1AXCA

Human pcna
Total Genus 57

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
255
structure length
249
Chain Sequence
MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTVIII4 (62-65)TI5 (93-96)S1 (2-6)TVIII3 (57-60)AH1 (9-20)TII2 (241-244)AH4 (209-215)TI1 (20-23)S2 (25-31)S5 (59-62)3H1 (54-56)TI2 (31-34)S3 (34-40)S4 (46-53)TI3 (41-44)S15 (203-208)S18 (245-251)S6 (66-71)S9 (111-117)AH2 (72-81)TI4 (83-86)S8 (98-104)TIV1 (105-110)S11 (157-163)TVIII5 (133-136)TI7 (191-194)TVIII6 (199-202)TI6 (163-166)S13 (176-183)S12 (166-173)TIV2 (173-176)3H2 (216-221)TII1 (230-233)S16 (224-229)S17 (235-241)S10 (135-140)AH3 (141-153)S14 (196-199)S7 (87-92)Updating...
connected with : NaN
molecule tags Complex (dna-binding protein/dna)
publication title Structure of the C-terminal region of p21(WAF1/CIP1) complexed with human PCNA.
pubmed doi rcsb
molecule keywords PCNA
total genus 57
structure length 249
sequence length 255
chains with identical sequence C, E
ec nomenclature
pdb deposition date 1997-10-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 1axcA00
5IY4A 2HIIA 3P87A 3P91A 5B7OA 2HIIB 1UD9A 2ZVLA 1RWZA 3HSLX 3V62B 2AVTA 4YHRA 2HIKC 2IJXA 1YYPA 1DMLA 1IZ4A 4CS5A 1IZ5A 1U7BA 2ZVWA 3G65C 4D2GA 3GPMA 2ZVVA 1U76A 3GGRC 1UL1A 2IZOC 3A2FB 5AUJA 3A1JB 5JNED 3F1WA 5HACA 5DAIA 2IX2C 4HK1A 1RXMA 3VKXA 1B77A 5E0UA 1ISQA 2ZVKA 3U5ZF 3U61F 3G65B 1VYJA 3AIZC 2AWAA 2NTIA 2OD8A 1B8HA 3P83A 2NTIB 4ZTDA 3A1JA 2HIIC 3K4XA 1T6LA 1AXCA 4TR6A 3GPNA 5E0TA 2IO4A 3I2MX 4L6PA 2HIKA 2IX2B 3FDSC 2IO4B 1RXZA 5IWDA 5H0TA 2HIKB 3FDSD 3G65A 1CZDA 1PLQA 4RJFA 3IFVA 3GGRA 3AIXB 3WGWA 3GGRB 1W60A 5E0VA 1GE8A 3U60F 2IZOB 3V61B 3LX1A 3TBLA 1PLRA 2IX2A 1VYMA 3HI8A 5A6DA 1SXJF 3V60B 3AIZA 4L60A 2NTIC 5IXAA 3AIXA 3LX2A 5CFKA 3A1JC 5DA7A 2Z0LA 2ZVMA
chains in the Genus database with same CATH superfamily
5IY4A 2HIIA 3P87A 3P91A 5B7OA 2HIIB 1UD9A 2ZVLA 1RWZA 3HSLX 3V62B 2AVTA 4YHRA 2HIKC 2IJXA 1YYPA 1DMLA 1IZ4A 4CS5A 1IZ5A 1U7BA 2ZVWA 3G65C 4D2GA 3GPMA 2ZVVA 1U76A 3GGRC 1UL1A 2IZOC 3A2FB 5AUJA 3A1JB 5JNED 3F1WA 5HACA 5DAIA 2IX2C 4HK1A 1RXMA 3VKXA 1B77A 5E0UA 1ISQA 2ZVKA 3U5ZF 3U61F 3G65B 1VYJA 3AIZC 2AWAA 2NTIA 2OD8A 1B8HA 3P83A 2NTIB 4ZTDA 3A1JA 2HIIC 3K4XA 1T6LA 1AXCA 4TR6A 3GPNA 5E0TA 2IO4A 3I2MX 4L6PA 2HIKA 2IX2B 3FDSC 2IO4B 1RXZA 5IWDA 5H0TA 2HIKB 3FDSD 3G65A 1CZDA 1PLQA 4RJFA 3IFVA 3GGRA 3AIXB 3WGWA 3GGRB 1W60A 5E0VA 1GE8A 3U60F 2IZOB 3V61B 3LX1A 3TBLA 1PLRA 2IX2A 1VYMA 3HI8A 5A6DA 1SXJF 3V60B 3AIZA 4L60A 2NTIC 5IXAA 3AIXA 3LX2A 5CFKA 3A1JC 5DA7A 2Z0LA 2ZVMA
chains in the Genus database with same CATH topology
5IY4A 2HIIA 3P87A 3P91A 5B7OA 2HIIB 1UD9A 2ZVLA 1RWZA 3HSLX 3V62B 2AVTA 4YHRA 2HIKC 2IJXA 1YYPA 1DMLA 1IZ4A 4CS5A 1IZ5A 1U7BA 2ZVWA 3G65C 4D2GA 3GPMA 2ZVVA 1U76A 3GGRC 1UL1A 2IZOC 3A2FB 5AUJA 3A1JB 5JNED 3F1WA 5HACA 5DAIA 2IX2C 4HK1A 1RXMA 3VKXA 1B77A 5E0UA 1ISQA 2ZVKA 3U5ZF 3U61F 3G65B 1VYJA 3AIZC 2AWAA 2NTIA 2OD8A 1B8HA 3P83A 2NTIB 4ZTDA 3A1JA 2HIIC 3K4XA 1T6LA 1AXCA 4TR6A 3GPNA 5E0TA 2IO4A 3I2MX 4L6PA 2HIKA 2IX2B 3FDSC 2IO4B 1RXZA 5IWDA 5H0TA 2HIKB 3FDSD 3G65A 1CZDA 1PLQA 4RJFA 3IFVA 3GGRA 3AIXB 3WGWA 3GGRB 1W60A 5E0VA 1GE8A 3U60F 2IZOB 3V61B 3LX1A 3TBLA 1PLRA 2IX2A 1VYMA 3HI8A 5A6DA 1SXJF 3V60B 3AIZA 4L60A 2NTIC 5IXAA 3AIXA 3LX2A 5CFKA 3A1JC 5DA7A 2Z0LA 2ZVMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IY4 A;  2HII A;  3P87 A;  3P91 A;  5B7O A;  2HII B;  1UD9 A;  2ZVL A;  1RWZ A;  3HSL X;  3V62 B;  2AVT A;  4YHR A;  2HIK C;  2IJX A;  1YYP A;  1DML A;  1IZ4 A;  4CS5 A;  1IZ5 A;  1U7B A;  2ZVW A;  3G65 C;  4D2G A;  3GPM A;  2ZVV A;  1U76 A;  3GGR C;  1UL1 A;  2IZO C;  3A2F B;  5AUJ A;  3A1J B;  5JNE D;  3F1W A;  5HAC A;  5DAI A;  2IX2 C;  4HK1 A;  1RXM A;  3VKX A;  1B77 A;  5E0U A;  1ISQ A;  2ZVK A;  3U5Z F;  3U61 F;  3G65 B;  1VYJ A;  3AIZ C;  2AWA A;  2NTI A;  2OD8 A;  1B8H A;  3P83 A;  2NTI B;  4ZTD A;  3A1J A;  2HII C;  3K4X A;  1T6L A;  1AXC A;  4TR6 A;  3GPN A;  5E0T A;  2IO4 A;  3I2M X;  4L6P A;  2HIK A;  2IX2 B;  3FDS C;  2IO4 B;  1RXZ A;  5IWD A;  5H0T A;  2HIK B;  3FDS D;  3G65 A;  1CZD A;  1PLQ A;  4RJF A;  3IFV A;  3GGR A;  3AIX B;  3WGW A;  3GGR B;  1W60 A;  5E0V A;  1GE8 A;  3U60 F;  2IZO B;  3V61 B;  3LX1 A;  3TBL A;  1PLR A;  2IX2 A;  1VYM A;  3HI8 A;  5A6D A;  1SXJ F;  3V60 B;  3AIZ A;  4L60 A;  2NTI C;  5IXA A;  3AIX A;  3LX2 A;  5CFK A;  3A1J C;  5DA7 A;  2Z0L A;  2ZVM A; 
#chains in the Genus database with same CATH topology
 5IY4 A;  2HII A;  3P87 A;  3P91 A;  5B7O A;  2HII B;  1UD9 A;  2ZVL A;  1RWZ A;  3HSL X;  3V62 B;  2AVT A;  4YHR A;  2HIK C;  2IJX A;  1YYP A;  1DML A;  1IZ4 A;  4CS5 A;  1IZ5 A;  1U7B A;  2ZVW A;  3G65 C;  4D2G A;  3GPM A;  2ZVV A;  1U76 A;  3GGR C;  1UL1 A;  2IZO C;  3A2F B;  5AUJ A;  3A1J B;  5JNE D;  3F1W A;  5HAC A;  5DAI A;  2IX2 C;  4HK1 A;  1RXM A;  3VKX A;  1B77 A;  5E0U A;  1ISQ A;  2ZVK A;  3U5Z F;  3U61 F;  3G65 B;  1VYJ A;  3AIZ C;  2AWA A;  2NTI A;  2OD8 A;  1B8H A;  3P83 A;  2NTI B;  4ZTD A;  3A1J A;  2HII C;  3K4X A;  1T6L A;  1AXC A;  4TR6 A;  3GPN A;  5E0T A;  2IO4 A;  3I2M X;  4L6P A;  2HIK A;  2IX2 B;  3FDS C;  2IO4 B;  1RXZ A;  5IWD A;  5H0T A;  2HIK B;  3FDS D;  3G65 A;  1CZD A;  1PLQ A;  4RJF A;  3IFV A;  3GGR A;  3AIX B;  3WGW A;  3GGR B;  1W60 A;  5E0V A;  1GE8 A;  3U60 F;  2IZO B;  3V61 B;  3LX1 A;  3TBL A;  1PLR A;  2IX2 A;  1VYM A;  3HI8 A;  5A6D A;  1SXJ F;  3V60 B;  3AIZ A;  4L60 A;  2NTI C;  5IXA A;  3AIX A;  3LX2 A;  5CFK A;  3A1J C;  5DA7 A;  2Z0L A;  2ZVM A; 
#chains in the Genus database with same CATH homology
 5IY4 A;  2HII A;  3P87 A;  3P91 A;  5B7O A;  2HII B;  1UD9 A;  2ZVL A;  1RWZ A;  3HSL X;  3V62 B;  2AVT A;  4YHR A;  2HIK C;  2IJX A;  1YYP A;  1DML A;  1IZ4 A;  4CS5 A;  1IZ5 A;  1U7B A;  2ZVW A;  3G65 C;  4D2G A;  3GPM A;  2ZVV A;  1U76 A;  3GGR C;  1UL1 A;  2IZO C;  3A2F B;  5AUJ A;  3A1J B;  5JNE D;  3F1W A;  5HAC A;  5DAI A;  2IX2 C;  4HK1 A;  1RXM A;  3VKX A;  1B77 A;  5E0U A;  1ISQ A;  2ZVK A;  3U5Z F;  3U61 F;  3G65 B;  1VYJ A;  3AIZ C;  2AWA A;  2NTI A;  2OD8 A;  1B8H A;  3P83 A;  2NTI B;  4ZTD A;  3A1J A;  2HII C;  3K4X A;  1T6L A;  1AXC A;  4TR6 A;  3GPN A;  5E0T A;  2IO4 A;  3I2M X;  4L6P A;  2HIK A;  2IX2 B;  3FDS C;  2IO4 B;  1RXZ A;  5IWD A;  5H0T A;  2HIK B;  3FDS D;  3G65 A;  1CZD A;  1PLQ A;  4RJF A;  3IFV A;  3GGR A;  3AIX B;  3WGW A;  3GGR B;  1W60 A;  5E0V A;  1GE8 A;  3U60 F;  2IZO B;  3V61 B;  3LX1 A;  3TBL A;  1PLR A;  2IX2 A;  1VYM A;  3HI8 A;  5A6D A;  1SXJ F;  3V60 B;  3AIZ A;  4L60 A;  2NTI C;  5IXA A;  3AIX A;  3LX2 A;  5CFK A;  3A1J C;  5DA7 A;  2Z0L A;  2ZVM A; 
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