1IZ5 | Genus

Total Genus 60

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	60
sequence length	245
structure length	240
Chain Sequence	PFEIVFEGAKEFAQLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLKKILKRGKAKDTLILKKGEENFLEITIQGTATRTFRVPLIDVEEPELPFTAKVVVLGEVLKAAVKAASLVSDSIKFIARENEFIMKAEGETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLTFLLAPR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 240 atoms

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240 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Dna binding protein
source organism	Pyrococcus furiosus
publication title	Intermolecular ion pairs maintain the toroidal structure of Pyrococcus furiosus PCNA pubmed doi rcsb
molecule keywords	Proliferating cell nuclear antigen
total genus	60
structure length	240
sequence length	245
chains with identical sequence	B
ec nomenclature
pdb deposition date	2002-09-23

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00705	PCNA_N	Proliferating cell nuclear antigen, N-terminal domain
A	PF02747	PCNA_C	Proliferating cell nuclear antigen, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen	Proliferating Cell Nuclear Antigen	1iz5A00

1B77A 3VKXA 2AWAA 2NTIB 1RXMA 5AUJA 2IO4A 3A1JB 3GGRB 5B7OA 1PLRA 3LX2A 3AIZA 4YHRA 3HSLX 1UL1A 5IWDA 5E0TA 1VYJA 1PLQA 5DAIA 1W60A 5E0VA 2IX2C 1RWZA 5IY4A 2IJXA 3G65A 1ISQA 2ZVVA 2HIKC 1SXJF 3V61B 3LX1A 2NTIC 1YYPA 3A1JC 3GGRC 4RJFA 3AIXA 2HIIA 3FDSD 3HI8A 3U5ZF 2Z0LA 3U61F 1T6LA 1IZ5A 3WGWA 3A2FB 2IO4B 1U76A 5IXAA 5CFKA 4CS5A 2ZVKA 3V62B 3V60B 3F1WA 3U60F 3IFVA 1GE8A 3P91A 2IZOB 1IZ4A 1DMLA 2IX2A 3FDSC 3G65B 1RXZA 1CZDA 2HIKA 5DA7A 2NTIA 2ZVMA 3P87A 1VYMA 3A1JA 3GGRA 3AIXB 2HIIB 3AIZC 4TR6A 4D2GA 1AXCA 2IZOC 2ZVWA 1U7BA 2OD8A 3G65C 3P83A 2ZVLA 4HK1A 1B8HA 4L6PA 4ZTDA 3I2MX 3GPMA 5A6DA 4L60A 2IX2B 2HIIC 3TBLA 5H0TA 2AVTA 5HACA 3K4XA 5JNED 5E0UA 1UD9A 2HIKB 3GPNA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1B77 A;  3VKX A;  2AWA A;  2NTI B;  1RXM A;  5AUJ A;  2IO4 A;  3A1J B;  3GGR B;  5B7O A;  1PLR A;  3LX2 A;  3AIZ A;  4YHR A;  3HSL X;  1UL1 A;  5IWD A;  5E0T A;  1VYJ A;  1PLQ A;  5DAI A;  1W60 A;  5E0V A;  2IX2 C;  1RWZ A;  5IY4 A;  2IJX A;  3G65 A;  1ISQ A;  2ZVV A;  2HIK C;  1SXJ F;  3V61 B;  3LX1 A;  2NTI C;  1YYP A;  3A1J C;  3GGR C;  4RJF A;  3AIX A;  2HII A;  3FDS D;  3HI8 A;  3U5Z F;  2Z0L A;  3U61 F;  1T6L A;  1IZ5 A;  3WGW A;  3A2F B;  2IO4 B;  1U76 A;  5IXA A;  5CFK A;  4CS5 A;  2ZVK A;  3V62 B;  3V60 B;  3F1W A;  3U60 F;  3IFV A;  1GE8 A;  3P91 A;  2IZO B;  1IZ4 A;  1DML A;  2IX2 A;  3FDS C;  3G65 B;  1RXZ A;  1CZD A;  2HIK A;  5DA7 A;  2NTI A;  2ZVM A;  3P87 A;  1VYM A;  3A1J A;  3GGR A;  3AIX B;  2HII B;  3AIZ C;  4TR6 A;  4D2G A;  1AXC A;  2IZO C;  2ZVW A;  1U7B A;  2OD8 A;  3G65 C;  3P83 A;  2ZVL A;  4HK1 A;  1B8H A;  4L6P A;  4ZTD A;  3I2M X;  3GPM A;  5A6D A;  4L60 A;  2IX2 B;  2HII C;  3TBL A;  5H0T A;  2AVT A;  5HAC A;  3K4X A;  5JNE D;  5E0U A;  1UD9 A;  2HIK B;  3GPN A; 
#chains in the Genus database with same CATH topology
 1B77 A;  3VKX A;  2AWA A;  2NTI B;  1RXM A;  5AUJ A;  2IO4 A;  3A1J B;  3GGR B;  5B7O A;  1PLR A;  3LX2 A;  3AIZ A;  4YHR A;  3HSL X;  1UL1 A;  5IWD A;  5E0T A;  1VYJ A;  1PLQ A;  5DAI A;  1W60 A;  5E0V A;  2IX2 C;  1RWZ A;  5IY4 A;  2IJX A;  3G65 A;  1ISQ A;  2ZVV A;  2HIK C;  1SXJ F;  3V61 B;  3LX1 A;  2NTI C;  1YYP A;  3A1J C;  3GGR C;  4RJF A;  3AIX A;  2HII A;  3FDS D;  3HI8 A;  3U5Z F;  2Z0L A;  3U61 F;  1T6L A;  1IZ5 A;  3WGW A;  3A2F B;  2IO4 B;  1U76 A;  5IXA A;  5CFK A;  4CS5 A;  2ZVK A;  3V62 B;  3V60 B;  3F1W A;  3U60 F;  3IFV A;  1GE8 A;  3P91 A;  2IZO B;  1IZ4 A;  1DML A;  2IX2 A;  3FDS C;  3G65 B;  1RXZ A;  1CZD A;  2HIK A;  5DA7 A;  2NTI A;  2ZVM A;  3P87 A;  1VYM A;  3A1J A;  3GGR A;  3AIX B;  2HII B;  3AIZ C;  4TR6 A;  4D2G A;  1AXC A;  2IZO C;  2ZVW A;  1U7B A;  2OD8 A;  3G65 C;  3P83 A;  2ZVL A;  4HK1 A;  1B8H A;  4L6P A;  4ZTD A;  3I2M X;  3GPM A;  5A6D A;  4L60 A;  2IX2 B;  2HII C;  3TBL A;  5H0T A;  2AVT A;  5HAC A;  3K4X A;  5JNE D;  5E0U A;  1UD9 A;  2HIK B;  3GPN A; 
#chains in the Genus database with same CATH homology
 1B77 A;  3VKX A;  2AWA A;  2NTI B;  1RXM A;  5AUJ A;  2IO4 A;  3A1J B;  3GGR B;  5B7O A;  1PLR A;  3LX2 A;  3AIZ A;  4YHR A;  3HSL X;  1UL1 A;  5IWD A;  5E0T A;  1VYJ A;  1PLQ A;  5DAI A;  1W60 A;  5E0V A;  2IX2 C;  1RWZ A;  5IY4 A;  2IJX A;  3G65 A;  1ISQ A;  2ZVV A;  2HIK C;  1SXJ F;  3V61 B;  3LX1 A;  2NTI C;  1YYP A;  3A1J C;  3GGR C;  4RJF A;  3AIX A;  2HII A;  3FDS D;  3HI8 A;  3U5Z F;  2Z0L A;  3U61 F;  1T6L A;  1IZ5 A;  3WGW A;  3A2F B;  2IO4 B;  1U76 A;  5IXA A;  5CFK A;  4CS5 A;  2ZVK A;  3V62 B;  3V60 B;  3F1W A;  3U60 F;  3IFV A;  1GE8 A;  3P91 A;  2IZO B;  1IZ4 A;  1DML A;  2IX2 A;  3FDS C;  3G65 B;  1RXZ A;  1CZD A;  2HIK A;  5DA7 A;  2NTI A;  2ZVM A;  3P87 A;  1VYM A;  3A1J A;  3GGR A;  3AIX B;  2HII B;  3AIZ C;  4TR6 A;  4D2G A;  1AXC A;  2IZO C;  2ZVW A;  1U7B A;  2OD8 A;  3G65 C;  3P83 A;  2ZVL A;  4HK1 A;  1B8H A;  4L6P A;  4ZTD A;  3I2M X;  3GPM A;  5A6D A;  4L60 A;  2IX2 B;  2HII C;  3TBL A;  5H0T A;  2AVT A;  5HAC A;  3K4X A;  5JNE D;  5E0U A;  1UD9 A;  2HIK B;  3GPN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1IZ5A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations