4HHRA

Crystal structure of fatty acid alpha-dioxygenase (arabidopsis thaliana)
Total Genus 258
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
258
sequence length
640
structure length
640
Chain Sequence
SMKVITSLISSILLKFIHKDFHEIYARMSLLDRFLLLIVHGVDKMVPWHKLPVFLGLTYLEVRRHLHQQYNLLNVGQTPTGIRFDPANYPYRTADGKFNDPFNEGVGSQNSFFGRNCPPVDQKSKLRRPDPMVVATKLLGRKKFIDTGKQFNMIAASWIQFMIHDWIDHLEDTHQIELVAPKEVASKCPLSSFRFLKTKEVPTGFFEIKTGSQNIRTPWWDSSVIYGSNSKTLDRVRTYKDGKLKISEETGLLLHDEDGLAISGDIRNSWAGVSALQALFIKEHNAVCDALKDEDDDLEDEDLYRYARLVTSAVVAKIHTIDWTVQLLKTDTLLAGMRANWYGLLGKKFKDSFGHAGSSILGGVVGMKKPQNHGVPYSLTEDFTSVYRMHSLLPDQLHILDIDDVPGTNKSLPLIQEISMRDLIGRKGEETMSHIGFTKLMVSMGHQASGALELMNYPMWLRDIVPHDPNGQARPDHVDLAALEIYRDRERSVPRYNEFRRSMFMIPITKWEDLTEDEEAIEVLDDVYDGDVEELDLLVGLMAEKKIKGFAISETAFYIFLIMATRRLEADRFFTSDFNETIYTKKGLEWVNTTESLKDVIDRHYPDMTDKWMNSESAFSVWDSPPLTKNPIPLYLRIPS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title The crystal structure of alpha-Dioxygenase provides insight into diversity in the cyclooxygenase-peroxidase superfamily.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Arabidopsis thaliana
molecule keywords Alpha-dioxygenase
total genus 258
structure length 640
sequence length 640
ec nomenclature
pdb deposition date 2012-10-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03098 An_peroxidase Animal haem peroxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.640.10 Mainly Alpha Orthogonal Bundle Myeloperoxidase, subunit C Haem peroxidase domain superfamily, animal type 4hhrA01
1MHLC 4Y55A 4RUTA 4PNXA 3F9PC 5JVZA 1EBVA 1CX2A 5GLSA 4Z0LA 1U67A 3BXIA 3GCKA 4OTYA 1DNWC 3N8FA 4LJJA 3NTBA 5GH0A 4M10A 3QMOA 1D7WC 3NT1A 3HS6A 1PTHA 3KRQA 3R5QA 3NAKA 1CXPC 2Z5ZA 5F1AA 3GCLA 1IGZA 1PXXA 3Q7DA 2IPSA 4MSFA 3ZS1C 3S4FA 3R5OA 3QL6A 3NIUA 1HT5A 2QQTA 4PH9A 5FF1A 2QRBA 4FM5A 4E1GA 4RRYA 3N8WB 6COXA 1DDXA 4O1ZA 4C1MC 2GJMA 3OLTA 3FNLA 5HPWA 2IKCA 2OJVA 5FIWC 1DNUC 3PGHA 3N8YB 3MQEA 4RS0A 4KSZA 3N8WA 4QJQA 4GM7A 2R5LA 3GC1A 5COXA 1DIYA 1CVUA 3OGWA 5KIRA 4QYQA 2PT3A 4NJBA 3R4XA 4NT3A 3PY4A 3Q9KA 1HT8A 3N8YA 3KK6A 5IKTA 3QH0A 4KVLA 3UBAA 5JVYA 5IKQA 3I6NA 2EFBA 2O86A 1Q4GA 4OEKA 3TZIA 1EQHA 1D5LC 3N8VA 2PUMA 3HS7A 3LN0A 2OYEP 3TGYA 4GN6A 1PGEA 5FDQA 1PRHA 3ERIA 3MDLA 2QPKA 3FAQA 3V6QA 3GCJA 4M11A 4HHSA 4HHRA 1CQEA 3N8ZA 2OYUP 3QF1A 4N7AA 2AYLA 3ZS0C 3R55A 4KVJA 4COXA 4RRXA 3ERHA 4DL1C 3OLUA 3SXVA 2NQXA 5B72A 1D2VC 4IG5A 1IGXA 3LN1A 3N8XA 3RR3A 5IKRA 4OTJA 4RRWA 3NTGA 4RRZA 1FE2A 1EQGA 2E9EA 5IKVA 3HS5A 2EHAA 5F19A 4KVKA 1MYPC 3KRKA 3RKEA 5JW1A 3NYHA
chains in the Genus database with same CATH superfamily
1MHLC 4Y55A 4RUTA 4PNXA 3F9PC 5JVZA 1EBVA 1CX2A 5GLSA 4Z0LA 1U67A 3BXIA 3GCKA 4OTYA 1DNWC 3N8FA 4LJJA 3NTBA 5GH0A 4M10A 3QMOA 1D7WC 3NT1A 3HS6A 1PTHA 3KRQA 3R5QA 3NAKA 1CXPC 2Z5ZA 5F1AA 3GCLA 1IGZA 1PXXA 3Q7DA 2IPSA 4MSFA 3ZS1C 3S4FA 3R5OA 3QL6A 3NIUA 1HT5A 2QQTA 4PH9A 5FF1A 2QRBA 4FM5A 4E1GA 4RRYA 3N8WB 6COXA 1DDXA 4O1ZA 4C1MC 2GJMA 3OLTA 3FNLA 5HPWA 2IKCA 2OJVA 5FIWC 1DNUC 3PGHA 3N8YB 3MQEA 4RS0A 4KSZA 3N8WA 4QJQA 4GM7A 2R5LA 3GC1A 5COXA 1DIYA 1CVUA 3OGWA 5KIRA 4QYQA 2PT3A 4NJBA 3R4XA 4NT3A 3PY4A 3Q9KA 1HT8A 3N8YA 3KK6A 5IKTA 3QH0A 4KVLA 3UBAA 5JVYA 5IKQA 3I6NA 2EFBA 2O86A 1Q4GA 4OEKA 3TZIA 1EQHA 1D5LC 3N8VA 2PUMA 3HS7A 3LN0A 2OYEP 3TGYA 4GN6A 1PGEA 5FDQA 1PRHA 3ERIA 3MDLA 2QPKA 3FAQA 3V6QA 3GCJA 4M11A 4HHSA 4HHRA 1CQEA 3N8ZA 2OYUP 3QF1A 4N7AA 2AYLA 3ZS0C 3R55A 4KVJA 4COXA 4RRXA 3ERHA 4DL1C 3OLUA 3SXVA 2NQXA 5B72A 1D2VC 4IG5A 1IGXA 3LN1A 3N8XA 3RR3A 5IKRA 4OTJA 4RRWA 3NTGA 4RRZA 1FE2A 1EQGA 2E9EA 5IKVA 3HS5A 2EHAA 5F19A 4KVKA 1MYPC 3KRKA 3RKEA 5JW1A 3NYHA
chains in the Genus database with same CATH topology
1MHLC 4Y55A 4RUTA 4PNXA 3F9PC 5JVZA 1EBVA 1CX2A 5GLSA 4Z0LA 1U67A 3BXIA 3GCKA 4OTYA 1DNWC 3N8FA 4LJJA 3NTBA 5GH0A 4M10A 3QMOA 1D7WC 3NT1A 3HS6A 1PTHA 3KRQA 3R5QA 3NAKA 1CXPC 2Z5ZA 5F1AA 3GCLA 1IGZA 1PXXA 3Q7DA 2IPSA 4MSFA 3ZS1C 3S4FA 3R5OA 3QL6A 3NIUA 1HT5A 2QQTA 4PH9A 5FF1A 2QRBA 4FM5A 4E1GA 4RRYA 3N8WB 6COXA 1DDXA 4O1ZA 4C1MC 2GJMA 3OLTA 3FNLA 5HPWA 2IKCA 2OJVA 5FIWC 1DNUC 3PGHA 3N8YB 3MQEA 4RS0A 4KSZA 3N8WA 4QJQA 4GM7A 2R5LA 3GC1A 5COXA 1DIYA 1CVUA 3OGWA 5KIRA 4QYQA 2PT3A 4NJBA 3R4XA 4NT3A 3PY4A 3Q9KA 1HT8A 3N8YA 3KK6A 5IKTA 3QH0A 4KVLA 3UBAA 5JVYA 5IKQA 3I6NA 2EFBA 2O86A 1Q4GA 4OEKA 3TZIA 1EQHA 1D5LC 3N8VA 2PUMA 3HS7A 3LN0A 2OYEP 3TGYA 4GN6A 1PGEA 5FDQA 1PRHA 3ERIA 3MDLA 2QPKA 3FAQA 3V6QA 3GCJA 4M11A 4HHSA 4HHRA 1CQEA 3N8ZA 2OYUP 3QF1A 4N7AA 2AYLA 3ZS0C 3R55A 4KVJA 4COXA 4RRXA 3ERHA 4DL1C 3OLUA 3SXVA 2NQXA 5B72A 1D2VC 4IG5A 1IGXA 3LN1A 3N8XA 3RR3A 5IKRA 4OTJA 4RRWA 3NTGA 4RRZA 1FE2A 1EQGA 2E9EA 5IKVA 3HS5A 2EHAA 5F19A 4KVKA 1MYPC 3KRKA 3RKEA 5JW1A 3NYHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1MHL C;  4Y55 A;  4RUT A;  4PNX A;  3F9P C;  5JVZ A;  1EBV A;  1CX2 A;  5GLS A;  4Z0L A;  1U67 A;  3BXI A;  3GCK A;  4OTY A;  1DNW C;  3N8F A;  4LJJ A;  3NTB A;  5GH0 A;  4M10 A;  3QMO A;  1D7W C;  3NT1 A;  3HS6 A;  1PTH A;  3KRQ A;  3R5Q A;  3NAK A;  1CXP C;  2Z5Z A;  5F1A A;  3GCL A;  1IGZ A;  1PXX A;  3Q7D A;  2IPS A;  4MSF A;  3ZS1 C;  3S4F A;  3R5O A;  3QL6 A;  3NIU A;  1HT5 A;  2QQT A;  4PH9 A;  5FF1 A;  2QRB A;  4FM5 A;  4E1G A;  4RRY A;  3N8W B;  6COX A;  1DDX A;  4O1Z A;  4C1M C;  2GJM A;  3OLT A;  3FNL A;  5HPW A;  2IKC A;  2OJV A;  5FIW C;  1DNU C;  3PGH A;  3N8Y B;  3MQE A;  4RS0 A;  4KSZ A;  3N8W A;  4QJQ A;  4GM7 A;  2R5L A;  3GC1 A;  5COX A;  1DIY A;  1CVU A;  3OGW A;  5KIR A;  4QYQ A;  2PT3 A;  4NJB A;  3R4X A;  4NT3 A;  3PY4 A;  3Q9K A;  1HT8 A;  3N8Y A;  3KK6 A;  5IKT A;  3QH0 A;  4KVL A;  3UBA A;  5JVY A;  5IKQ A;  3I6N A;  2EFB A;  2O86 A;  1Q4G A;  4OEK A;  3TZI A;  1EQH A;  1D5L C;  3N8V A;  2PUM A;  3HS7 A;  3LN0 A;  2OYE P;  3TGY A;  4GN6 A;  1PGE A;  5FDQ A;  1PRH A;  3ERI A;  3MDL A;  2QPK A;  3FAQ A;  3V6Q A;  3GCJ A;  4M11 A;  4HHS A;  4HHR A;  1CQE A;  3N8Z A;  2OYU P;  3QF1 A;  4N7A A;  2AYL A;  3ZS0 C;  3R55 A;  4KVJ A;  4COX A;  4RRX A;  3ERH A;  4DL1 C;  3OLU A;  3SXV A;  2NQX A;  5B72 A;  1D2V C;  4IG5 A;  1IGX A;  3LN1 A;  3N8X A;  3RR3 A;  5IKR A;  4OTJ A;  4RRW A;  3NTG A;  4RRZ A;  1FE2 A;  1EQG A;  2E9E A;  5IKV A;  3HS5 A;  2EHA A;  5F19 A;  4KVK A;  1MYP C;  3KRK A;  3RKE A;  5JW1 A;  3NYH A; 
#chains in the Genus database with same CATH topology
 1MHL C;  4Y55 A;  4RUT A;  4PNX A;  3F9P C;  5JVZ A;  1EBV A;  1CX2 A;  5GLS A;  4Z0L A;  1U67 A;  3BXI A;  3GCK A;  4OTY A;  1DNW C;  3N8F A;  4LJJ A;  3NTB A;  5GH0 A;  4M10 A;  3QMO A;  1D7W C;  3NT1 A;  3HS6 A;  1PTH A;  3KRQ A;  3R5Q A;  3NAK A;  1CXP C;  2Z5Z A;  5F1A A;  3GCL A;  1IGZ A;  1PXX A;  3Q7D A;  2IPS A;  4MSF A;  3ZS1 C;  3S4F A;  3R5O A;  3QL6 A;  3NIU A;  1HT5 A;  2QQT A;  4PH9 A;  5FF1 A;  2QRB A;  4FM5 A;  4E1G A;  4RRY A;  3N8W B;  6COX A;  1DDX A;  4O1Z A;  4C1M C;  2GJM A;  3OLT A;  3FNL A;  5HPW A;  2IKC A;  2OJV A;  5FIW C;  1DNU C;  3PGH A;  3N8Y B;  3MQE A;  4RS0 A;  4KSZ A;  3N8W A;  4QJQ A;  4GM7 A;  2R5L A;  3GC1 A;  5COX A;  1DIY A;  1CVU A;  3OGW A;  5KIR A;  4QYQ A;  2PT3 A;  4NJB A;  3R4X A;  4NT3 A;  3PY4 A;  3Q9K A;  1HT8 A;  3N8Y A;  3KK6 A;  5IKT A;  3QH0 A;  4KVL A;  3UBA A;  5JVY A;  5IKQ A;  3I6N A;  2EFB A;  2O86 A;  1Q4G A;  4OEK A;  3TZI A;  1EQH A;  1D5L C;  3N8V A;  2PUM A;  3HS7 A;  3LN0 A;  2OYE P;  3TGY A;  4GN6 A;  1PGE A;  5FDQ A;  1PRH A;  3ERI A;  3MDL A;  2QPK A;  3FAQ A;  3V6Q A;  3GCJ A;  4M11 A;  4HHS A;  4HHR A;  1CQE A;  3N8Z A;  2OYU P;  3QF1 A;  4N7A A;  2AYL A;  3ZS0 C;  3R55 A;  4KVJ A;  4COX A;  4RRX A;  3ERH A;  4DL1 C;  3OLU A;  3SXV A;  2NQX A;  5B72 A;  1D2V C;  4IG5 A;  1IGX A;  3LN1 A;  3N8X A;  3RR3 A;  5IKR A;  4OTJ A;  4RRW A;  3NTG A;  4RRZ A;  1FE2 A;  1EQG A;  2E9E A;  5IKV A;  3HS5 A;  2EHA A;  5F19 A;  4KVK A;  1MYP C;  3KRK A;  3RKE A;  5JW1 A;  3NYH A; 
#chains in the Genus database with same CATH homology
 1MHL C;  4Y55 A;  4RUT A;  4PNX A;  3F9P C;  5JVZ A;  1EBV A;  1CX2 A;  5GLS A;  4Z0L A;  1U67 A;  3BXI A;  3GCK A;  4OTY A;  1DNW C;  3N8F A;  4LJJ A;  3NTB A;  5GH0 A;  4M10 A;  3QMO A;  1D7W C;  3NT1 A;  3HS6 A;  1PTH A;  3KRQ A;  3R5Q A;  3NAK A;  1CXP C;  2Z5Z A;  5F1A A;  3GCL A;  1IGZ A;  1PXX A;  3Q7D A;  2IPS A;  4MSF A;  3ZS1 C;  3S4F A;  3R5O A;  3QL6 A;  3NIU A;  1HT5 A;  2QQT A;  4PH9 A;  5FF1 A;  2QRB A;  4FM5 A;  4E1G A;  4RRY A;  3N8W B;  6COX A;  1DDX A;  4O1Z A;  4C1M C;  2GJM A;  3OLT A;  3FNL A;  5HPW A;  2IKC A;  2OJV A;  5FIW C;  1DNU C;  3PGH A;  3N8Y B;  3MQE A;  4RS0 A;  4KSZ A;  3N8W A;  4QJQ A;  4GM7 A;  2R5L A;  3GC1 A;  5COX A;  1DIY A;  1CVU A;  3OGW A;  5KIR A;  4QYQ A;  2PT3 A;  4NJB A;  3R4X A;  4NT3 A;  3PY4 A;  3Q9K A;  1HT8 A;  3N8Y A;  3KK6 A;  5IKT A;  3QH0 A;  4KVL A;  3UBA A;  5JVY A;  5IKQ A;  3I6N A;  2EFB A;  2O86 A;  1Q4G A;  4OEK A;  3TZI A;  1EQH A;  1D5L C;  3N8V A;  2PUM A;  3HS7 A;  3LN0 A;  2OYE P;  3TGY A;  4GN6 A;  1PGE A;  5FDQ A;  1PRH A;  3ERI A;  3MDL A;  2QPK A;  3FAQ A;  3V6Q A;  3GCJ A;  4M11 A;  4HHS A;  4HHR A;  1CQE A;  3N8Z A;  2OYU P;  3QF1 A;  4N7A A;  2AYL A;  3ZS0 C;  3R55 A;  4KVJ A;  4COX A;  4RRX A;  3ERH A;  4DL1 C;  3OLU A;  3SXV A;  2NQX A;  5B72 A;  1D2V C;  4IG5 A;  1IGX A;  3LN1 A;  3N8X A;  3RR3 A;  5IKR A;  4OTJ A;  4RRW A;  3NTG A;  4RRZ A;  1FE2 A;  1EQG A;  2E9E A;  5IKV A;  3HS5 A;  2EHA A;  5F19 A;  4KVK A;  1MYP C;  3KRK A;  3RKE A;  5JW1 A;  3NYH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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