 A;  4E1G A;  1Q4G A;  4FM5 A;  3FNL A;  2EFB A;  1U67 A;  4GN6 A;  2OYE P;  3BXI A;  5F19 A;  4COX A;  3KRK A;  4NJB A;  2OJV A;  4KSZ A;  1D2V C;  3NTB A;  3MQE A;  4KVJ A;  3TGY A;  2QRB A;  4RUT A;  4LJJ A;  3ZS1 C;  2IKC A;  4HHS A;  2PUM A;  5JVY A;  4OTJ A;  3UBA A;  3GCJ A;  1EBV A;  3R4X A;  3ERH A;  1HT8 A;  3OLT A;  3ZS0 C;  4DL1 C;  1D7W C;  1HT5 A;  5IKV A;  2IPS A;  4IG5 A;  3GC1 A;  3I6N A;  5HPW A;  3HS7 A;  2GJM A;  1CVU A;  5JW1 A;  3FAQ A;  1EQH A;  3Q7D A;  3Q9K A;  4RRZ A;  3LN1 A;  3N8W A;  5JVZ A;  1CXP C;  2PT3 A;  4QYQ A;  3R5Q A;  3N8X A;  1DIY A;  4C1M C;  2QQT A;  3SXV A;  3QH0 A;  4KVL A;  3TZI A;  4PH9 A;  3NTG A;  3R55 A;  3R5O A;  1IGZ A;  1CX2 A;  3N8V A;  5GH0 A;  4NT3 A;  4RS0 A;  1CQE A;  3N8Y A;  3LN0 A;  3GCL A;  5COX A;  2E9E A;  3F9P C;  3OLU A;  5GLS A;  4Z0L A;  3N8F A;  3RKE A;  3NAK A;  3QF1 A;  3MDL A;  5FIW C;  5IKT A;  4HHR A;  2NQX A;  4GM7 A;  1PXX A;  1PGE A;  4OTY A;  2AYL A;  3PY4 A;  4M11 A;  3PGH A;  4MSF A;  5IKQ A;  4Y55 A;  3OGW A;  2O86 A;  3N8Z A;  3HS6 A;  4N7A A;  1DNU C;  4M10 A;  3NIU A;  3N8W B;  3GCK A;  3QMO A;  2R5L A;  1IGX A; 
#chains in the Genus database with same CATH topology
 1FE2 A;  1DNW C;  3RR3 A;  2Z5Z A;  5KIR A;  5FDQ A;  4RRY A;  4QJQ A;  1PTH A;  2EHA A;  4PNX A;  3S4F A;  1MHL C;  2OYU P;  3NT1 A;  3QL6 A;  1PRH A;  3ERI A;  1MYP C;  1DDX A;  3KK6 A;  3N8Y B;  4O1Z A;  4KVK A;  1EQG A;  2QPK A;  5F1A A;  3V6Q A;  4RRW A;  4RRX A;  5FF1 A;  1D5L C;  5IKR A;  6COX A;  3KRQ A;  4OEK A;  3HS5 A;  3NYH A;  5B72 A;  4E1G A;  1Q4G A;  4FM5 A;  3FNL A;  2EFB A;  1U67 A;  4GN6 A;  2OYE P;  3BXI A;  5F19 A;  4COX A;  3KRK A;  4NJB A;  2OJV A;  4KSZ A;  1D2V C;  3NTB A;  3MQE A;  4KVJ A;  3TGY A;  2QRB A;  4RUT A;  4LJJ A;  3ZS1 C;  2IKC A;  4HHS A;  2PUM A;  5JVY A;  4OTJ A;  3UBA A;  3GCJ A;  1EBV A;  3R4X A;  3ERH A;  1HT8 A;  3OLT A;  3ZS0 C;  4DL1 C;  1D7W C;  1HT5 A;  5IKV A;  2IPS A;  4IG5 A;  3GC1 A;  3I6N A;  5HPW A;  3HS7 A;  2GJM A;  1CVU A;  5JW1 A;  3FAQ A;  1EQH A;  3Q7D A;  3Q9K A;  4RRZ A;  3LN1 A;  3N8W A;  5JVZ A;  1CXP C;  2PT3 A;  4QYQ A;  3R5Q A;  3N8X A;  1DIY A;  4C1M C;  2QQT A;  3SXV A;  3QH0 A;  4KVL A;  3TZI A;  4PH9 A;  3NTG A;  3R55 A;  3R5O A;  1IGZ A;  1CX2 A;  3N8V A;  5GH0 A;  4NT3 A;  4RS0 A;  1CQE A;  3N8Y A;  3LN0 A;  3GCL A;  5COX A;  2E9E A;  3F9P C;  3OLU A;  5GLS A;  4Z0L A;  3N8F A;  3RKE A;  3NAK A;  3QF1 A;  3MDL A;  5FIW C;  5IKT A;  4HHR A;  2NQX A;  4GM7 A;  1PXX A;  1PGE A;  4OTY A;  2AYL A;  3PY4 A;  4M11 A;  3PGH A;  4MSF A;  5IKQ A;  4Y55 A;  3OGW A;  2O86 A;  3N8Z A;  3HS6 A;  4N7A A;  1DNU C;  4M10 A;  3NIU A;  3N8W B;  3GCK A;  3QMO A;  2R5L A;  1IGX A; 
#chains in the Genus database with same CATH homology
 1FE2 A;  1DNW C;  3RR3 A;  2Z5Z A;  5KIR A;  5FDQ A;  4RRY A;  4QJQ A;  1PTH A;  2EHA A;  4PNX A;  3S4F A;  1MHL C;  2OYU P;  3NT1 A;  3QL6 A;  1PRH A;  3ERI A;  1MYP C;  1DDX A;  3KK6 A;  3N8Y B;  4O1Z A;  4KVK A;  1EQG A;  2QPK A;  5F1A A;  3V6Q A;  4RRW A;  4RRX A;  5FF1 A;  1D5L C;  5IKR A;  6COX A;  3KRQ A;  4OEK A;  3HS5 A;  3NYH A;  5B72 A;  4E1G A;  1Q4G A;  4FM5 A;  3FNL A;  2EFB A;  1U67 A;  4GN6 A;  2OYE P;  3BXI A;  5F19 A;  4COX A;  3KRK A;  4NJB A;  2OJV A;  4KSZ A;  1D2V C;  3NTB A;  3MQE A;  4KVJ A;  3TGY A;  2QRB A;  4RUT A;  4LJJ A;  3ZS1 C;  2IKC A;  4HHS A;  2PUM A;  5JVY A;  4OTJ A;  3UBA A;  3GCJ A;  1EBV A;  3R4X A;  3ERH A;  1HT8 A;  3OLT A;  3ZS0 C;  4DL1 C;  1D7W C;  1HT5 A;  5IKV A;  2IPS A;  4IG5 A;  3GC1 A;  3I6N A;  5HPW A;  3HS7 A;  2GJM A;  1CVU A;  5JW1 A;  3FAQ A;  1EQH A;  3Q7D A;  3Q9K A;  4RRZ A;  3LN1 A;  3N8W A;  5JVZ A;  1CXP C;  2PT3 A;  4QYQ A;  3R5Q A;  3N8X A;  1DIY A;  4C1M C;  2QQT A;  3SXV A;  3QH0 A;  4KVL A;  3TZI A;  4PH9 A;  3NTG A;  3R55 A;  3R5O A;  1IGZ A;  1CX2 A;  3N8V A;  5GH0 A;  4NT3 A;  4RS0 A;  1CQE A;  3N8Y A;  3LN0 A;  3GCL A;  5COX A;  2E9E A;  3F9P C;  3OLU A;  5GLS A;  4Z0L A;  3N8F A;  3RKE A;  3NAK A;  3QF1 A;  3MDL A;  5FIW C;  5IKT A;  4HHR A;  2NQX A;  4GM7 A;  1PXX A;  1PGE A;  4OTY A;  2AYL A;  3PY4 A;  4M11 A;  3PGH A;  4MSF A;  5IKQ A;  4Y55 A;  3OGW A;  2O86 A;  3N8Z A;  3HS6 A;  4N7A A;  1DNU C;  4M10 A;  3NIU A;  3N8W B;  3GCK A;  3QMO A;  2R5L A;  1IGX A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...