1SXJF

Crystal structure of the eukaryotic clamp loader (replication factor c, rfc) bound to the dna sliding clamp (proliferating cell nuclear antigen, pcna)
Total Genus 46

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
46
sequence length
258
structure length
258
Chain Sequence
ASMLEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDGIIAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEELQYDSTLSLPSSEFSKIVRDLSQLSDSINIMITKETIKFVADGDIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFLAPKFND

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (3-6)TIV2 (62-65)S7 (87-91)TVIII1 (6-9)AH1 (9-22)AH2 (72-79)S2 (28-30)S3 (34-40)S6 (66-68)TI1 (31-34)S5 (57-61)3H1 (54-56)TI2 (41-44)S4 (46-53)S15 (203-208)TI5 (241-244)S17 (235-241)TIV3 (83-86)TIV6 (105-108)TVIII2 (133-136)3H2 (191-193)S10 (135-139)AH3 (141-153)3H3 (218-220)TVIII3 (155-158)S12 (167-172)S11 (157-162)TIV7 (163-166)S13 (177-182)TIV8 (187-191)TII1 (230-233)AH4 (209-216)S18 (244-250)S14 (196-200)S16 (225-229)TI4 (173-176)TI3 (79-82)S8 (98-104)S9 (111-117)Updating...
connected with : NaN
molecule tags Replication
source organism Saccharomyces cerevisiae
publication title Structural analysis of a eukaryotic sliding DNA clamp-clamp loader complex.
pubmed doi rcsb
molecule keywords Activator 1 95 kDa subunit
total genus 46
structure length 258
sequence length 258
chains with identical sequence G, H
ec nomenclature
pdb deposition date 2004-03-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
F PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 1sxjF00
5E0UA 3P87A 1IZ5A 5IXAA 3A1JA 1VYMA 2HIIA 3GGRA 3A1JB 3GGRB 4RJFA 1RWZA 1W60A 5AUJA 1RXMA 2ZVWA 1DMLA 3P91A 2HIIC 3U5ZF 3FDSC 3G65A 5DA7A 1CZDA 2HIKC 5JNED 3HI8A 4HK1A 2AWAA 2ZVMA 3K4XA 3TBLA 1U7BA 3GPNA 3G65C 3V62B 2Z0LA 3U61F 4CS5A 3WGWA 2IZOB 4ZTDA 1PLRA 2NTIA 3A1JC 2IX2B 3AIZA 5CFKA 1IZ4A 2NTIB 3GGRC 3GPMA 3P83A 3IFVA 5B7OA 1YYPA 5A6DA 1UD9A 3V60B 1B77A 3LX1A 4TR6A 1U76A 3V61B 1GE8A 3AIXB 4YHRA 5HACA 1VYJA 1SXJF 1UL1A 3I2MX 1PLQA 4L6PA 5H0TA 2AVTA 2IX2A 1ISQA 2IJXA 2ZVVA 3LX2A 3VKXA 5IY4A 2IO4A 1RXZA 2IZOC 3F1WA 2ZVKA 2IO4B 1T6LA 2IX2C 4L60A 2NTIC 5E0TA 3AIXA 1AXCA 5DAIA 2OD8A 3AIZC 2HIIB 2HIKA 3U60F 5IWDA 3FDSD 3A2FB 1B8HA 2HIKB 5E0VA 2ZVLA 3HSLX 4D2GA 3G65B
chains in the Genus database with same CATH superfamily
5E0UA 3P87A 1IZ5A 5IXAA 3A1JA 1VYMA 2HIIA 3GGRA 3A1JB 3GGRB 4RJFA 1RWZA 1W60A 5AUJA 1RXMA 2ZVWA 1DMLA 3P91A 2HIIC 3U5ZF 3FDSC 3G65A 5DA7A 1CZDA 2HIKC 5JNED 3HI8A 4HK1A 2AWAA 2ZVMA 3K4XA 3TBLA 1U7BA 3GPNA 3G65C 3V62B 2Z0LA 3U61F 4CS5A 3WGWA 2IZOB 4ZTDA 1PLRA 2NTIA 3A1JC 2IX2B 3AIZA 5CFKA 1IZ4A 2NTIB 3GGRC 3GPMA 3P83A 3IFVA 5B7OA 1YYPA 5A6DA 1UD9A 3V60B 1B77A 3LX1A 4TR6A 1U76A 3V61B 1GE8A 3AIXB 4YHRA 5HACA 1VYJA 1SXJF 1UL1A 3I2MX 1PLQA 4L6PA 5H0TA 2AVTA 2IX2A 1ISQA 2IJXA 2ZVVA 3LX2A 3VKXA 5IY4A 2IO4A 1RXZA 2IZOC 3F1WA 2ZVKA 2IO4B 1T6LA 2IX2C 4L60A 2NTIC 5E0TA 3AIXA 1AXCA 5DAIA 2OD8A 3AIZC 2HIIB 2HIKA 3U60F 5IWDA 3FDSD 3A2FB 1B8HA 2HIKB 5E0VA 2ZVLA 3HSLX 4D2GA 3G65B
chains in the Genus database with same CATH topology
5E0UA 3P87A 1IZ5A 5IXAA 3A1JA 1VYMA 2HIIA 3GGRA 3A1JB 3GGRB 4RJFA 1RWZA 1W60A 5AUJA 1RXMA 2ZVWA 1DMLA 3P91A 2HIIC 3U5ZF 3FDSC 3G65A 5DA7A 1CZDA 2HIKC 5JNED 3HI8A 4HK1A 2AWAA 2ZVMA 3K4XA 3TBLA 1U7BA 3GPNA 3G65C 3V62B 2Z0LA 3U61F 4CS5A 3WGWA 2IZOB 4ZTDA 1PLRA 2NTIA 3A1JC 2IX2B 3AIZA 5CFKA 1IZ4A 2NTIB 3GGRC 3GPMA 3P83A 3IFVA 5B7OA 1YYPA 5A6DA 1UD9A 3V60B 1B77A 3LX1A 4TR6A 1U76A 3V61B 1GE8A 3AIXB 4YHRA 5HACA 1VYJA 1SXJF 1UL1A 3I2MX 1PLQA 4L6PA 5H0TA 2AVTA 2IX2A 1ISQA 2IJXA 2ZVVA 3LX2A 3VKXA 5IY4A 2IO4A 1RXZA 2IZOC 3F1WA 2ZVKA 2IO4B 1T6LA 2IX2C 4L60A 2NTIC 5E0TA 3AIXA 1AXCA 5DAIA 2OD8A 3AIZC 2HIIB 2HIKA 3U60F 5IWDA 3FDSD 3A2FB 1B8HA 2HIKB 5E0VA 2ZVLA 3HSLX 4D2GA 3G65B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5E0U A;  3P87 A;  1IZ5 A;  5IXA A;  3A1J A;  1VYM A;  2HII A;  3GGR A;  3A1J B;  3GGR B;  4RJF A;  1RWZ A;  1W60 A;  5AUJ A;  1RXM A;  2ZVW A;  1DML A;  3P91 A;  2HII C;  3U5Z F;  3FDS C;  3G65 A;  5DA7 A;  1CZD A;  2HIK C;  5JNE D;  3HI8 A;  4HK1 A;  2AWA A;  2ZVM A;  3K4X A;  3TBL A;  1U7B A;  3GPN A;  3G65 C;  3V62 B;  2Z0L A;  3U61 F;  4CS5 A;  3WGW A;  2IZO B;  4ZTD A;  1PLR A;  2NTI A;  3A1J C;  2IX2 B;  3AIZ A;  5CFK A;  1IZ4 A;  2NTI B;  3GGR C;  3GPM A;  3P83 A;  3IFV A;  5B7O A;  1YYP A;  5A6D A;  1UD9 A;  3V60 B;  1B77 A;  3LX1 A;  4TR6 A;  1U76 A;  3V61 B;  1GE8 A;  3AIX B;  4YHR A;  5HAC A;  1VYJ A;  1SXJ F;  1UL1 A;  3I2M X;  1PLQ A;  4L6P A;  5H0T A;  2AVT A;  2IX2 A;  1ISQ A;  2IJX A;  2ZVV A;  3LX2 A;  3VKX A;  5IY4 A;  2IO4 A;  1RXZ A;  2IZO C;  3F1W A;  2ZVK A;  2IO4 B;  1T6L A;  2IX2 C;  4L60 A;  2NTI C;  5E0T A;  3AIX A;  1AXC A;  5DAI A;  2OD8 A;  3AIZ C;  2HII B;  2HIK A;  3U60 F;  5IWD A;  3FDS D;  3A2F B;  1B8H A;  2HIK B;  5E0V A;  2ZVL A;  3HSL X;  4D2G A;  3G65 B; 
#chains in the Genus database with same CATH topology
 5E0U A;  3P87 A;  1IZ5 A;  5IXA A;  3A1J A;  1VYM A;  2HII A;  3GGR A;  3A1J B;  3GGR B;  4RJF A;  1RWZ A;  1W60 A;  5AUJ A;  1RXM A;  2ZVW A;  1DML A;  3P91 A;  2HII C;  3U5Z F;  3FDS C;  3G65 A;  5DA7 A;  1CZD A;  2HIK C;  5JNE D;  3HI8 A;  4HK1 A;  2AWA A;  2ZVM A;  3K4X A;  3TBL A;  1U7B A;  3GPN A;  3G65 C;  3V62 B;  2Z0L A;  3U61 F;  4CS5 A;  3WGW A;  2IZO B;  4ZTD A;  1PLR A;  2NTI A;  3A1J C;  2IX2 B;  3AIZ A;  5CFK A;  1IZ4 A;  2NTI B;  3GGR C;  3GPM A;  3P83 A;  3IFV A;  5B7O A;  1YYP A;  5A6D A;  1UD9 A;  3V60 B;  1B77 A;  3LX1 A;  4TR6 A;  1U76 A;  3V61 B;  1GE8 A;  3AIX B;  4YHR A;  5HAC A;  1VYJ A;  1SXJ F;  1UL1 A;  3I2M X;  1PLQ A;  4L6P A;  5H0T A;  2AVT A;  2IX2 A;  1ISQ A;  2IJX A;  2ZVV A;  3LX2 A;  3VKX A;  5IY4 A;  2IO4 A;  1RXZ A;  2IZO C;  3F1W A;  2ZVK A;  2IO4 B;  1T6L A;  2IX2 C;  4L60 A;  2NTI C;  5E0T A;  3AIX A;  1AXC A;  5DAI A;  2OD8 A;  3AIZ C;  2HII B;  2HIK A;  3U60 F;  5IWD A;  3FDS D;  3A2F B;  1B8H A;  2HIK B;  5E0V A;  2ZVL A;  3HSL X;  4D2G A;  3G65 B; 
#chains in the Genus database with same CATH homology
 5E0U A;  3P87 A;  1IZ5 A;  5IXA A;  3A1J A;  1VYM A;  2HII A;  3GGR A;  3A1J B;  3GGR B;  4RJF A;  1RWZ A;  1W60 A;  5AUJ A;  1RXM A;  2ZVW A;  1DML A;  3P91 A;  2HII C;  3U5Z F;  3FDS C;  3G65 A;  5DA7 A;  1CZD A;  2HIK C;  5JNE D;  3HI8 A;  4HK1 A;  2AWA A;  2ZVM A;  3K4X A;  3TBL A;  1U7B A;  3GPN A;  3G65 C;  3V62 B;  2Z0L A;  3U61 F;  4CS5 A;  3WGW A;  2IZO B;  4ZTD A;  1PLR A;  2NTI A;  3A1J C;  2IX2 B;  3AIZ A;  5CFK A;  1IZ4 A;  2NTI B;  3GGR C;  3GPM A;  3P83 A;  3IFV A;  5B7O A;  1YYP A;  5A6D A;  1UD9 A;  3V60 B;  1B77 A;  3LX1 A;  4TR6 A;  1U76 A;  3V61 B;  1GE8 A;  3AIX B;  4YHR A;  5HAC A;  1VYJ A;  1SXJ F;  1UL1 A;  3I2M X;  1PLQ A;  4L6P A;  5H0T A;  2AVT A;  2IX2 A;  1ISQ A;  2IJX A;  2ZVV A;  3LX2 A;  3VKX A;  5IY4 A;  2IO4 A;  1RXZ A;  2IZO C;  3F1W A;  2ZVK A;  2IO4 B;  1T6L A;  2IX2 C;  4L60 A;  2NTI C;  5E0T A;  3AIX A;  1AXC A;  5DAI A;  2OD8 A;  3AIZ C;  2HII B;  2HIK A;  3U60 F;  5IWD A;  3FDS D;  3A2F B;  1B8H A;  2HIK B;  5E0V A;  2ZVL A;  3HSL X;  4D2G A;  3G65 B; 
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