3O2RB

Structural flexibility in region involved in dimer formation of nuclease domain of ribonuclase iii (rnc) from campylobacter jejuni
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
144
structure length
142
Chain Sequence
NIEKLEQSLTYEFKDKNLLIHALTHKSFKSYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENNGGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Ribonuclease III
publication title Structural Flexibility in Region Involved in Dimer Formation of Nuclease Domain of Ribonuclase III (rnc) from Campylobacter jejuni.
rcsb
source organism Campylobacter jejuni subsp. jejuni
total genus 60
structure length 142
sequence length 144
chains with identical sequence D
ec nomenclature ec 3.1.26.3: Ribonuclease III.
pdb deposition date 2010-07-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF14622 Ribonucleas_3_3 Ribonuclease-III-like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1520.10 Mainly Alpha Orthogonal Bundle Ribonuclease iii, N-terminal Endonuclease Domain; Chain A Ribonuclease III domain 3o2rB00
2GSLA 1RC7A 2EB1A 2NUEA 4M2ZA 2A11A 1RC5A 4M30A 4OOGC 2QVWA 1U61A 3O2RB 1O0WA 4OUNA 1I4SA 1YYOA 3N3WA 2EZ6A 3C4TA 3RV1A 1JFZA 1YZ9A 3RV0A 2FFLA 1YYWA 2NUFA 1YYKA 2NUGA 3C4BA 3O2RA
chains in the Genus database with same CATH superfamily
2GSLA 1RC7A 2EB1A 2NUEA 4M2ZA 2A11A 1RC5A 4M30A 4OOGC 2QVWA 1U61A 3O2RB 1O0WA 4OUNA 1I4SA 1YYOA 3N3WA 2EZ6A 1ZTDA 3C4TA 3RV1A 1JFZA 1YZ9A 3RV0A 2FFLA 1YYWA 2NUFA 1YYKA 2NUGA 3C4BA 3O2RA
chains in the Genus database with same CATH topology
2GSLA 1RC7A 2EB1A 2NUEA 4M2ZA 2A11A 1RC5A 4M30A 4OOGC 2QVWA 1U61A 3O2RB 1O0WA 4OUNA 1I4SA 1YYOA 3N3WA 2EZ6A 3C4TA 3RV1A 1JFZA 1YZ9A 3RV0A 2FFLA 1YYWA 2NUFA 1YYKA 2NUGA 3C4BA 3O2RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2GSL A;  1RC7 A;  2EB1 A;  2NUE A;  4M2Z A;  2A11 A;  1RC5 A;  4M30 A;  4OOG C;  2QVW A;  1U61 A;  3O2R B;  1O0W A;  4OUN A;  1I4S A;  1YYO A;  3N3W A;  2EZ6 A;  3C4T A;  3RV1 A;  1JFZ A;  1YZ9 A;  3RV0 A;  2FFL A;  1YYW A;  2NUF A;  1YYK A;  2NUG A;  3C4B A;  3O2R A; 
#chains in the Genus database with same CATH topology
 2GSL A;  1RC7 A;  2EB1 A;  2NUE A;  4M2Z A;  2A11 A;  1RC5 A;  4M30 A;  4OOG C;  2QVW A;  1U61 A;  3O2R B;  1O0W A;  4OUN A;  1I4S A;  1YYO A;  3N3W A;  2EZ6 A;  1ZTD A;  3C4T A;  3RV1 A;  1JFZ A;  1YZ9 A;  3RV0 A;  2FFL A;  1YYW A;  2NUF A;  1YYK A;  2NUG A;  3C4B A;  3O2R A; 
#chains in the Genus database with same CATH homology
 2GSL A;  1RC7 A;  2EB1 A;  2NUE A;  4M2Z A;  2A11 A;  1RC5 A;  4M30 A;  4OOG C;  2QVW A;  1U61 A;  3O2R B;  1O0W A;  4OUN A;  1I4S A;  1YYO A;  3N3W A;  2EZ6 A;  3C4T A;  3RV1 A;  1JFZ A;  1YZ9 A;  3RV0 A;  2FFL A;  1YYW A;  2NUF A;  1YYK A;  2NUG A;  3C4B A;  3O2R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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