1R8DA

Crystal structure of mtan bound to dna
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
109
structure length
109
Chain Sequence
MKYQVKQVAEISGVSIRTLHHYDNIELLNPSALTDAGYRLYSDADLERLQQILFFKEIGFRLDEIKEMLDHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDRTLLSVD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/dna
source organism Bacillus subtilis
publication title The structural mechanism for transcription activation by MerR family member multidrug transporter activation, N terminus.
pubmed doi rcsb
molecule keywords 26-MER
total genus 42
structure length 109
sequence length 109
chains with identical sequence B
ec nomenclature
pdb deposition date 2003-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00376 MerR MerR family regulatory protein
A PF09278 MerR-DNA-bind MerR, DNA binding
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1660.10 Mainly Alpha Orthogonal Bundle Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 1r8dA00
3HH0A 3Q3DA 1Q08A 1Q06A 4J2NA 1Q05A 3D70A 1JBGA 4WLWA 2ZHGA 5D90A 1Q07A 3Q1MA 1EXIA 3D6YA 5I44A 2DG6A 1R8DA 5E01A 1Q09A 1R8EA 3IAOA 3Q5RA 3Q5SA 3GP4A 2VZ4A 5D8CA 5I41B 3QAOA 3D71A 3GPVA 4R24B 2JMLA 1Q0AA 2ZHHA 3Q5PA 3Q2YA 3UCSA 4WLSA 4R4EA 1EXJA 3D6ZA 4R22B
chains in the Genus database with same CATH superfamily
3HH0A 3EZ6A 3Q3DA 1Q08A 1Q06A 4J2NA 1Q05A 3D70A 1JBGA 4WLWA 2ZHGA 5D90A 1Q07A 3Q1MA 1EXIA 2IEFA 3EZ7A 3D6YA 5I44A 4LHFA 2OG0A 2KVVA 2DG6A 1Y6UA 1R8DA 3EZ9A 5E01A 1LX8A 1Q09A 1R8EA 3IAOA 3Q5RA 3Q5SA 3GP4A 3EZ2A 1PM6A 3EZFA 2VZ4A 5D8CA 5I41B 3QAOA 3D71A 1RH6A 3GPVA 4R24B 2JMLA 1Q0AA 2ZHHA 3Q5PA 3Q2YA 3UCSA 4WLSA 4R4EA 4DCZA 1EXJA 3D6ZA 4R22B
chains in the Genus database with same CATH topology
3HH0A 3EZ6A 3Q3DA 1Q08A 1Q06A 4J2NA 1Q05A 3D70A 1JBGA 4WLWA 2ZHGA 5D90A 1Q07A 3Q1MA 1EXIA 2IEFA 3EZ7A 3D6YA 5I44A 4LHFA 2OG0A 2KVVA 2DG6A 1Y6UA 1R8DA 3EZ9A 5E01A 1LX8A 1Q09A 1R8EA 3IAOA 3Q5RA 3Q5SA 3GP4A 3EZ2A 1PM6A 3EZFA 2VZ4A 5D8CA 5I41B 3QAOA 3D71A 1RH6A 3GPVA 4R24B 2JMLA 1Q0AA 2ZHHA 3Q5PA 3Q2YA 3UCSA 4WLSA 4R4EA 4DCZA 1EXJA 3D6ZA 4R22B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HH0 A;  3Q3D A;  1Q08 A;  1Q06 A;  4J2N A;  1Q05 A;  3D70 A;  1JBG A;  4WLW A;  2ZHG A;  5D90 A;  1Q07 A;  3Q1M A;  1EXI A;  3D6Y A;  5I44 A;  2DG6 A;  1R8D A;  5E01 A;  1Q09 A;  1R8E A;  3IAO A;  3Q5R A;  3Q5S A;  3GP4 A;  2VZ4 A;  5D8C A;  5I41 B;  3QAO A;  3D71 A;  3GPV A;  4R24 B;  2JML A;  1Q0A A;  2ZHH A;  3Q5P A;  3Q2Y A;  3UCS A;  4WLS A;  4R4E A;  1EXJ A;  3D6Z A;  4R22 B; 
#chains in the Genus database with same CATH topology
 3HH0 A;  3EZ6 A;  3Q3D A;  1Q08 A;  1Q06 A;  4J2N A;  1Q05 A;  3D70 A;  1JBG A;  4WLW A;  2ZHG A;  5D90 A;  1Q07 A;  3Q1M A;  1EXI A;  2IEF A;  3EZ7 A;  3D6Y A;  5I44 A;  4LHF A;  2OG0 A;  2KVV A;  2DG6 A;  1Y6U A;  1R8D A;  3EZ9 A;  5E01 A;  1LX8 A;  1Q09 A;  1R8E A;  3IAO A;  3Q5R A;  3Q5S A;  3GP4 A;  3EZ2 A;  1PM6 A;  3EZF A;  2VZ4 A;  5D8C A;  5I41 B;  3QAO A;  3D71 A;  1RH6 A;  3GPV A;  4R24 B;  2JML A;  1Q0A A;  2ZHH A;  3Q5P A;  3Q2Y A;  3UCS A;  4WLS A;  4R4E A;  4DCZ A;  1EXJ A;  3D6Z A;  4R22 B; 
#chains in the Genus database with same CATH homology
 3HH0 A;  3EZ6 A;  3Q3D A;  1Q08 A;  1Q06 A;  4J2N A;  1Q05 A;  3D70 A;  1JBG A;  4WLW A;  2ZHG A;  5D90 A;  1Q07 A;  3Q1M A;  1EXI A;  2IEF A;  3EZ7 A;  3D6Y A;  5I44 A;  4LHF A;  2OG0 A;  2KVV A;  2DG6 A;  1Y6U A;  1R8D A;  3EZ9 A;  5E01 A;  1LX8 A;  1Q09 A;  1R8E A;  3IAO A;  3Q5R A;  3Q5S A;  3GP4 A;  3EZ2 A;  1PM6 A;  3EZF A;  2VZ4 A;  5D8C A;  5I41 B;  3QAO A;  3D71 A;  1RH6 A;  3GPV A;  4R24 B;  2JML A;  1Q0A A;  2ZHH A;  3Q5P A;  3Q2Y A;  3UCS A;  4WLS A;  4R4E A;  4DCZ A;  1EXJ A;  3D6Z A;  4R22 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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