1RXMA

C-terminal region of fen-1 bound to a. fulgidus pcna
Total Genus 62

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
62
sequence length
245
structure length
245
Chain Sequence
MIDVIMTGELLKTVTRAIVALVSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDRIFDISKSISTKDLVELIVEDESTLKVKFGSVEYKVALIDPSAIRKEPRIPELELPAKIVMDAGEFKKAIAAADKISDQVIFRSDKEGFRIEAKGDVDSIVFHMTETELIEFNGGEARSMFSVDYLKEFCKVAGSGDLLTIHLGTNYPVRLVFELVGGRAKVEYILAPRIESE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-7)TVIII1 (56-59)AH1 (8-20)AH2 (71-79)S18 (232-238)TIV1 (22-25)S2 (24-30)S5 (58-61)EMPTYTI1 (30-33)3H1 (53-55)S3 (33-39)TI2 (40-43)S4 (45-52)AH4 (195-203)S6 (65-70)TI3 (82-85)TIV2 (91-94)TIV3 (93-96)S10 (129-134)TVIII2 (181-184)TII1 (206-209)AH3 (135-147)TIV4 (149-152)S12 (160-166)S11 (151-157)TI4 (157-160)TI5 (167-170)S15 (189-194)3H4 (228-230)S7 (86-91)S8 (96-101)S14 (183-184)3H3 (178-180)3H2 (113-115)S16 (210-215)S13 (171-176)TIV5 (216-219)S17 (221-227)S9 (104-109)Updating...
connected with : NaN
molecule tags Replication
source organism Archaeoglobus fulgidus
publication title Structural Basis for FEN-1 Substrate Specificity and PCNA-Mediated Activation in DNA Replication and Repair
pubmed doi rcsb
molecule keywords DNA polymerase sliding clamp
total genus 62
structure length 245
sequence length 245
ec nomenclature
pdb deposition date 2003-12-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 1rxmA00
2IX2A 2NTIA 3IFVA 3GPNA 5A6DA 3G65C 5DAIA 3AIXB 2IZOB 4L6PA 3V60B 3V61B 2ZVKA 4RJFA 3K4XA 4L60A 1RWZA 3P87A 5JNED 3G65A 2AWAA 3GGRC 3U60F 3FDSD 2IO4B 1UL1A 2ZVVA 2HIIB 1AXCA 2ZVMA 2HIKB 3A1JB 1W60A 5E0UA 1YYPA 1PLRA 1GE8A 3AIZA 3P83A 3GGRA 3HSLX 5IWDA 1CZDA 1VYMA 1RXMA 3WGWA 1IZ4A 3I2MX 1ISQA 5CFKA 2IX2B 1SXJF 2NTIB 3P91A 4TR6A 5AUJA 2ZVLA 5IY4A 1UD9A 5B7OA 1IZ5A 1VYJA 3HI8A 2IZOC 5HACA 3G65B 3A2FB 3TBLA 4ZTDA 5E0VA 1PLQA 3AIXA 2HIIC 3LX1A 2HIKC 3V62B 1B8HA 3A1JC 4D2GA 3GGRB 3FDSC 1U7BA 4CS5A 5IXAA 3LX2A 5E0TA 5H0TA 4HK1A 3VKXA 1B77A 2IO4A 2AVTA 3GPMA 2HIIA 1U76A 2HIKA 5DA7A 3A1JA 4YHRA 2Z0LA 3F1WA 2IX2C 2NTIC 3U61F 1DMLA 3AIZC 2ZVWA 3U5ZF 1RXZA 2IJXA 2OD8A 1T6LA
chains in the Genus database with same CATH superfamily
2IX2A 2NTIA 3IFVA 3GPNA 5A6DA 3G65C 5DAIA 3AIXB 2IZOB 4L6PA 3V60B 3V61B 2ZVKA 4RJFA 3K4XA 4L60A 1RWZA 3P87A 5JNED 3G65A 2AWAA 3GGRC 3U60F 3FDSD 2IO4B 1UL1A 2ZVVA 2HIIB 1AXCA 2ZVMA 2HIKB 3A1JB 1W60A 5E0UA 1YYPA 1PLRA 1GE8A 3AIZA 3P83A 3GGRA 3HSLX 5IWDA 1CZDA 1VYMA 1RXMA 3WGWA 1IZ4A 3I2MX 1ISQA 5CFKA 2IX2B 1SXJF 2NTIB 3P91A 4TR6A 5AUJA 2ZVLA 5IY4A 1UD9A 5B7OA 1IZ5A 1VYJA 3HI8A 2IZOC 5HACA 3G65B 3A2FB 3TBLA 4ZTDA 5E0VA 1PLQA 3AIXA 2HIIC 3LX1A 2HIKC 3V62B 1B8HA 3A1JC 4D2GA 3GGRB 3FDSC 1U7BA 4CS5A 5IXAA 3LX2A 5E0TA 5H0TA 4HK1A 3VKXA 1B77A 2IO4A 2AVTA 3GPMA 2HIIA 1U76A 2HIKA 5DA7A 3A1JA 4YHRA 2Z0LA 3F1WA 2IX2C 2NTIC 3U61F 1DMLA 3AIZC 2ZVWA 3U5ZF 1RXZA 2IJXA 2OD8A 1T6LA
chains in the Genus database with same CATH topology
2IX2A 2NTIA 3IFVA 3GPNA 5A6DA 3G65C 5DAIA 3AIXB 2IZOB 4L6PA 3V60B 3V61B 2ZVKA 4RJFA 3K4XA 4L60A 1RWZA 3P87A 5JNED 3G65A 2AWAA 3GGRC 3U60F 3FDSD 2IO4B 1UL1A 2ZVVA 2HIIB 1AXCA 2ZVMA 2HIKB 3A1JB 1W60A 5E0UA 1YYPA 1PLRA 1GE8A 3AIZA 3P83A 3GGRA 3HSLX 5IWDA 1CZDA 1VYMA 1RXMA 3WGWA 1IZ4A 3I2MX 1ISQA 5CFKA 2IX2B 1SXJF 2NTIB 3P91A 4TR6A 5AUJA 2ZVLA 5IY4A 1UD9A 5B7OA 1IZ5A 1VYJA 3HI8A 2IZOC 5HACA 3G65B 3A2FB 3TBLA 4ZTDA 5E0VA 1PLQA 3AIXA 2HIIC 3LX1A 2HIKC 3V62B 1B8HA 3A1JC 4D2GA 3GGRB 3FDSC 1U7BA 4CS5A 5IXAA 3LX2A 5E0TA 5H0TA 4HK1A 3VKXA 1B77A 2IO4A 2AVTA 3GPMA 2HIIA 1U76A 2HIKA 5DA7A 3A1JA 4YHRA 2Z0LA 3F1WA 2IX2C 2NTIC 3U61F 1DMLA 3AIZC 2ZVWA 3U5ZF 1RXZA 2IJXA 2OD8A 1T6LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2IX2 A;  2NTI A;  3IFV A;  3GPN A;  5A6D A;  3G65 C;  5DAI A;  3AIX B;  2IZO B;  4L6P A;  3V60 B;  3V61 B;  2ZVK A;  4RJF A;  3K4X A;  4L60 A;  1RWZ A;  3P87 A;  5JNE D;  3G65 A;  2AWA A;  3GGR C;  3U60 F;  3FDS D;  2IO4 B;  1UL1 A;  2ZVV A;  2HII B;  1AXC A;  2ZVM A;  2HIK B;  3A1J B;  1W60 A;  5E0U A;  1YYP A;  1PLR A;  1GE8 A;  3AIZ A;  3P83 A;  3GGR A;  3HSL X;  5IWD A;  1CZD A;  1VYM A;  1RXM A;  3WGW A;  1IZ4 A;  3I2M X;  1ISQ A;  5CFK A;  2IX2 B;  1SXJ F;  2NTI B;  3P91 A;  4TR6 A;  5AUJ A;  2ZVL A;  5IY4 A;  1UD9 A;  5B7O A;  1IZ5 A;  1VYJ A;  3HI8 A;  2IZO C;  5HAC A;  3G65 B;  3A2F B;  3TBL A;  4ZTD A;  5E0V A;  1PLQ A;  3AIX A;  2HII C;  3LX1 A;  2HIK C;  3V62 B;  1B8H A;  3A1J C;  4D2G A;  3GGR B;  3FDS C;  1U7B A;  4CS5 A;  5IXA A;  3LX2 A;  5E0T A;  5H0T A;  4HK1 A;  3VKX A;  1B77 A;  2IO4 A;  2AVT A;  3GPM A;  2HII A;  1U76 A;  2HIK A;  5DA7 A;  3A1J A;  4YHR A;  2Z0L A;  3F1W A;  2IX2 C;  2NTI C;  3U61 F;  1DML A;  3AIZ C;  2ZVW A;  3U5Z F;  1RXZ A;  2IJX A;  2OD8 A;  1T6L A; 
#chains in the Genus database with same CATH topology
 2IX2 A;  2NTI A;  3IFV A;  3GPN A;  5A6D A;  3G65 C;  5DAI A;  3AIX B;  2IZO B;  4L6P A;  3V60 B;  3V61 B;  2ZVK A;  4RJF A;  3K4X A;  4L60 A;  1RWZ A;  3P87 A;  5JNE D;  3G65 A;  2AWA A;  3GGR C;  3U60 F;  3FDS D;  2IO4 B;  1UL1 A;  2ZVV A;  2HII B;  1AXC A;  2ZVM A;  2HIK B;  3A1J B;  1W60 A;  5E0U A;  1YYP A;  1PLR A;  1GE8 A;  3AIZ A;  3P83 A;  3GGR A;  3HSL X;  5IWD A;  1CZD A;  1VYM A;  1RXM A;  3WGW A;  1IZ4 A;  3I2M X;  1ISQ A;  5CFK A;  2IX2 B;  1SXJ F;  2NTI B;  3P91 A;  4TR6 A;  5AUJ A;  2ZVL A;  5IY4 A;  1UD9 A;  5B7O A;  1IZ5 A;  1VYJ A;  3HI8 A;  2IZO C;  5HAC A;  3G65 B;  3A2F B;  3TBL A;  4ZTD A;  5E0V A;  1PLQ A;  3AIX A;  2HII C;  3LX1 A;  2HIK C;  3V62 B;  1B8H A;  3A1J C;  4D2G A;  3GGR B;  3FDS C;  1U7B A;  4CS5 A;  5IXA A;  3LX2 A;  5E0T A;  5H0T A;  4HK1 A;  3VKX A;  1B77 A;  2IO4 A;  2AVT A;  3GPM A;  2HII A;  1U76 A;  2HIK A;  5DA7 A;  3A1J A;  4YHR A;  2Z0L A;  3F1W A;  2IX2 C;  2NTI C;  3U61 F;  1DML A;  3AIZ C;  2ZVW A;  3U5Z F;  1RXZ A;  2IJX A;  2OD8 A;  1T6L A; 
#chains in the Genus database with same CATH homology
 2IX2 A;  2NTI A;  3IFV A;  3GPN A;  5A6D A;  3G65 C;  5DAI A;  3AIX B;  2IZO B;  4L6P A;  3V60 B;  3V61 B;  2ZVK A;  4RJF A;  3K4X A;  4L60 A;  1RWZ A;  3P87 A;  5JNE D;  3G65 A;  2AWA A;  3GGR C;  3U60 F;  3FDS D;  2IO4 B;  1UL1 A;  2ZVV A;  2HII B;  1AXC A;  2ZVM A;  2HIK B;  3A1J B;  1W60 A;  5E0U A;  1YYP A;  1PLR A;  1GE8 A;  3AIZ A;  3P83 A;  3GGR A;  3HSL X;  5IWD A;  1CZD A;  1VYM A;  1RXM A;  3WGW A;  1IZ4 A;  3I2M X;  1ISQ A;  5CFK A;  2IX2 B;  1SXJ F;  2NTI B;  3P91 A;  4TR6 A;  5AUJ A;  2ZVL A;  5IY4 A;  1UD9 A;  5B7O A;  1IZ5 A;  1VYJ A;  3HI8 A;  2IZO C;  5HAC A;  3G65 B;  3A2F B;  3TBL A;  4ZTD A;  5E0V A;  1PLQ A;  3AIX A;  2HII C;  3LX1 A;  2HIK C;  3V62 B;  1B8H A;  3A1J C;  4D2G A;  3GGR B;  3FDS C;  1U7B A;  4CS5 A;  5IXA A;  3LX2 A;  5E0T A;  5H0T A;  4HK1 A;  3VKX A;  1B77 A;  2IO4 A;  2AVT A;  3GPM A;  2HII A;  1U76 A;  2HIK A;  5DA7 A;  3A1J A;  4YHR A;  2Z0L A;  3F1W A;  2IX2 C;  2NTI C;  3U61 F;  1DML A;  3AIZ C;  2ZVW A;  3U5Z F;  1RXZ A;  2IJX A;  2OD8 A;  1T6L A; 
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