4CS5A

Crystal structure of pcna from litopenaeus vannamei
Total Genus 52
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
255
structure length
255
Chain Sequence
MFEARLVQGSLLKKVLEAIKDLLNEASWDCADSGIQLQAMDNSHVSLVSLNLRAKGFDKYRCDRNLIMGMNLTSMSKILKCAANDDIITMKAQDNADTVTFMFESPNQEKVSDYEMKLMNLDQEHLGIPETDYACVIKLPSGEFARICRDLSQFGESIVIACTKEGVKFSAAGDIGTANIKLAQTSSVDKEEEAVVIEMQEPVTLTFACRYLNMFTKATPLSPQVSLSMSPDVPLVVEYAIGEIGHIRYFLAPKI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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molecule tags Nuclear protein
source organism Litopenaeus vannamei
publication title Crystal Structure of the Shrimp Proliferating Cell Nuclear Antigen: Structural Complementarity with Wssv DNA Polymerase Pip-Box.
pubmed doi rcsb
molecule keywords PROLIFERATING CELL NUCLEAR ANTIGEN
total genus 52
structure length 255
sequence length 255
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2014-03-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 4cs5A00
5B7OA 5IXAA 4TR6A 3WGWA 1VYMA 2IO4B 3AIXA 2AWAA 2HIIB 3HI8A 2HIKA 3G65A 3VKXA 1RXMA 3GPMA 3GGRB 1PLRA 1B8HA 1IZ5A 3P91A 2IX2C 1U76A 2IZOC 4L60A 1SXJF 1CZDA 4HK1A 2IO4A 2OD8A 4ZTDA 5E0VA 2HIIA 3GGRA 4YHRA 3A1JB 5DAIA 5JNED 3TBLA 2AVTA 1YYPA 3GPNA 3P83A 2HIKC 3HSLX 3G65C 3A2FB 3I2MX 3A1JA 3K4XA 5AUJA 2ZVWA 3LX2A 1AXCA 1DMLA 1PLQA 1IZ4A 5DA7A 2IX2B 1RWZA 1B77A 3GGRC 3V62B 2ZVMA 3AIZA 1UL1A 3U61F 2Z0LA 2NTIB 5IY4A 3F1WA 5CFKA 2IX2A 1U7BA 2ZVKA 1T6LA 3AIXB 3A1JC 5E0UA 3FDSD 3V61B 3FDSC 3G65B 5E0TA 5IWDA 2IJXA 2ZVLA 5H0TA 2NTIA 2HIIC 2IZOB 1ISQA 1RXZA 4L6PA 4D2GA 3U5ZF 3P87A 3AIZC 5HACA 1GE8A 3V60B 1UD9A 5A6DA 3LX1A 1VYJA 2ZVVA 2HIKB 4CS5A 2NTIC 1W60A 4RJFA 3U60F 3IFVA
chains in the Genus database with same CATH superfamily
5B7OA 5IXAA 4TR6A 3WGWA 1VYMA 2IO4B 3AIXA 2AWAA 2HIIB 3HI8A 2HIKA 3G65A 3VKXA 1RXMA 3GPMA 3GGRB 1PLRA 1B8HA 1IZ5A 3P91A 2IX2C 1U76A 2IZOC 4L60A 1SXJF 1CZDA 4HK1A 2IO4A 2OD8A 4ZTDA 5E0VA 2HIIA 3GGRA 4YHRA 3A1JB 5DAIA 5JNED 3TBLA 2AVTA 1YYPA 3GPNA 3P83A 2HIKC 3HSLX 3G65C 3A2FB 3I2MX 3A1JA 3K4XA 5AUJA 2ZVWA 3LX2A 1AXCA 1DMLA 1PLQA 1IZ4A 5DA7A 2IX2B 1RWZA 1B77A 3GGRC 3V62B 2ZVMA 3AIZA 1UL1A 3U61F 2Z0LA 2NTIB 5IY4A 3F1WA 5CFKA 2IX2A 1U7BA 2ZVKA 1T6LA 3AIXB 3A1JC 5E0UA 3FDSD 3V61B 3FDSC 3G65B 5E0TA 5IWDA 2IJXA 2ZVLA 5H0TA 2NTIA 2HIIC 2IZOB 1ISQA 1RXZA 4L6PA 4D2GA 3U5ZF 3P87A 3AIZC 5HACA 1GE8A 3V60B 1UD9A 5A6DA 3LX1A 1VYJA 2ZVVA 2HIKB 4CS5A 2NTIC 1W60A 4RJFA 3U60F 3IFVA
chains in the Genus database with same CATH topology
5B7OA 5IXAA 4TR6A 3WGWA 1VYMA 2IO4B 3AIXA 2AWAA 2HIIB 3HI8A 2HIKA 3G65A 3VKXA 1RXMA 3GPMA 3GGRB 1PLRA 1B8HA 1IZ5A 3P91A 2IX2C 1U76A 2IZOC 4L60A 1SXJF 1CZDA 4HK1A 2IO4A 2OD8A 4ZTDA 5E0VA 2HIIA 3GGRA 4YHRA 3A1JB 5DAIA 5JNED 3TBLA 2AVTA 1YYPA 3GPNA 3P83A 2HIKC 3HSLX 3G65C 3A2FB 3I2MX 3A1JA 3K4XA 5AUJA 2ZVWA 3LX2A 1AXCA 1DMLA 1PLQA 1IZ4A 5DA7A 2IX2B 1RWZA 1B77A 3GGRC 3V62B 2ZVMA 3AIZA 1UL1A 3U61F 2Z0LA 2NTIB 5IY4A 3F1WA 5CFKA 2IX2A 1U7BA 2ZVKA 1T6LA 3AIXB 3A1JC 5E0UA 3FDSD 3V61B 3FDSC 3G65B 5E0TA 5IWDA 2IJXA 2ZVLA 5H0TA 2NTIA 2HIIC 2IZOB 1ISQA 1RXZA 4L6PA 4D2GA 3U5ZF 3P87A 3AIZC 5HACA 1GE8A 3V60B 1UD9A 5A6DA 3LX1A 1VYJA 2ZVVA 2HIKB 4CS5A 2NTIC 1W60A 4RJFA 3U60F 3IFVA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 5B7O A;  5IXA A;  4TR6 A;  3WGW A;  1VYM A;  2IO4 B;  3AIX A;  2AWA A;  2HII B;  3HI8 A;  2HIK A;  3G65 A;  3VKX A;  1RXM A;  3GPM A;  3GGR B;  1PLR A;  1B8H A;  1IZ5 A;  3P91 A;  2IX2 C;  1U76 A;  2IZO C;  4L60 A;  1SXJ F;  1CZD A;  4HK1 A;  2IO4 A;  2OD8 A;  4ZTD A;  5E0V A;  2HII A;  3GGR A;  4YHR A;  3A1J B;  5DAI A;  5JNE D;  3TBL A;  2AVT A;  1YYP A;  3GPN A;  3P83 A;  2HIK C;  3HSL X;  3G65 C;  3A2F B;  3I2M X;  3A1J A;  3K4X A;  5AUJ A;  2ZVW A;  3LX2 A;  1AXC A;  1DML A;  1PLQ A;  1IZ4 A;  5DA7 A;  2IX2 B;  1RWZ A;  1B77 A;  3GGR C;  3V62 B;  2ZVM A;  3AIZ A;  1UL1 A;  3U61 F;  2Z0L A;  2NTI B;  5IY4 A;  3F1W A;  5CFK A;  2IX2 A;  1U7B A;  2ZVK A;  1T6L A;  3AIX B;  3A1J C;  5E0U A;  3FDS D;  3V61 B;  3FDS C;  3G65 B;  5E0T A;  5IWD A;  2IJX A;  2ZVL A;  5H0T A;  2NTI A;  2HII C;  2IZO B;  1ISQ A;  1RXZ A;  4L6P A;  4D2G A;  3U5Z F;  3P87 A;  3AIZ C;  5HAC A;  1GE8 A;  3V60 B;  1UD9 A;  5A6D A;  3LX1 A;  1VYJ A;  2ZVV A;  2HIK B;  4CS5 A;  2NTI C;  1W60 A;  4RJF A;  3U60 F;  3IFV A; 
#chains in the Genus database with same CATH topology
 5B7O A;  5IXA A;  4TR6 A;  3WGW A;  1VYM A;  2IO4 B;  3AIX A;  2AWA A;  2HII B;  3HI8 A;  2HIK A;  3G65 A;  3VKX A;  1RXM A;  3GPM A;  3GGR B;  1PLR A;  1B8H A;  1IZ5 A;  3P91 A;  2IX2 C;  1U76 A;  2IZO C;  4L60 A;  1SXJ F;  1CZD A;  4HK1 A;  2IO4 A;  2OD8 A;  4ZTD A;  5E0V A;  2HII A;  3GGR A;  4YHR A;  3A1J B;  5DAI A;  5JNE D;  3TBL A;  2AVT A;  1YYP A;  3GPN A;  3P83 A;  2HIK C;  3HSL X;  3G65 C;  3A2F B;  3I2M X;  3A1J A;  3K4X A;  5AUJ A;  2ZVW A;  3LX2 A;  1AXC A;  1DML A;  1PLQ A;  1IZ4 A;  5DA7 A;  2IX2 B;  1RWZ A;  1B77 A;  3GGR C;  3V62 B;  2ZVM A;  3AIZ A;  1UL1 A;  3U61 F;  2Z0L A;  2NTI B;  5IY4 A;  3F1W A;  5CFK A;  2IX2 A;  1U7B A;  2ZVK A;  1T6L A;  3AIX B;  3A1J C;  5E0U A;  3FDS D;  3V61 B;  3FDS C;  3G65 B;  5E0T A;  5IWD A;  2IJX A;  2ZVL A;  5H0T A;  2NTI A;  2HII C;  2IZO B;  1ISQ A;  1RXZ A;  4L6P A;  4D2G A;  3U5Z F;  3P87 A;  3AIZ C;  5HAC A;  1GE8 A;  3V60 B;  1UD9 A;  5A6D A;  3LX1 A;  1VYJ A;  2ZVV A;  2HIK B;  4CS5 A;  2NTI C;  1W60 A;  4RJF A;  3U60 F;  3IFV A; 
#chains in the Genus database with same CATH homology
 5B7O A;  5IXA A;  4TR6 A;  3WGW A;  1VYM A;  2IO4 B;  3AIX A;  2AWA A;  2HII B;  3HI8 A;  2HIK A;  3G65 A;  3VKX A;  1RXM A;  3GPM A;  3GGR B;  1PLR A;  1B8H A;  1IZ5 A;  3P91 A;  2IX2 C;  1U76 A;  2IZO C;  4L60 A;  1SXJ F;  1CZD A;  4HK1 A;  2IO4 A;  2OD8 A;  4ZTD A;  5E0V A;  2HII A;  3GGR A;  4YHR A;  3A1J B;  5DAI A;  5JNE D;  3TBL A;  2AVT A;  1YYP A;  3GPN A;  3P83 A;  2HIK C;  3HSL X;  3G65 C;  3A2F B;  3I2M X;  3A1J A;  3K4X A;  5AUJ A;  2ZVW A;  3LX2 A;  1AXC A;  1DML A;  1PLQ A;  1IZ4 A;  5DA7 A;  2IX2 B;  1RWZ A;  1B77 A;  3GGR C;  3V62 B;  2ZVM A;  3AIZ A;  1UL1 A;  3U61 F;  2Z0L A;  2NTI B;  5IY4 A;  3F1W A;  5CFK A;  2IX2 A;  1U7B A;  2ZVK A;  1T6L A;  3AIX B;  3A1J C;  5E0U A;  3FDS D;  3V61 B;  3FDS C;  3G65 B;  5E0T A;  5IWD A;  2IJX A;  2ZVL A;  5H0T A;  2NTI A;  2HII C;  2IZO B;  1ISQ A;  1RXZ A;  4L6P A;  4D2G A;  3U5Z F;  3P87 A;  3AIZ C;  5HAC A;  1GE8 A;  3V60 B;  1UD9 A;  5A6D A;  3LX1 A;  1VYJ A;  2ZVV A;  2HIK B;  4CS5 A;  2NTI C;  1W60 A;  4RJF A;  3U60 F;  3IFV A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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