3O2RA

Structural flexibility in region involved in dimer formation of nuclease domain of ribonuclase iii (rnc) from campylobacter jejuni
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
144
structure length
144
Chain Sequence
b'NIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Ribonuclease III
publication title Structural Flexibility in Region Involved in Dimer Formation of Nuclease Domain of Ribonuclase III (rnc) from Campylobacter jejuni.
rcsb
source organism Campylobacter jejuni subsp. jejuni
molecule tags Hydrolase
total genus 59
structure length 144
sequence length 144
chains with identical sequence C
ec nomenclature ec 3.1.26.3: Ribonuclease III.
pdb deposition date 2010-07-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF14622 Ribonucleas_3_3 Ribonuclease-III-like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1520.10 Mainly Alpha Orthogonal Bundle Ribonuclease iii, N-terminal Endonuclease Domain; Chain A Ribonuclease III domain 3o2rA00
1O0WA 1YZ9A 2EB1A 1RC7A 3RV1A 2FFLA 3C4TA 3O2RA 2EZ6A 2NUEA 1YYOA 1I4SA 4OUNA 2NUFA 4M2ZA 1YYWA 3RV0A 2NUGA 3C4BA 3O2RB 1U61A 4M30A 4OOGC 1JFZA 2A11A 1YYKA 2QVWA 1RC5A 2GSLA 3N3WA
chains in the Genus database with same CATH superfamily
1O0WA 1YZ9A 2EB1A 1RC7A 3RV1A 2FFLA 3C4TA 3O2RA 2EZ6A 2NUEA 1YYOA 1I4SA 4OUNA 2NUFA 4M2ZA 1YYWA 3RV0A 2NUGA 3C4BA 3O2RB 1U61A 4M30A 4OOGC 1JFZA 2A11A 1YYKA 2QVWA 1RC5A 2GSLA 1ZTDA 3N3WA
chains in the Genus database with same CATH topology
1O0WA 1YZ9A 2EB1A 1RC7A 3RV1A 2FFLA 3C4TA 3O2RA 2EZ6A 2NUEA 1YYOA 1I4SA 4OUNA 2NUFA 4M2ZA 1YYWA 3RV0A 2NUGA 3C4BA 3O2RB 1U61A 4M30A 4OOGC 1JFZA 2A11A 1YYKA 2QVWA 1RC5A 2GSLA 3N3WA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O0W A;  1YZ9 A;  2EB1 A;  1RC7 A;  3RV1 A;  2FFL A;  3C4T A;  3O2R A;  2EZ6 A;  2NUE A;  1YYO A;  1I4S A;  4OUN A;  2NUF A;  4M2Z A;  1YYW A;  3RV0 A;  2NUG A;  3C4B A;  3O2R B;  1U61 A;  4M30 A;  4OOG C;  1JFZ A;  2A11 A;  1YYK A;  2QVW A;  1RC5 A;  2GSL A;  3N3W A; 
#chains in the Genus database with same CATH topology
 1O0W A;  1YZ9 A;  2EB1 A;  1RC7 A;  3RV1 A;  2FFL A;  3C4T A;  3O2R A;  2EZ6 A;  2NUE A;  1YYO A;  1I4S A;  4OUN A;  2NUF A;  4M2Z A;  1YYW A;  3RV0 A;  2NUG A;  3C4B A;  3O2R B;  1U61 A;  4M30 A;  4OOG C;  1JFZ A;  2A11 A;  1YYK A;  2QVW A;  1RC5 A;  2GSL A;  1ZTD A;  3N3W A; 
#chains in the Genus database with same CATH homology
 1O0W A;  1YZ9 A;  2EB1 A;  1RC7 A;  3RV1 A;  2FFL A;  3C4T A;  3O2R A;  2EZ6 A;  2NUE A;  1YYO A;  1I4S A;  4OUN A;  2NUF A;  4M2Z A;  1YYW A;  3RV0 A;  2NUG A;  3C4B A;  3O2R B;  1U61 A;  4M30 A;  4OOG C;  1JFZ A;  2A11 A;  1YYK A;  2QVW A;  1RC5 A;  2GSL A;  3N3W A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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