1U76A

Crystal structure of hpcna bound to residues 452-466 of the dna polymerase-delta-p66 subunit
Total Genus 58

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
257
structure length
253
Chain Sequence
MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIED

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTVIII2 (62-65)TI3 (93-96)S1 (2-6)S7 (98-104)TIV1 (6-9)TIV3 (57-60)AH1 (9-20)TIV4 (83-86)3H2 (216-221)S17 (245-251)TI1 (20-23)TIV2 (41-44)S5 (66-71)TVIII1 (23-26)AH2 (72-80)S2 (25-31)TI2 (31-34)S3 (34-40)S4 (46-53)S14 (203-208)3H1 (54-56)S16 (235-241)TIV5 (105-108)TIV6 (108-111)TVIII3 (133-136)S13 (196-199)S9 (135-140)S15 (224-229)TVIII5 (222-225)AH3 (141-154)AH4 (209-215)S10 (157-162)S11 (166-173)TIV7 (163-166)TIV8 (191-194)TVIII4 (199-202)TIV9 (230-233)TIV10 (241-244)S6 (87-92)S8 (111-117)S12 (176-183)Updating...
connected with : NaN
molecule tags Replication
source organism Homo sapiens
publication title Structural and Thermodynamic Analysis of Human PCNA with Peptides Derived from DNA Polymerase-delta p66 Subunit and Flap Endonuclease-1.
pubmed doi rcsb
molecule keywords Proliferating cell nuclear antigen
total genus 58
structure length 253
sequence length 257
chains with identical sequence C, E
ec nomenclature
pdb deposition date 2004-08-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 1u76A00
5A6DA 1T6LA 2NTIA 2IZOB 3G65C 1GE8A 1SXJF 2ZVLA 3GPNA 3U5ZF 3FDSD 1CZDA 4CS5A 4D2GA 2HIKC 2ZVKA 3GPMA 2IX2C 5E0UA 3GGRA 1IZ4A 3V60B 3AIXA 5DAIA 3AIXB 2Z0LA 5E0VA 3LX1A 5E0TA 1DMLA 4RJFA 3FDSC 1PLRA 3P87A 2HIIA 3HI8A 2HIIB 3U61F 3A1JA 3A1JB 4ZTDA 3V61B 1PLQA 5CFKA 3AIZA 3F1WA 3I2MX 2ZVVA 3VKXA 2NTIC 2IZOC 1U7BA 1RXMA 2IX2B 1YYPA 5IY4A 2ZVMA 5DA7A 3HSLX 4HK1A 3GGRC 5HACA 5B7OA 2IJXA 1B8HA 5AUJA 1W60A 3G65A 3G65B 3U60F 2IO4A 3LX2A 2IO4B 1VYMA 1B77A 5H0TA 2OD8A 1UD9A 1AXCA 2ZVWA 3K4XA 1RXZA 2HIKA 2HIKB 1VYJA 3WGWA 3A1JC 3V62B 1RWZA 2IX2A 3A2FB 2AVTA 2AWAA 1IZ5A 2NTIB 5JNED 3AIZC 4L60A 5IXAA 3TBLA 1ISQA 4L6PA 1U76A 4YHRA 1UL1A 3GGRB 3P83A 5IWDA 4TR6A 3P91A 2HIIC 3IFVA
chains in the Genus database with same CATH superfamily
5A6DA 1T6LA 2NTIA 2IZOB 3G65C 1GE8A 1SXJF 2ZVLA 3GPNA 3U5ZF 3FDSD 1CZDA 4CS5A 4D2GA 2HIKC 2ZVKA 3GPMA 2IX2C 5E0UA 3GGRA 1IZ4A 3V60B 3AIXA 5DAIA 3AIXB 2Z0LA 5E0VA 3LX1A 5E0TA 1DMLA 4RJFA 3FDSC 1PLRA 3P87A 2HIIA 3HI8A 2HIIB 3U61F 3A1JA 3A1JB 4ZTDA 3V61B 1PLQA 5CFKA 3AIZA 3F1WA 3I2MX 2ZVVA 3VKXA 2NTIC 2IZOC 1U7BA 1RXMA 2IX2B 1YYPA 5IY4A 2ZVMA 5DA7A 3HSLX 4HK1A 3GGRC 5HACA 5B7OA 2IJXA 1B8HA 5AUJA 1W60A 3G65A 3G65B 3U60F 2IO4A 3LX2A 2IO4B 1VYMA 1B77A 5H0TA 2OD8A 1UD9A 1AXCA 2ZVWA 3K4XA 1RXZA 2HIKA 2HIKB 1VYJA 3WGWA 3A1JC 3V62B 1RWZA 2IX2A 3A2FB 2AVTA 2AWAA 1IZ5A 2NTIB 5JNED 3AIZC 4L60A 5IXAA 3TBLA 1ISQA 4L6PA 1U76A 4YHRA 1UL1A 3GGRB 3P83A 5IWDA 4TR6A 3P91A 2HIIC 3IFVA
chains in the Genus database with same CATH topology
5A6DA 1T6LA 2NTIA 2IZOB 3G65C 1GE8A 1SXJF 2ZVLA 3GPNA 3U5ZF 3FDSD 1CZDA 4CS5A 4D2GA 2HIKC 2ZVKA 3GPMA 2IX2C 5E0UA 3GGRA 1IZ4A 3V60B 3AIXA 5DAIA 3AIXB 2Z0LA 5E0VA 3LX1A 5E0TA 1DMLA 4RJFA 3FDSC 1PLRA 3P87A 2HIIA 3HI8A 2HIIB 3U61F 3A1JA 3A1JB 4ZTDA 3V61B 1PLQA 5CFKA 3AIZA 3F1WA 3I2MX 2ZVVA 3VKXA 2NTIC 2IZOC 1U7BA 1RXMA 2IX2B 1YYPA 5IY4A 2ZVMA 5DA7A 3HSLX 4HK1A 3GGRC 5HACA 5B7OA 2IJXA 1B8HA 5AUJA 1W60A 3G65A 3G65B 3U60F 2IO4A 3LX2A 2IO4B 1VYMA 1B77A 5H0TA 2OD8A 1UD9A 1AXCA 2ZVWA 3K4XA 1RXZA 2HIKA 2HIKB 1VYJA 3WGWA 3A1JC 3V62B 1RWZA 2IX2A 3A2FB 2AVTA 2AWAA 1IZ5A 2NTIB 5JNED 3AIZC 4L60A 5IXAA 3TBLA 1ISQA 4L6PA 1U76A 4YHRA 1UL1A 3GGRB 3P83A 5IWDA 4TR6A 3P91A 2HIIC 3IFVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5A6D A;  1T6L A;  2NTI A;  2IZO B;  3G65 C;  1GE8 A;  1SXJ F;  2ZVL A;  3GPN A;  3U5Z F;  3FDS D;  1CZD A;  4CS5 A;  4D2G A;  2HIK C;  2ZVK A;  3GPM A;  2IX2 C;  5E0U A;  3GGR A;  1IZ4 A;  3V60 B;  3AIX A;  5DAI A;  3AIX B;  2Z0L A;  5E0V A;  3LX1 A;  5E0T A;  1DML A;  4RJF A;  3FDS C;  1PLR A;  3P87 A;  2HII A;  3HI8 A;  2HII B;  3U61 F;  3A1J A;  3A1J B;  4ZTD A;  3V61 B;  1PLQ A;  5CFK A;  3AIZ A;  3F1W A;  3I2M X;  2ZVV A;  3VKX A;  2NTI C;  2IZO C;  1U7B A;  1RXM A;  2IX2 B;  1YYP A;  5IY4 A;  2ZVM A;  5DA7 A;  3HSL X;  4HK1 A;  3GGR C;  5HAC A;  5B7O A;  2IJX A;  1B8H A;  5AUJ A;  1W60 A;  3G65 A;  3G65 B;  3U60 F;  2IO4 A;  3LX2 A;  2IO4 B;  1VYM A;  1B77 A;  5H0T A;  2OD8 A;  1UD9 A;  1AXC A;  2ZVW A;  3K4X A;  1RXZ A;  2HIK A;  2HIK B;  1VYJ A;  3WGW A;  3A1J C;  3V62 B;  1RWZ A;  2IX2 A;  3A2F B;  2AVT A;  2AWA A;  1IZ5 A;  2NTI B;  5JNE D;  3AIZ C;  4L60 A;  5IXA A;  3TBL A;  1ISQ A;  4L6P A;  1U76 A;  4YHR A;  1UL1 A;  3GGR B;  3P83 A;  5IWD A;  4TR6 A;  3P91 A;  2HII C;  3IFV A; 
#chains in the Genus database with same CATH topology
 5A6D A;  1T6L A;  2NTI A;  2IZO B;  3G65 C;  1GE8 A;  1SXJ F;  2ZVL A;  3GPN A;  3U5Z F;  3FDS D;  1CZD A;  4CS5 A;  4D2G A;  2HIK C;  2ZVK A;  3GPM A;  2IX2 C;  5E0U A;  3GGR A;  1IZ4 A;  3V60 B;  3AIX A;  5DAI A;  3AIX B;  2Z0L A;  5E0V A;  3LX1 A;  5E0T A;  1DML A;  4RJF A;  3FDS C;  1PLR A;  3P87 A;  2HII A;  3HI8 A;  2HII B;  3U61 F;  3A1J A;  3A1J B;  4ZTD A;  3V61 B;  1PLQ A;  5CFK A;  3AIZ A;  3F1W A;  3I2M X;  2ZVV A;  3VKX A;  2NTI C;  2IZO C;  1U7B A;  1RXM A;  2IX2 B;  1YYP A;  5IY4 A;  2ZVM A;  5DA7 A;  3HSL X;  4HK1 A;  3GGR C;  5HAC A;  5B7O A;  2IJX A;  1B8H A;  5AUJ A;  1W60 A;  3G65 A;  3G65 B;  3U60 F;  2IO4 A;  3LX2 A;  2IO4 B;  1VYM A;  1B77 A;  5H0T A;  2OD8 A;  1UD9 A;  1AXC A;  2ZVW A;  3K4X A;  1RXZ A;  2HIK A;  2HIK B;  1VYJ A;  3WGW A;  3A1J C;  3V62 B;  1RWZ A;  2IX2 A;  3A2F B;  2AVT A;  2AWA A;  1IZ5 A;  2NTI B;  5JNE D;  3AIZ C;  4L60 A;  5IXA A;  3TBL A;  1ISQ A;  4L6P A;  1U76 A;  4YHR A;  1UL1 A;  3GGR B;  3P83 A;  5IWD A;  4TR6 A;  3P91 A;  2HII C;  3IFV A; 
#chains in the Genus database with same CATH homology
 5A6D A;  1T6L A;  2NTI A;  2IZO B;  3G65 C;  1GE8 A;  1SXJ F;  2ZVL A;  3GPN A;  3U5Z F;  3FDS D;  1CZD A;  4CS5 A;  4D2G A;  2HIK C;  2ZVK A;  3GPM A;  2IX2 C;  5E0U A;  3GGR A;  1IZ4 A;  3V60 B;  3AIX A;  5DAI A;  3AIX B;  2Z0L A;  5E0V A;  3LX1 A;  5E0T A;  1DML A;  4RJF A;  3FDS C;  1PLR A;  3P87 A;  2HII A;  3HI8 A;  2HII B;  3U61 F;  3A1J A;  3A1J B;  4ZTD A;  3V61 B;  1PLQ A;  5CFK A;  3AIZ A;  3F1W A;  3I2M X;  2ZVV A;  3VKX A;  2NTI C;  2IZO C;  1U7B A;  1RXM A;  2IX2 B;  1YYP A;  5IY4 A;  2ZVM A;  5DA7 A;  3HSL X;  4HK1 A;  3GGR C;  5HAC A;  5B7O A;  2IJX A;  1B8H A;  5AUJ A;  1W60 A;  3G65 A;  3G65 B;  3U60 F;  2IO4 A;  3LX2 A;  2IO4 B;  1VYM A;  1B77 A;  5H0T A;  2OD8 A;  1UD9 A;  1AXC A;  2ZVW A;  3K4X A;  1RXZ A;  2HIK A;  2HIK B;  1VYJ A;  3WGW A;  3A1J C;  3V62 B;  1RWZ A;  2IX2 A;  3A2F B;  2AVT A;  2AWA A;  1IZ5 A;  2NTI B;  5JNE D;  3AIZ C;  4L60 A;  5IXA A;  3TBL A;  1ISQ A;  4L6P A;  1U76 A;  4YHR A;  1UL1 A;  3GGR B;  3P83 A;  5IWD A;  4TR6 A;  3P91 A;  2HII C;  3IFV A; 
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