1B8HA

Sliding clamp, dna polymerase
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
228
structure length
228
Chain Sequence
MKLSKDTIAILKNFASINSGILLSQGKFIMTRAVNGTTYAEANISDEIDFDVALYDLNSFLSILSLVSDDAEISMHTDGNIKIADTRSTVYWPAADKSTIVFPNKPIQFPVASVITEIKAEDLQQLLRVSRGLQIDTIAITNKDGKIVINGYNKVEDSGLTRPKYSLTLTDYDGSNNFNFVINMANMKIQPGNYKVMLWGAGDKVAAKFESSQVSYVIAMEADSTHDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Enterobacteria phage rb69
publication title Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex.
pubmed doi rcsb
molecule keywords DNA POLYMERASE PROCESSIVITY COMPONENT
total genus 56
structure length 228
sequence length 228
chains with identical sequence B, C
ec nomenclature
pdb deposition date 1999-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02916 DNA_PPF DNA polymerase processivity factor
A PF09116 gp45-slide_C gp45 sliding clamp, C terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 1b8hA00
5CFKA 2AVTA 2ZVWA 5H0TA 2HIIA 5IY4A 2IO4B 3P87A 5JNED 3GPMA 3HSLX 2ZVMA 1B8HA 5E0UA 4D2GA 1PLQA 3U60F 2ZVLA 4RJFA 1YYPA 2IX2C 2IO4A 1ISQA 3GGRC 3A1JC 5E0TA 5HACA 2HIKC 2AWAA 1RXMA 3LX2A 3AIZA 2HIIB 2ZVKA 1DMLA 5E0VA 3I2MX 3P83A 2Z0LA 2NTIB 1RXZA 3V60B 3V62B 4HK1A 3AIXB 3WGWA 3TBLA 4ZTDA 2IZOB 1SXJF 2NTIA 3G65B 4CS5A 2OD8A 3AIXA 4YHRA 3U61F 3U5ZF 1PLRA 2IZOC 1GE8A 3IFVA 3FDSD 3G65A 1B77A 1CZDA 1U7BA 1IZ5A 3P91A 2HIIC 1AXCA 1UD9A 4L6PA 3K4XA 3GGRA 3A1JA 2HIKA 2NTIC 2ZVVA 4TR6A 5AUJA 4L60A 1UL1A 5IXAA 3AIZC 3GPNA 3G65C 2IX2B 2IJXA 3GGRB 3A1JB 1VYMA 1VYJA 2HIKB 5B7OA 5DAIA 1W60A 2IX2A 1IZ4A 3FDSC 3LX1A 1U76A 3V61B 3A2FB 5A6DA 5IWDA 3HI8A 1RWZA 3VKXA 1T6LA 3F1WA 5DA7A
chains in the Genus database with same CATH superfamily
5CFKA 2AVTA 2ZVWA 5H0TA 2HIIA 5IY4A 2IO4B 3P87A 5JNED 3GPMA 3HSLX 2ZVMA 1B8HA 5E0UA 4D2GA 1PLQA 3U60F 2ZVLA 4RJFA 1YYPA 2IX2C 2IO4A 1ISQA 3GGRC 3A1JC 5E0TA 5HACA 2HIKC 2AWAA 1RXMA 3LX2A 3AIZA 2HIIB 2ZVKA 1DMLA 5E0VA 3I2MX 3P83A 2Z0LA 2NTIB 1RXZA 3V60B 3V62B 4HK1A 3AIXB 3WGWA 3TBLA 4ZTDA 2IZOB 1SXJF 2NTIA 3G65B 4CS5A 2OD8A 3AIXA 4YHRA 3U61F 3U5ZF 1PLRA 2IZOC 1GE8A 3IFVA 3FDSD 3G65A 1B77A 1CZDA 1U7BA 1IZ5A 3P91A 2HIIC 1AXCA 1UD9A 4L6PA 3K4XA 3GGRA 3A1JA 2HIKA 2NTIC 2ZVVA 4TR6A 5AUJA 4L60A 1UL1A 5IXAA 3AIZC 3GPNA 3G65C 2IX2B 2IJXA 3GGRB 3A1JB 1VYMA 1VYJA 2HIKB 5B7OA 5DAIA 1W60A 2IX2A 1IZ4A 3FDSC 3LX1A 1U76A 3V61B 3A2FB 5A6DA 5IWDA 3HI8A 1RWZA 3VKXA 1T6LA 3F1WA 5DA7A
chains in the Genus database with same CATH topology
5CFKA 2AVTA 2ZVWA 5H0TA 2HIIA 5IY4A 2IO4B 3P87A 5JNED 3GPMA 3HSLX 2ZVMA 1B8HA 5E0UA 4D2GA 1PLQA 3U60F 2ZVLA 4RJFA 1YYPA 2IX2C 2IO4A 1ISQA 3GGRC 3A1JC 5E0TA 5HACA 2HIKC 2AWAA 1RXMA 3LX2A 3AIZA 2HIIB 2ZVKA 1DMLA 5E0VA 3I2MX 3P83A 2Z0LA 2NTIB 1RXZA 3V60B 3V62B 4HK1A 3AIXB 3WGWA 3TBLA 4ZTDA 2IZOB 1SXJF 2NTIA 3G65B 4CS5A 2OD8A 3AIXA 4YHRA 3U61F 3U5ZF 1PLRA 2IZOC 1GE8A 3IFVA 3FDSD 3G65A 1B77A 1CZDA 1U7BA 1IZ5A 3P91A 2HIIC 1AXCA 1UD9A 4L6PA 3K4XA 3GGRA 3A1JA 2HIKA 2NTIC 2ZVVA 4TR6A 5AUJA 4L60A 1UL1A 5IXAA 3AIZC 3GPNA 3G65C 2IX2B 2IJXA 3GGRB 3A1JB 1VYMA 1VYJA 2HIKB 5B7OA 5DAIA 1W60A 2IX2A 1IZ4A 3FDSC 3LX1A 1U76A 3V61B 3A2FB 5A6DA 5IWDA 3HI8A 1RWZA 3VKXA 1T6LA 3F1WA 5DA7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5CFK A;  2AVT A;  2ZVW A;  5H0T A;  2HII A;  5IY4 A;  2IO4 B;  3P87 A;  5JNE D;  3GPM A;  3HSL X;  2ZVM A;  1B8H A;  5E0U A;  4D2G A;  1PLQ A;  3U60 F;  2ZVL A;  4RJF A;  1YYP A;  2IX2 C;  2IO4 A;  1ISQ A;  3GGR C;  3A1J C;  5E0T A;  5HAC A;  2HIK C;  2AWA A;  1RXM A;  3LX2 A;  3AIZ A;  2HII B;  2ZVK A;  1DML A;  5E0V A;  3I2M X;  3P83 A;  2Z0L A;  2NTI B;  1RXZ A;  3V60 B;  3V62 B;  4HK1 A;  3AIX B;  3WGW A;  3TBL A;  4ZTD A;  2IZO B;  1SXJ F;  2NTI A;  3G65 B;  4CS5 A;  2OD8 A;  3AIX A;  4YHR A;  3U61 F;  3U5Z F;  1PLR A;  2IZO C;  1GE8 A;  3IFV A;  3FDS D;  3G65 A;  1B77 A;  1CZD A;  1U7B A;  1IZ5 A;  3P91 A;  2HII C;  1AXC A;  1UD9 A;  4L6P A;  3K4X A;  3GGR A;  3A1J A;  2HIK A;  2NTI C;  2ZVV A;  4TR6 A;  5AUJ A;  4L60 A;  1UL1 A;  5IXA A;  3AIZ C;  3GPN A;  3G65 C;  2IX2 B;  2IJX A;  3GGR B;  3A1J B;  1VYM A;  1VYJ A;  2HIK B;  5B7O A;  5DAI A;  1W60 A;  2IX2 A;  1IZ4 A;  3FDS C;  3LX1 A;  1U76 A;  3V61 B;  3A2F B;  5A6D A;  5IWD A;  3HI8 A;  1RWZ A;  3VKX A;  1T6L A;  3F1W A;  5DA7 A; 
#chains in the Genus database with same CATH topology
 5CFK A;  2AVT A;  2ZVW A;  5H0T A;  2HII A;  5IY4 A;  2IO4 B;  3P87 A;  5JNE D;  3GPM A;  3HSL X;  2ZVM A;  1B8H A;  5E0U A;  4D2G A;  1PLQ A;  3U60 F;  2ZVL A;  4RJF A;  1YYP A;  2IX2 C;  2IO4 A;  1ISQ A;  3GGR C;  3A1J C;  5E0T A;  5HAC A;  2HIK C;  2AWA A;  1RXM A;  3LX2 A;  3AIZ A;  2HII B;  2ZVK A;  1DML A;  5E0V A;  3I2M X;  3P83 A;  2Z0L A;  2NTI B;  1RXZ A;  3V60 B;  3V62 B;  4HK1 A;  3AIX B;  3WGW A;  3TBL A;  4ZTD A;  2IZO B;  1SXJ F;  2NTI A;  3G65 B;  4CS5 A;  2OD8 A;  3AIX A;  4YHR A;  3U61 F;  3U5Z F;  1PLR A;  2IZO C;  1GE8 A;  3IFV A;  3FDS D;  3G65 A;  1B77 A;  1CZD A;  1U7B A;  1IZ5 A;  3P91 A;  2HII C;  1AXC A;  1UD9 A;  4L6P A;  3K4X A;  3GGR A;  3A1J A;  2HIK A;  2NTI C;  2ZVV A;  4TR6 A;  5AUJ A;  4L60 A;  1UL1 A;  5IXA A;  3AIZ C;  3GPN A;  3G65 C;  2IX2 B;  2IJX A;  3GGR B;  3A1J B;  1VYM A;  1VYJ A;  2HIK B;  5B7O A;  5DAI A;  1W60 A;  2IX2 A;  1IZ4 A;  3FDS C;  3LX1 A;  1U76 A;  3V61 B;  3A2F B;  5A6D A;  5IWD A;  3HI8 A;  1RWZ A;  3VKX A;  1T6L A;  3F1W A;  5DA7 A; 
#chains in the Genus database with same CATH homology
 5CFK A;  2AVT A;  2ZVW A;  5H0T A;  2HII A;  5IY4 A;  2IO4 B;  3P87 A;  5JNE D;  3GPM A;  3HSL X;  2ZVM A;  1B8H A;  5E0U A;  4D2G A;  1PLQ A;  3U60 F;  2ZVL A;  4RJF A;  1YYP A;  2IX2 C;  2IO4 A;  1ISQ A;  3GGR C;  3A1J C;  5E0T A;  5HAC A;  2HIK C;  2AWA A;  1RXM A;  3LX2 A;  3AIZ A;  2HII B;  2ZVK A;  1DML A;  5E0V A;  3I2M X;  3P83 A;  2Z0L A;  2NTI B;  1RXZ A;  3V60 B;  3V62 B;  4HK1 A;  3AIX B;  3WGW A;  3TBL A;  4ZTD A;  2IZO B;  1SXJ F;  2NTI A;  3G65 B;  4CS5 A;  2OD8 A;  3AIX A;  4YHR A;  3U61 F;  3U5Z F;  1PLR A;  2IZO C;  1GE8 A;  3IFV A;  3FDS D;  3G65 A;  1B77 A;  1CZD A;  1U7B A;  1IZ5 A;  3P91 A;  2HII C;  1AXC A;  1UD9 A;  4L6P A;  3K4X A;  3GGR A;  3A1J A;  2HIK A;  2NTI C;  2ZVV A;  4TR6 A;  5AUJ A;  4L60 A;  1UL1 A;  5IXA A;  3AIZ C;  3GPN A;  3G65 C;  2IX2 B;  2IJX A;  3GGR B;  3A1J B;  1VYM A;  1VYJ A;  2HIK B;  5B7O A;  5DAI A;  1W60 A;  2IX2 A;  1IZ4 A;  3FDS C;  3LX1 A;  1U76 A;  3V61 B;  3A2F B;  5A6D A;  5IWD A;  3HI8 A;  1RWZ A;  3VKX A;  1T6L A;  3F1W A;  5DA7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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