1JFZA

Crystal structure of mn(ii)-complex of rnase iii endonuclease domain from aquifex aeolicus at 2.10 angstrom resolution
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
148
structure length
148
Chain Sequence
b'GMKMLEQLEKKLGYTFKDKSLLEKALTHVSYSKKEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGR'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords RIBONUCLEASE III
publication title Crystallographic and modeling studies of RNase III suggest a mechanism for double-stranded RNA cleavage.
pubmed doi rcsb
source organism Aquifex aeolicus
molecule tags Hydrolase
total genus 53
structure length 148
sequence length 148
chains with identical sequence B, C, D
ec nomenclature ec 3.1.26.3: Ribonuclease III.
pdb deposition date 2001-06-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00636 Ribonuclease_3 Ribonuclease III domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1520.10 Mainly Alpha Orthogonal Bundle Ribonuclease iii, N-terminal Endonuclease Domain; Chain A Ribonuclease III domain 1jfzA00
1RC7A 1U61A 3N3WA 1I4SA 2NUFA 2NUEA 4M2ZA 1YYWA 3O2RB 2GSLA 1JFZA 3C4TA 4M30A 3RV0A 1RC5A 3O2RA 1YYKA 1YYOA 2FFLA 2QVWA 3C4BA 2NUGA 2EB1A 3RV1A 1O0WA 4OOGC 2EZ6A 4OUNA 2A11A 1YZ9A
chains in the Genus database with same CATH superfamily
1RC7A 1U61A 3N3WA 1I4SA 2NUFA 2NUEA 4M2ZA 1YYWA 3O2RB 2GSLA 1JFZA 3C4TA 4M30A 3RV0A 1RC5A 3O2RA 1YYKA 1YYOA 2FFLA 1ZTDA 2QVWA 3C4BA 2NUGA 2EB1A 3RV1A 1O0WA 4OOGC 2EZ6A 4OUNA 2A11A 1YZ9A
chains in the Genus database with same CATH topology
1RC7A 1U61A 3N3WA 1I4SA 2NUFA 2NUEA 4M2ZA 1YYWA 3O2RB 2GSLA 1JFZA 3C4TA 4M30A 3RV0A 1RC5A 3O2RA 1YYKA 1YYOA 2FFLA 2QVWA 3C4BA 2NUGA 2EB1A 3RV1A 1O0WA 4OOGC 2EZ6A 4OUNA 2A11A 1YZ9A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RC7 A;  1U61 A;  3N3W A;  1I4S A;  2NUF A;  2NUE A;  4M2Z A;  1YYW A;  3O2R B;  2GSL A;  1JFZ A;  3C4T A;  4M30 A;  3RV0 A;  1RC5 A;  3O2R A;  1YYK A;  1YYO A;  2FFL A;  2QVW A;  3C4B A;  2NUG A;  2EB1 A;  3RV1 A;  1O0W A;  4OOG C;  2EZ6 A;  4OUN A;  2A11 A;  1YZ9 A; 
#chains in the Genus database with same CATH topology
 1RC7 A;  1U61 A;  3N3W A;  1I4S A;  2NUF A;  2NUE A;  4M2Z A;  1YYW A;  3O2R B;  2GSL A;  1JFZ A;  3C4T A;  4M30 A;  3RV0 A;  1RC5 A;  3O2R A;  1YYK A;  1YYO A;  2FFL A;  1ZTD A;  2QVW A;  3C4B A;  2NUG A;  2EB1 A;  3RV1 A;  1O0W A;  4OOG C;  2EZ6 A;  4OUN A;  2A11 A;  1YZ9 A; 
#chains in the Genus database with same CATH homology
 1RC7 A;  1U61 A;  3N3W A;  1I4S A;  2NUF A;  2NUE A;  4M2Z A;  1YYW A;  3O2R B;  2GSL A;  1JFZ A;  3C4T A;  4M30 A;  3RV0 A;  1RC5 A;  3O2R A;  1YYK A;  1YYO A;  2FFL A;  2QVW A;  3C4B A;  2NUG A;  2EB1 A;  3RV1 A;  1O0W A;  4OOG C;  2EZ6 A;  4OUN A;  2A11 A;  1YZ9 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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