4B8NA

Cytochrome b5 of ostreococcus tauri virus 2
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
79
structure length
79
Chain Sequence
PRDLSLTEIAKHNTEEDCWVIIKDIVYDLTKFLPDHPGGKKAIILFAGKDATEEFDMLHPPNVLKKYLTPEVVLGPVKK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Functional and Structural Characterisation of a Viral Cytochrome B5.
pubmed doi rcsb
molecule tags Electron transport
source organism Ostreococcus tauri virus 2
molecule keywords CYTOCHROME B5-HOST ORIGIN
total genus 19
structure length 79
sequence length 79
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-08-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 4b8nA00
1HKOA 1ICCA 1MJ4A 1EUEA 3NERA 1IB7A 1CYOA 1BLVA 1LCOA 1M20A 1SH4A 1NX7A 1LR6A 1U9UA 4X8YA 1IEUA 1SOXA 1ES1A 1JEXA 4HINA 3X33A 1B5MA 2I89A 4HILA 1F04A 3KS0A 1B5AA 1M59A 1I5UA 3X32A 1LQXA 3OZZB 1EHBA 1LTDA 1DO9A 1X3XA 1CXYA 1I87A 1AW3A 2M33A 2AXXA 3X34A 4B8NA 1J0QA 1B5BA 3X35A 1LDCA 1KBIA 1FCBA 2IBJA 1I8CA 1IETA 1F03A 2I96A 2OZ0A 1AXXA 1M2IA 3LF5A 1T0GA 1M2MA 1AQAA 1MNYA 1AWPA 2KEOA 1BFXA 3MUSA 1U9MA 1LJ0A 1J03A
chains in the Genus database with same CATH superfamily
1HKOA 1ICCA 1MJ4A 1EUEA 3NERA 1IB7A 1CYOA 1BLVA 1LCOA 1M20A 1SH4A 1NX7A 1LR6A 1U9UA 4X8YA 1IEUA 1SOXA 1ES1A 1JEXA 4HINA 3X33A 1B5MA 2I89A 4HILA 1F04A 3KS0A 1B5AA 1M59A 1I5UA 3X32A 1LQXA 3OZZB 1EHBA 1LTDA 1DO9A 1X3XA 1CXYA 1I87A 1AW3A 2M33A 2AXXA 3X34A 4B8NA 1J0QA 1B5BA 3X35A 1LDCA 1KBIA 1FCBA 2IBJA 1I8CA 1IETA 1F03A 2I96A 2OZ0A 1AXXA 1M2IA 3LF5A 1T0GA 1M2MA 1AQAA 1MNYA 1AWPA 2KEOA 1BFXA 3MUSA 1U9MA 1LJ0A 1J03A
chains in the Genus database with same CATH topology
1HKOA 1ICCA 1MJ4A 1EUEA 3NERA 1IB7A 1CYOA 1BLVA 1LCOA 1M20A 1SH4A 1NX7A 1LR6A 1U9UA 4X8YA 1IEUA 1SOXA 1ES1A 1JEXA 4HINA 3X33A 1B5MA 2I89A 4HILA 1F04A 3KS0A 1B5AA 1M59A 1I5UA 3X32A 1LQXA 3OZZB 1EHBA 1LTDA 1DO9A 1X3XA 1CXYA 1I87A 1AW3A 2M33A 2AXXA 3X34A 4B8NA 1J0QA 1B5BA 3X35A 1LDCA 1KBIA 1FCBA 2IBJA 1I8CA 1IETA 1F03A 2I96A 2OZ0A 1AXXA 1M2IA 3LF5A 1T0GA 1M2MA 1AQAA 1MNYA 1AWPA 2KEOA 1BFXA 3MUSA 1U9MA 1LJ0A 1J03A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HKO A;  1ICC A;  1MJ4 A;  1EUE A;  3NER A;  1IB7 A;  1CYO A;  1BLV A;  1LCO A;  1M20 A;  1SH4 A;  1NX7 A;  1LR6 A;  1U9U A;  4X8Y A;  1IEU A;  1SOX A;  1ES1 A;  1JEX A;  4HIN A;  3X33 A;  1B5M A;  2I89 A;  4HIL A;  1F04 A;  3KS0 A;  1B5A A;  1M59 A;  1I5U A;  3X32 A;  1LQX A;  3OZZ B;  1EHB A;  1LTD A;  1DO9 A;  1X3X A;  1CXY A;  1I87 A;  1AW3 A;  2M33 A;  2AXX A;  3X34 A;  4B8N A;  1J0Q A;  1B5B A;  3X35 A;  1LDC A;  1KBI A;  1FCB A;  2IBJ A;  1I8C A;  1IET A;  1F03 A;  2I96 A;  2OZ0 A;  1AXX A;  1M2I A;  3LF5 A;  1T0G A;  1M2M A;  1AQA A;  1MNY A;  1AWP A;  2KEO A;  1BFX A;  3MUS A;  1U9M A;  1LJ0 A;  1J03 A; 
#chains in the Genus database with same CATH topology
 1HKO A;  1ICC A;  1MJ4 A;  1EUE A;  3NER A;  1IB7 A;  1CYO A;  1BLV A;  1LCO A;  1M20 A;  1SH4 A;  1NX7 A;  1LR6 A;  1U9U A;  4X8Y A;  1IEU A;  1SOX A;  1ES1 A;  1JEX A;  4HIN A;  3X33 A;  1B5M A;  2I89 A;  4HIL A;  1F04 A;  3KS0 A;  1B5A A;  1M59 A;  1I5U A;  3X32 A;  1LQX A;  3OZZ B;  1EHB A;  1LTD A;  1DO9 A;  1X3X A;  1CXY A;  1I87 A;  1AW3 A;  2M33 A;  2AXX A;  3X34 A;  4B8N A;  1J0Q A;  1B5B A;  3X35 A;  1LDC A;  1KBI A;  1FCB A;  2IBJ A;  1I8C A;  1IET A;  1F03 A;  2I96 A;  2OZ0 A;  1AXX A;  1M2I A;  3LF5 A;  1T0G A;  1M2M A;  1AQA A;  1MNY A;  1AWP A;  2KEO A;  1BFX A;  3MUS A;  1U9M A;  1LJ0 A;  1J03 A; 
#chains in the Genus database with same CATH homology
 1HKO A;  1ICC A;  1MJ4 A;  1EUE A;  3NER A;  1IB7 A;  1CYO A;  1BLV A;  1LCO A;  1M20 A;  1SH4 A;  1NX7 A;  1LR6 A;  1U9U A;  4X8Y A;  1IEU A;  1SOX A;  1ES1 A;  1JEX A;  4HIN A;  3X33 A;  1B5M A;  2I89 A;  4HIL A;  1F04 A;  3KS0 A;  1B5A A;  1M59 A;  1I5U A;  3X32 A;  1LQX A;  3OZZ B;  1EHB A;  1LTD A;  1DO9 A;  1X3X A;  1CXY A;  1I87 A;  1AW3 A;  2M33 A;  2AXX A;  3X34 A;  4B8N A;  1J0Q A;  1B5B A;  3X35 A;  1LDC A;  1KBI A;  1FCB A;  2IBJ A;  1I8C A;  1IET A;  1F03 A;  2I96 A;  2OZ0 A;  1AXX A;  1M2I A;  3LF5 A;  1T0G A;  1M2M A;  1AQA A;  1MNY A;  1AWP A;  2KEO A;  1BFX A;  3MUS A;  1U9M A;  1LJ0 A;  1J03 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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