1RXZ | Genus

Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	56
sequence length	245
structure length	245
Chain Sequence	MIDVIMTGELLKTVTRAIVALVSEARIHFLEKGLHSRAVDPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDRIFDISKSISTKDLVELIVEDESTLKVKFGSVEYKVALIDPSAIRKEPRIPELELPAKIVMDAGEFKKAIAAADKISDQVIFRSDKEGFRIEAKGDVDSIVFHMTETELIEFNGGEARSMFSVDYLKEFCKVAGSGDLLTIHLGTNYPVRLVFELVGGRAKVEYILAPRIESE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 245 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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245 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Replication
source organism	Archaeoglobus fulgidus
publication title	Structural Basis for FEN-1 Substrate Specificity and PCNA-Mediated Activation in DNA Replication and Repair pubmed doi rcsb
molecule keywords	DNA polymerase sliding clamp
total genus	56
structure length	245
sequence length	245
ec nomenclature
pdb deposition date	2003-12-18

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00705	PCNA_N	Proliferating cell nuclear antigen, N-terminal domain
A	PF02747	PCNA_C	Proliferating cell nuclear antigen, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen	Proliferating Cell Nuclear Antigen	1rxzA00

1AXCA 5AUJA 2IO4B 3AIZC 3TBLA 1IZ5A 3V61B 3AIXA 3GGRC 1CZDA 2HIIC 1RWZA 3A1JA 3U5ZF 2Z0LA 3IFVA 4L6PA 5E0VA 5IWDA 5CFKA 1SXJF 5E0UA 1U76A 4TR6A 2HIIB 3LX2A 2IJXA 1T6LA 5IXAA 5DAIA 3V62B 3A1JC 4D2GA 3AIXB 1RXMA 3HSLX 3A1JB 4RJFA 1UD9A 1VYJA 2IX2A 5A6DA 4CS5A 4ZTDA 1UL1A 3I2MX 3VKXA 3P83A 1B8HA 3GGRB 5DA7A 2NTIA 1U7BA 5E0TA 2HIKA 1PLRA 5B7OA 3U60F 2AWAA 2IX2C 4YHRA 2IO4A 2OD8A 2IX2B 2NTIC 3HI8A 1RXZA 3GPMA 2HIKC 1W60A 5IY4A 2ZVKA 2IZOC 2NTIB 1B77A 1ISQA 1YYPA 3G65A 2ZVLA 1DMLA 2IZOB 3FDSC 3V60B 3F1WA 5HACA 2ZVMA 3GPNA 1IZ4A 3U61F 3LX1A 5JNED 3FDSD 2AVTA 3WGWA 4L60A 3P87A 3G65C 5H0TA 1PLQA 2ZVWA 3G65B 4HK1A 3AIZA 1VYMA 2ZVVA 2HIKB 1GE8A 3GGRA 3K4XA 2HIIA 3A2FB 3P91A
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1AXC A;  5AUJ A;  2IO4 B;  3AIZ C;  3TBL A;  1IZ5 A;  3V61 B;  3AIX A;  3GGR C;  1CZD A;  2HII C;  1RWZ A;  3A1J A;  3U5Z F;  2Z0L A;  3IFV A;  4L6P A;  5E0V A;  5IWD A;  5CFK A;  1SXJ F;  5E0U A;  1U76 A;  4TR6 A;  2HII B;  3LX2 A;  2IJX A;  1T6L A;  5IXA A;  5DAI A;  3V62 B;  3A1J C;  4D2G A;  3AIX B;  1RXM A;  3HSL X;  3A1J B;  4RJF A;  1UD9 A;  1VYJ A;  2IX2 A;  5A6D A;  4CS5 A;  4ZTD A;  1UL1 A;  3I2M X;  3VKX A;  3P83 A;  1B8H A;  3GGR B;  5DA7 A;  2NTI A;  1U7B A;  5E0T A;  2HIK A;  1PLR A;  5B7O A;  3U60 F;  2AWA A;  2IX2 C;  4YHR A;  2IO4 A;  2OD8 A;  2IX2 B;  2NTI C;  3HI8 A;  1RXZ A;  3GPM A;  2HIK C;  1W60 A;  5IY4 A;  2ZVK A;  2IZO C;  2NTI B;  1B77 A;  1ISQ A;  1YYP A;  3G65 A;  2ZVL A;  1DML A;  2IZO B;  3FDS C;  3V60 B;  3F1W A;  5HAC A;  2ZVM A;  3GPN A;  1IZ4 A;  3U61 F;  3LX1 A;  5JNE D;  3FDS D;  2AVT A;  3WGW A;  4L60 A;  3P87 A;  3G65 C;  5H0T A;  1PLQ A;  2ZVW A;  3G65 B;  4HK1 A;  3AIZ A;  1VYM A;  2ZVV A;  2HIK B;  1GE8 A;  3GGR A;  3K4X A;  2HII A;  3A2F B;  3P91 A; 
#chains in the Genus database with same CATH topology
 1AXC A;  5AUJ A;  2IO4 B;  3AIZ C;  3TBL A;  1IZ5 A;  3V61 B;  3AIX A;  3GGR C;  1CZD A;  2HII C;  1RWZ A;  3A1J A;  3U5Z F;  2Z0L A;  3IFV A;  4L6P A;  5E0V A;  5IWD A;  5CFK A;  1SXJ F;  5E0U A;  1U76 A;  4TR6 A;  2HII B;  3LX2 A;  2IJX A;  1T6L A;  5IXA A;  5DAI A;  3V62 B;  3A1J C;  4D2G A;  3AIX B;  1RXM A;  3HSL X;  3A1J B;  4RJF A;  1UD9 A;  1VYJ A;  2IX2 A;  5A6D A;  4CS5 A;  4ZTD A;  1UL1 A;  3I2M X;  3VKX A;  3P83 A;  1B8H A;  3GGR B;  5DA7 A;  2NTI A;  1U7B A;  5E0T A;  2HIK A;  1PLR A;  5B7O A;  3U60 F;  2AWA A;  2IX2 C;  4YHR A;  2IO4 A;  2OD8 A;  2IX2 B;  2NTI C;  3HI8 A;  1RXZ A;  3GPM A;  2HIK C;  1W60 A;  5IY4 A;  2ZVK A;  2IZO C;  2NTI B;  1B77 A;  1ISQ A;  1YYP A;  3G65 A;  2ZVL A;  1DML A;  2IZO B;  3FDS C;  3V60 B;  3F1W A;  5HAC A;  2ZVM A;  3GPN A;  1IZ4 A;  3U61 F;  3LX1 A;  5JNE D;  3FDS D;  2AVT A;  3WGW A;  4L60 A;  3P87 A;  3G65 C;  5H0T A;  1PLQ A;  2ZVW A;  3G65 B;  4HK1 A;  3AIZ A;  1VYM A;  2ZVV A;  2HIK B;  1GE8 A;  3GGR A;  3K4X A;  2HII A;  3A2F B;  3P91 A; 
#chains in the Genus database with same CATH homology
 1AXC A;  5AUJ A;  2IO4 B;  3AIZ C;  3TBL A;  1IZ5 A;  3V61 B;  3AIX A;  3GGR C;  1CZD A;  2HII C;  1RWZ A;  3A1J A;  3U5Z F;  2Z0L A;  3IFV A;  4L6P A;  5E0V A;  5IWD A;  5CFK A;  1SXJ F;  5E0U A;  1U76 A;  4TR6 A;  2HII B;  3LX2 A;  2IJX A;  1T6L A;  5IXA A;  5DAI A;  3V62 B;  3A1J C;  4D2G A;  3AIX B;  1RXM A;  3HSL X;  3A1J B;  4RJF A;  1UD9 A;  1VYJ A;  2IX2 A;  5A6D A;  4CS5 A;  4ZTD A;  1UL1 A;  3I2M X;  3VKX A;  3P83 A;  1B8H A;  3GGR B;  5DA7 A;  2NTI A;  1U7B A;  5E0T A;  2HIK A;  1PLR A;  5B7O A;  3U60 F;  2AWA A;  2IX2 C;  4YHR A;  2IO4 A;  2OD8 A;  2IX2 B;  2NTI C;  3HI8 A;  1RXZ A;  3GPM A;  2HIK C;  1W60 A;  5IY4 A;  2ZVK A;  2IZO C;  2NTI B;  1B77 A;  1ISQ A;  1YYP A;  3G65 A;  2ZVL A;  1DML A;  2IZO B;  3FDS C;  3V60 B;  3F1W A;  5HAC A;  2ZVM A;  3GPN A;  1IZ4 A;  3U61 F;  3LX1 A;  5JNE D;  3FDS D;  2AVT A;  3WGW A;  4L60 A;  3P87 A;  3G65 C;  5H0T A;  1PLQ A;  2ZVW A;  3G65 B;  4HK1 A;  3AIZ A;  1VYM A;  2ZVV A;  2HIK B;  1GE8 A;  3GGR A;  3K4X A;  2HII A;  3A2F B;  3P91 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1RXZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations