4HINA

2.4a resolution structure of bovine cytochrome b5 (s71l)
Total Genus 22

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
81
structure length
81
Chain Sequence
VKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELLKTFIIGELHPDDR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYAH1 (9-14)S1 (6-7)TI7 (80-83)AH2 (43-49)TI1 (17-20)S3 (20-25)TIV1 (24-27)S5 (75-79)AH4 (65-73)S4 (28-31)TI2 (32-35)TI3 (33-36)TI5 (36-39)TII1 (49-52)TI6 (39-42)AH3 (55-61)S2 (16-17)Updating...
connected with : NaN
molecule tags Electron transport
source organism Bos taurus
publication title 2.4A Resolution Structure of Bovine Cytochrome b5 (S71L)
rcsb
molecule keywords Cytochrome b5
total genus 22
structure length 81
sequence length 81
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2012-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 4hinA00
1ICCA 1I87A 1EUEA 1F03A 2OZ0A 1F04A 1FCBA 4HILA 1MNYA 1M59A 3X32A 1CYOA 3X35A 4B8NA 1T0GA 1EHBA 1CXYA 3LF5A 3MUSA 1IEUA 2I96A 1KBIA 1MJ4A 1U9MA 1X3XA 4HINA 1LDCA 1I8CA 1AQAA 1U9UA 1LR6A 1LTDA 1IB7A 2M33A 1I5UA 1NX7A 2KEOA 3OZZB 1AXXA 4X8YA 1LQXA 1AW3A 1M20A 1B5BA 1M2MA 3NERA 1IETA 3X34A 1LJ0A 1B5AA 1JEXA 1AWPA 1ES1A 1B5MA 1LCOA 1J03A 1DO9A 2AXXA 1HKOA 1J0QA 1M2IA 1SOXA 1BLVA 3KS0A 3X33A 2IBJA 1SH4A 2I89A 1BFXA
chains in the Genus database with same CATH superfamily
1ICCA 1I87A 1EUEA 1F03A 2OZ0A 1F04A 1FCBA 4HILA 1MNYA 1M59A 3X32A 1CYOA 3X35A 4B8NA 1T0GA 1EHBA 1CXYA 3LF5A 3MUSA 1IEUA 2I96A 1KBIA 1MJ4A 1U9MA 1X3XA 4HINA 1LDCA 1I8CA 1AQAA 1U9UA 1LR6A 1LTDA 1IB7A 2M33A 1I5UA 1NX7A 2KEOA 3OZZB 1AXXA 4X8YA 1LQXA 1AW3A 1M20A 1B5BA 1M2MA 3NERA 1IETA 3X34A 1LJ0A 1B5AA 1JEXA 1AWPA 1ES1A 1B5MA 1LCOA 1J03A 1DO9A 2AXXA 1HKOA 1J0QA 1M2IA 1SOXA 1BLVA 3KS0A 3X33A 2IBJA 1SH4A 2I89A 1BFXA
chains in the Genus database with same CATH topology
1ICCA 1I87A 1EUEA 1F03A 2OZ0A 1F04A 1FCBA 4HILA 1MNYA 1M59A 3X32A 1CYOA 3X35A 4B8NA 1T0GA 1EHBA 1CXYA 3LF5A 3MUSA 1IEUA 2I96A 1KBIA 1MJ4A 1U9MA 1X3XA 4HINA 1LDCA 1I8CA 1AQAA 1U9UA 1LR6A 1LTDA 1IB7A 2M33A 1I5UA 1NX7A 2KEOA 3OZZB 1AXXA 4X8YA 1LQXA 1AW3A 1M20A 1B5BA 1M2MA 3NERA 1IETA 3X34A 1LJ0A 1B5AA 1JEXA 1AWPA 1ES1A 1B5MA 1LCOA 1J03A 1DO9A 2AXXA 1HKOA 1J0QA 1M2IA 1SOXA 1BLVA 3KS0A 3X33A 2IBJA 1SH4A 2I89A 1BFXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ICC A;  1I87 A;  1EUE A;  1F03 A;  2OZ0 A;  1F04 A;  1FCB A;  4HIL A;  1MNY A;  1M59 A;  3X32 A;  1CYO A;  3X35 A;  4B8N A;  1T0G A;  1EHB A;  1CXY A;  3LF5 A;  3MUS A;  1IEU A;  2I96 A;  1KBI A;  1MJ4 A;  1U9M A;  1X3X A;  4HIN A;  1LDC A;  1I8C A;  1AQA A;  1U9U A;  1LR6 A;  1LTD A;  1IB7 A;  2M33 A;  1I5U A;  1NX7 A;  2KEO A;  3OZZ B;  1AXX A;  4X8Y A;  1LQX A;  1AW3 A;  1M20 A;  1B5B A;  1M2M A;  3NER A;  1IET A;  3X34 A;  1LJ0 A;  1B5A A;  1JEX A;  1AWP A;  1ES1 A;  1B5M A;  1LCO A;  1J03 A;  1DO9 A;  2AXX A;  1HKO A;  1J0Q A;  1M2I A;  1SOX A;  1BLV A;  3KS0 A;  3X33 A;  2IBJ A;  1SH4 A;  2I89 A;  1BFX A; 
#chains in the Genus database with same CATH topology
 1ICC A;  1I87 A;  1EUE A;  1F03 A;  2OZ0 A;  1F04 A;  1FCB A;  4HIL A;  1MNY A;  1M59 A;  3X32 A;  1CYO A;  3X35 A;  4B8N A;  1T0G A;  1EHB A;  1CXY A;  3LF5 A;  3MUS A;  1IEU A;  2I96 A;  1KBI A;  1MJ4 A;  1U9M A;  1X3X A;  4HIN A;  1LDC A;  1I8C A;  1AQA A;  1U9U A;  1LR6 A;  1LTD A;  1IB7 A;  2M33 A;  1I5U A;  1NX7 A;  2KEO A;  3OZZ B;  1AXX A;  4X8Y A;  1LQX A;  1AW3 A;  1M20 A;  1B5B A;  1M2M A;  3NER A;  1IET A;  3X34 A;  1LJ0 A;  1B5A A;  1JEX A;  1AWP A;  1ES1 A;  1B5M A;  1LCO A;  1J03 A;  1DO9 A;  2AXX A;  1HKO A;  1J0Q A;  1M2I A;  1SOX A;  1BLV A;  3KS0 A;  3X33 A;  2IBJ A;  1SH4 A;  2I89 A;  1BFX A; 
#chains in the Genus database with same CATH homology
 1ICC A;  1I87 A;  1EUE A;  1F03 A;  2OZ0 A;  1F04 A;  1FCB A;  4HIL A;  1MNY A;  1M59 A;  3X32 A;  1CYO A;  3X35 A;  4B8N A;  1T0G A;  1EHB A;  1CXY A;  3LF5 A;  3MUS A;  1IEU A;  2I96 A;  1KBI A;  1MJ4 A;  1U9M A;  1X3X A;  4HIN A;  1LDC A;  1I8C A;  1AQA A;  1U9U A;  1LR6 A;  1LTD A;  1IB7 A;  2M33 A;  1I5U A;  1NX7 A;  2KEO A;  3OZZ B;  1AXX A;  4X8Y A;  1LQX A;  1AW3 A;  1M20 A;  1B5B A;  1M2M A;  3NER A;  1IET A;  3X34 A;  1LJ0 A;  1B5A A;  1JEX A;  1AWP A;  1ES1 A;  1B5M A;  1LCO A;  1J03 A;  1DO9 A;  2AXX A;  1HKO A;  1J0Q A;  1M2I A;  1SOX A;  1BLV A;  3KS0 A;  3X33 A;  2IBJ A;  1SH4 A;  2I89 A;  1BFX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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