1U61A

Crystal structure of putative ribonuclease iii from bacillus cereus
Total Genus 46
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
127
structure length
127
Chain Sequence
IDAKQLNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANSGTVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAIAVLEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein
publication title X-ray crystal structure of conserved hypothetical protein from Bacillus cereus
rcsb
source organism Bacillus cereus
total genus 46
structure length 127
sequence length 127
ec nomenclature
pdb deposition date 2004-07-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00636 Ribonuclease_3 Ribonuclease III domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1520.10 Mainly Alpha Orthogonal Bundle Ribonuclease iii, N-terminal Endonuclease Domain; Chain A Ribonuclease III domain 1u61A00
3O2RA 1I4SA 1YYOA 2NUFA 4M30A 1U61A 2QVWA 1RC7A 3C4BA 4M2ZA 3RV0A 2A11A 3N3WA 2NUGA 1YYWA 2EB1A 1O0WA 1JFZA 1YYKA 3C4TA 3O2RB 2FFLA 1RC5A 2GSLA 1YZ9A 4OOGC 4OUNA 2NUEA 2EZ6A 3RV1A
chains in the Genus database with same CATH superfamily
3O2RA 1I4SA 1YYOA 2NUFA 4M30A 1U61A 2QVWA 1RC7A 3C4BA 4M2ZA 3RV0A 2A11A 3N3WA 2NUGA 1YYWA 2EB1A 1O0WA 1JFZA 1YYKA 3C4TA 1ZTDA 3O2RB 2FFLA 1RC5A 2GSLA 1YZ9A 4OOGC 4OUNA 2NUEA 2EZ6A 3RV1A
chains in the Genus database with same CATH topology
3O2RA 1I4SA 1YYOA 2NUFA 4M30A 1U61A 2QVWA 1RC7A 3C4BA 4M2ZA 3RV0A 2A11A 3N3WA 2NUGA 1YYWA 2EB1A 1O0WA 1JFZA 1YYKA 3C4TA 3O2RB 2FFLA 1RC5A 2GSLA 1YZ9A 4OOGC 4OUNA 2NUEA 2EZ6A 3RV1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3O2R A;  1I4S A;  1YYO A;  2NUF A;  4M30 A;  1U61 A;  2QVW A;  1RC7 A;  3C4B A;  4M2Z A;  3RV0 A;  2A11 A;  3N3W A;  2NUG A;  1YYW A;  2EB1 A;  1O0W A;  1JFZ A;  1YYK A;  3C4T A;  3O2R B;  2FFL A;  1RC5 A;  2GSL A;  1YZ9 A;  4OOG C;  4OUN A;  2NUE A;  2EZ6 A;  3RV1 A; 
#chains in the Genus database with same CATH topology
 3O2R A;  1I4S A;  1YYO A;  2NUF A;  4M30 A;  1U61 A;  2QVW A;  1RC7 A;  3C4B A;  4M2Z A;  3RV0 A;  2A11 A;  3N3W A;  2NUG A;  1YYW A;  2EB1 A;  1O0W A;  1JFZ A;  1YYK A;  3C4T A;  1ZTD A;  3O2R B;  2FFL A;  1RC5 A;  2GSL A;  1YZ9 A;  4OOG C;  4OUN A;  2NUE A;  2EZ6 A;  3RV1 A; 
#chains in the Genus database with same CATH homology
 3O2R A;  1I4S A;  1YYO A;  2NUF A;  4M30 A;  1U61 A;  2QVW A;  1RC7 A;  3C4B A;  4M2Z A;  3RV0 A;  2A11 A;  3N3W A;  2NUG A;  1YYW A;  2EB1 A;  1O0W A;  1JFZ A;  1YYK A;  3C4T A;  3O2R B;  2FFL A;  1RC5 A;  2GSL A;  1YZ9 A;  4OOG C;  4OUN A;  2NUE A;  2EZ6 A;  3RV1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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