1U61 | Genus

Total Genus 46

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	46
sequence length	127
structure length	127
Chain Sequence	IDAKQLNSLALAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRGRNANSGTVPKNTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKAIAVLEE

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 127 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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127 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Bacillus cereus
publication title	X-ray crystal structure of conserved hypothetical protein from Bacillus cereus rcsb
molecule keywords	hypothetical protein
total genus	46
structure length	127
sequence length	127
ec nomenclature
pdb deposition date	2004-07-29

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00636	Ribonuclease_3	Ribonuclease III domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.10.1520.10	Mainly Alpha	Orthogonal Bundle	Ribonuclease iii, N-terminal Endonuclease Domain; Chain A	Ribonuclease III domain	1u61A00

4M30A 1YYWA 4OOGC 3O2RA 1I4SA 3RV1A 3O2RB 2A11A 3RV0A 3C4TA 4M2ZA 2GSLA 1U61A 2NUFA 2EB1A 1YYKA 1O0WA 2NUGA 2EZ6A 1RC7A 3C4BA 3N3WA 2FFLA 1YZ9A 2NUEA 1YYOA 2QVWA 1JFZA 4OUNA 1RC5A
chains in the Genus database with same CATH superfamily

4M30A 1YYWA 4OOGC 3O2RA 1I4SA 3RV1A 3O2RB 2A11A 3RV0A 3C4TA 4M2ZA 2GSLA 1U61A 2NUFA 2EB1A 1YYKA 1O0WA 2NUGA 2EZ6A 1RC7A 3C4BA 3N3WA 2FFLA 1YZ9A 2NUEA 1YYOA 2QVWA 1JFZA 4OUNA 1ZTDA 1RC5A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4M30 A;  1YYW A;  4OOG C;  3O2R A;  1I4S A;  3RV1 A;  3O2R B;  2A11 A;  3RV0 A;  3C4T A;  4M2Z A;  2GSL A;  1U61 A;  2NUF A;  2EB1 A;  1YYK A;  1O0W A;  2NUG A;  2EZ6 A;  1RC7 A;  3C4B A;  3N3W A;  2FFL A;  1YZ9 A;  2NUE A;  1YYO A;  2QVW A;  1JFZ A;  4OUN A;  1RC5 A; 
#chains in the Genus database with same CATH topology
 4M30 A;  1YYW A;  4OOG C;  3O2R A;  1I4S A;  3RV1 A;  3O2R B;  2A11 A;  3RV0 A;  3C4T A;  4M2Z A;  2GSL A;  1U61 A;  2NUF A;  2EB1 A;  1YYK A;  1O0W A;  2NUG A;  2EZ6 A;  1RC7 A;  3C4B A;  3N3W A;  2FFL A;  1YZ9 A;  2NUE A;  1YYO A;  2QVW A;  1JFZ A;  4OUN A;  1ZTD A;  1RC5 A; 
#chains in the Genus database with same CATH homology
 4M30 A;  1YYW A;  4OOG C;  3O2R A;  1I4S A;  3RV1 A;  3O2R B;  2A11 A;  3RV0 A;  3C4T A;  4M2Z A;  2GSL A;  1U61 A;  2NUF A;  2EB1 A;  1YYK A;  1O0W A;  2NUG A;  2EZ6 A;  1RC7 A;  3C4B A;  3N3W A;  2FFL A;  1YZ9 A;  2NUE A;  1YYO A;  2QVW A;  1JFZ A;  4OUN A;  1RC5 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1U61A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations