1GE8 | Genus

Total Genus 58

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	58
sequence length	246
structure length	238
Chain Sequence	PFEIVFEGAKEFAQLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLKKILKRGKAKDTLILKKGEENFLEITIQGTATRTFRVPLIDPELPFTAKVVVLGEVLKDAVKDASLVSDSIKFIARENEFIMKAEGETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLTFLLAPRV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 238 atoms

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238 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein
source organism	Pyrococcus furiosus
publication title	Crystal structure of an archaeal DNA sliding clamp: proliferating cell nuclear antigen from Pyrococcus furiosus. pubmed doi rcsb
molecule keywords	PROLIFERATION CELL NUCLEAR ANTIGEN
total genus	58
structure length	238
sequence length	246
ec nomenclature
pdb deposition date	2000-10-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00705	PCNA_N	Proliferating cell nuclear antigen, N-terminal domain
A	PF02747	PCNA_C	Proliferating cell nuclear antigen, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen	Proliferating Cell Nuclear Antigen	1ge8A00

1B8HA 2NTIB 5B7OA 1T6LA 4HK1A 2IZOB 5E0TA 4L60A 4CS5A 1PLQA 1UL1A 3A1JC 3U61F 1U76A 4ZTDA 1UD9A 1RXZA 2HIKA 3WGWA 1W60A 3V60B 2OD8A 5E0UA 3HI8A 1ISQA 3AIZA 1AXCA 3U5ZF 1DMLA 1RXMA 1VYMA 3AIXA 3P83A 1PLRA 1B77A 3K4XA 3GGRC 5DAIA 3FDSD 1U7BA 2IO4B 1IZ5A 5HACA 5JNED 3A1JB 2AWAA 2NTIA 2ZVMA 2IX2C 3P91A 2IX2B 2ZVLA 3FDSC 5A6DA 3A1JA 2AVTA 2HIIC 4YHRA 1SXJF 2ZVKA 2ZVWA 4TR6A 3G65C 3F1WA 3HSLX 3GGRB 5AUJA 3IFVA 4RJFA 5DA7A 5IWDA 2HIKC 2IO4A 2HIKB 3GGRA 2IZOC 3GPMA 3V62B 5E0VA 4L6PA 2ZVVA 3V61B 3AIZC 3TBLA 2HIIB 1GE8A 3VKXA 2Z0LA 1IZ4A 5CFKA 2IX2A 3P87A 3AIXB 3G65B 1CZDA 1YYPA 3A2FB 3LX1A 3LX2A 1RWZA 2HIIA 1VYJA 3GPNA 3I2MX 3U60F 5H0TA 5IXAA 2IJXA 5IY4A 2NTIC 3G65A 4D2GA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1B8H A;  2NTI B;  5B7O A;  1T6L A;  4HK1 A;  2IZO B;  5E0T A;  4L60 A;  4CS5 A;  1PLQ A;  1UL1 A;  3A1J C;  3U61 F;  1U76 A;  4ZTD A;  1UD9 A;  1RXZ A;  2HIK A;  3WGW A;  1W60 A;  3V60 B;  2OD8 A;  5E0U A;  3HI8 A;  1ISQ A;  3AIZ A;  1AXC A;  3U5Z F;  1DML A;  1RXM A;  1VYM A;  3AIX A;  3P83 A;  1PLR A;  1B77 A;  3K4X A;  3GGR C;  5DAI A;  3FDS D;  1U7B A;  2IO4 B;  1IZ5 A;  5HAC A;  5JNE D;  3A1J B;  2AWA A;  2NTI A;  2ZVM A;  2IX2 C;  3P91 A;  2IX2 B;  2ZVL A;  3FDS C;  5A6D A;  3A1J A;  2AVT A;  2HII C;  4YHR A;  1SXJ F;  2ZVK A;  2ZVW A;  4TR6 A;  3G65 C;  3F1W A;  3HSL X;  3GGR B;  5AUJ A;  3IFV A;  4RJF A;  5DA7 A;  5IWD A;  2HIK C;  2IO4 A;  2HIK B;  3GGR A;  2IZO C;  3GPM A;  3V62 B;  5E0V A;  4L6P A;  2ZVV A;  3V61 B;  3AIZ C;  3TBL A;  2HII B;  1GE8 A;  3VKX A;  2Z0L A;  1IZ4 A;  5CFK A;  2IX2 A;  3P87 A;  3AIX B;  3G65 B;  1CZD A;  1YYP A;  3A2F B;  3LX1 A;  3LX2 A;  1RWZ A;  2HII A;  1VYJ A;  3GPN A;  3I2M X;  3U60 F;  5H0T A;  5IXA A;  2IJX A;  5IY4 A;  2NTI C;  3G65 A;  4D2G A; 
#chains in the Genus database with same CATH topology
 1B8H A;  2NTI B;  5B7O A;  1T6L A;  4HK1 A;  2IZO B;  5E0T A;  4L60 A;  4CS5 A;  1PLQ A;  1UL1 A;  3A1J C;  3U61 F;  1U76 A;  4ZTD A;  1UD9 A;  1RXZ A;  2HIK A;  3WGW A;  1W60 A;  3V60 B;  2OD8 A;  5E0U A;  3HI8 A;  1ISQ A;  3AIZ A;  1AXC A;  3U5Z F;  1DML A;  1RXM A;  1VYM A;  3AIX A;  3P83 A;  1PLR A;  1B77 A;  3K4X A;  3GGR C;  5DAI A;  3FDS D;  1U7B A;  2IO4 B;  1IZ5 A;  5HAC A;  5JNE D;  3A1J B;  2AWA A;  2NTI A;  2ZVM A;  2IX2 C;  3P91 A;  2IX2 B;  2ZVL A;  3FDS C;  5A6D A;  3A1J A;  2AVT A;  2HII C;  4YHR A;  1SXJ F;  2ZVK A;  2ZVW A;  4TR6 A;  3G65 C;  3F1W A;  3HSL X;  3GGR B;  5AUJ A;  3IFV A;  4RJF A;  5DA7 A;  5IWD A;  2HIK C;  2IO4 A;  2HIK B;  3GGR A;  2IZO C;  3GPM A;  3V62 B;  5E0V A;  4L6P A;  2ZVV A;  3V61 B;  3AIZ C;  3TBL A;  2HII B;  1GE8 A;  3VKX A;  2Z0L A;  1IZ4 A;  5CFK A;  2IX2 A;  3P87 A;  3AIX B;  3G65 B;  1CZD A;  1YYP A;  3A2F B;  3LX1 A;  3LX2 A;  1RWZ A;  2HII A;  1VYJ A;  3GPN A;  3I2M X;  3U60 F;  5H0T A;  5IXA A;  2IJX A;  5IY4 A;  2NTI C;  3G65 A;  4D2G A; 
#chains in the Genus database with same CATH homology
 1B8H A;  2NTI B;  5B7O A;  1T6L A;  4HK1 A;  2IZO B;  5E0T A;  4L60 A;  4CS5 A;  1PLQ A;  1UL1 A;  3A1J C;  3U61 F;  1U76 A;  4ZTD A;  1UD9 A;  1RXZ A;  2HIK A;  3WGW A;  1W60 A;  3V60 B;  2OD8 A;  5E0U A;  3HI8 A;  1ISQ A;  3AIZ A;  1AXC A;  3U5Z F;  1DML A;  1RXM A;  1VYM A;  3AIX A;  3P83 A;  1PLR A;  1B77 A;  3K4X A;  3GGR C;  5DAI A;  3FDS D;  1U7B A;  2IO4 B;  1IZ5 A;  5HAC A;  5JNE D;  3A1J B;  2AWA A;  2NTI A;  2ZVM A;  2IX2 C;  3P91 A;  2IX2 B;  2ZVL A;  3FDS C;  5A6D A;  3A1J A;  2AVT A;  2HII C;  4YHR A;  1SXJ F;  2ZVK A;  2ZVW A;  4TR6 A;  3G65 C;  3F1W A;  3HSL X;  3GGR B;  5AUJ A;  3IFV A;  4RJF A;  5DA7 A;  5IWD A;  2HIK C;  2IO4 A;  2HIK B;  3GGR A;  2IZO C;  3GPM A;  3V62 B;  5E0V A;  4L6P A;  2ZVV A;  3V61 B;  3AIZ C;  3TBL A;  2HII B;  1GE8 A;  3VKX A;  2Z0L A;  1IZ4 A;  5CFK A;  2IX2 A;  3P87 A;  3AIX B;  3G65 B;  1CZD A;  1YYP A;  3A2F B;  3LX1 A;  3LX2 A;  1RWZ A;  2HII A;  1VYJ A;  3GPN A;  3I2M X;  3U60 F;  5H0T A;  5IXA A;  2IJX A;  5IY4 A;  2NTI C;  3G65 A;  4D2G A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1GE8A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations