1VYJA

Structural and biochemical studies of human pcna complexes provide the basis for association with cdk/cyclin and rationale for inhibitor design
Total Genus 64

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
257
structure length
257
Chain Sequence
MFEARLVQGSILKKVLEALKDLINEACWDISSSGVNLQSMDSSHVSLVQLTLRSEGFDTYRCDRNLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDLDVEQLGIPEQEYSCVVKMPSGEFARICRDLSHIGDAVVISCAKDGVKFSASGELGNGNIKLSQTSNVDKEEEAVTIEMNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIED

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-6)TVIII3 (57-60)TVIII1 (6-9)AH1 (9-18)S17 (245-251)TI1 (19-22)TI2 (20-23)AH2 (72-80)TVIII2 (21-24)S2 (25-31)TI3 (31-34)S3 (34-40)TI4 (41-44)S4 (46-53)AH4 (209-215)3H1 (54-56)TII1 (241-244)TVIII4 (62-65)S5 (66-71)TI5 (83-86)S7 (98-104)TIV7 (199-202)TVIII5 (133-136)S15 (224-230)AH3 (141-154)S9 (135-140)O2 (135-162)TIV4 (185-188)TIV6 (191-194)S14 (203-208)S16 (233-241)3H2 (216-221)O1 (108-110)TIV2 (105-108)S13 (196-199)TI6 (163-166)S6 (87-92)S10 (157-163)S11 (166-173)S8 (111-117)S12 (176-183)Updating...
connected with : NaN
molecule tags Dna binding protein
source organism Homo sapiens
publication title Structural and Biochemical Studies of Human Proliferating Cell Nuclear Antigen Complexes Provide a Rationale for Cyclin Association and Inhibitor Design
pubmed doi rcsb
molecule keywords PROLIFERATING CELL NUCLEAR ANTIGEN
total genus 64
structure length 257
sequence length 257
chains with identical sequence C, E, G, I, K
ec nomenclature
pdb deposition date 2004-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 1vyjA00
3U5ZF 4D2GA 1GE8A 5H0TA 5E0VA 3G65C 3FDSD 2NTIA 3P91A 1DMLA 3IFVA 2IX2B 3V62B 2IX2A 2ZVKA 1RXMA 3GPMA 4CS5A 1RWZA 3G65B 2AWAA 3F1WA 3VKXA 3A2FB 4TR6A 3P87A 3P83A 3K4XA 3A1JC 2OD8A 2IO4B 3AIZC 5B7OA 3LX2A 3HI8A 4RJFA 5A6DA 1AXCA 3A1JB 2HIIC 3A1JA 4L6PA 5JNED 5HACA 5IWDA 3G65A 1SXJF 3HSLX 4ZTDA 5AUJA 2HIKC 3GPNA 3AIZA 1CZDA 2IZOC 2HIIB 2HIIA 3I2MX 3V61B 5IXAA 1VYMA 1YYPA 1B8HA 2HIKB 3FDSC 1IZ4A 2ZVVA 1ISQA 1UD9A 2IO4A 2IZOB 5E0TA 4L60A 5DAIA 2Z0LA 1T6LA 5DA7A 2NTIC 1U7BA 2AVTA 3GGRC 1W60A 2ZVWA 5CFKA 1PLRA 2IX2C 3AIXB 5IY4A 3WGWA 3AIXA 1UL1A 1RXZA 2NTIB 3GGRB 3GGRA 2IJXA 1B77A 2HIKA 5E0UA 3V60B 3U61F 3LX1A 2ZVLA 3TBLA 4HK1A 4YHRA 1PLQA 1U76A 3U60F 1IZ5A 2ZVMA 1VYJA
chains in the Genus database with same CATH superfamily
3U5ZF 4D2GA 1GE8A 5H0TA 5E0VA 3G65C 3FDSD 2NTIA 3P91A 1DMLA 3IFVA 2IX2B 3V62B 2IX2A 2ZVKA 1RXMA 3GPMA 4CS5A 1RWZA 3G65B 2AWAA 3F1WA 3VKXA 3A2FB 4TR6A 3P87A 3P83A 3K4XA 3A1JC 2OD8A 2IO4B 3AIZC 5B7OA 3LX2A 3HI8A 4RJFA 5A6DA 1AXCA 3A1JB 2HIIC 3A1JA 4L6PA 5JNED 5HACA 5IWDA 3G65A 1SXJF 3HSLX 4ZTDA 5AUJA 2HIKC 3GPNA 3AIZA 1CZDA 2IZOC 2HIIB 2HIIA 3I2MX 3V61B 5IXAA 1VYMA 1YYPA 1B8HA 2HIKB 3FDSC 1IZ4A 2ZVVA 1ISQA 1UD9A 2IO4A 2IZOB 5E0TA 4L60A 5DAIA 2Z0LA 1T6LA 5DA7A 2NTIC 1U7BA 2AVTA 3GGRC 1W60A 2ZVWA 5CFKA 1PLRA 2IX2C 3AIXB 5IY4A 3WGWA 3AIXA 1UL1A 1RXZA 2NTIB 3GGRB 3GGRA 2IJXA 1B77A 2HIKA 5E0UA 3V60B 3U61F 3LX1A 2ZVLA 3TBLA 4HK1A 4YHRA 1PLQA 1U76A 3U60F 1IZ5A 2ZVMA 1VYJA
chains in the Genus database with same CATH topology
3U5ZF 4D2GA 1GE8A 5H0TA 5E0VA 3G65C 3FDSD 2NTIA 3P91A 1DMLA 3IFVA 2IX2B 3V62B 2IX2A 2ZVKA 1RXMA 3GPMA 4CS5A 1RWZA 3G65B 2AWAA 3F1WA 3VKXA 3A2FB 4TR6A 3P87A 3P83A 3K4XA 3A1JC 2OD8A 2IO4B 3AIZC 5B7OA 3LX2A 3HI8A 4RJFA 5A6DA 1AXCA 3A1JB 2HIIC 3A1JA 4L6PA 5JNED 5HACA 5IWDA 3G65A 1SXJF 3HSLX 4ZTDA 5AUJA 2HIKC 3GPNA 3AIZA 1CZDA 2IZOC 2HIIB 2HIIA 3I2MX 3V61B 5IXAA 1VYMA 1YYPA 1B8HA 2HIKB 3FDSC 1IZ4A 2ZVVA 1ISQA 1UD9A 2IO4A 2IZOB 5E0TA 4L60A 5DAIA 2Z0LA 1T6LA 5DA7A 2NTIC 1U7BA 2AVTA 3GGRC 1W60A 2ZVWA 5CFKA 1PLRA 2IX2C 3AIXB 5IY4A 3WGWA 3AIXA 1UL1A 1RXZA 2NTIB 3GGRB 3GGRA 2IJXA 1B77A 2HIKA 5E0UA 3V60B 3U61F 3LX1A 2ZVLA 3TBLA 4HK1A 4YHRA 1PLQA 1U76A 3U60F 1IZ5A 2ZVMA 1VYJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U5Z F;  4D2G A;  1GE8 A;  5H0T A;  5E0V A;  3G65 C;  3FDS D;  2NTI A;  3P91 A;  1DML A;  3IFV A;  2IX2 B;  3V62 B;  2IX2 A;  2ZVK A;  1RXM A;  3GPM A;  4CS5 A;  1RWZ A;  3G65 B;  2AWA A;  3F1W A;  3VKX A;  3A2F B;  4TR6 A;  3P87 A;  3P83 A;  3K4X A;  3A1J C;  2OD8 A;  2IO4 B;  3AIZ C;  5B7O A;  3LX2 A;  3HI8 A;  4RJF A;  5A6D A;  1AXC A;  3A1J B;  2HII C;  3A1J A;  4L6P A;  5JNE D;  5HAC A;  5IWD A;  3G65 A;  1SXJ F;  3HSL X;  4ZTD A;  5AUJ A;  2HIK C;  3GPN A;  3AIZ A;  1CZD A;  2IZO C;  2HII B;  2HII A;  3I2M X;  3V61 B;  5IXA A;  1VYM A;  1YYP A;  1B8H A;  2HIK B;  3FDS C;  1IZ4 A;  2ZVV A;  1ISQ A;  1UD9 A;  2IO4 A;  2IZO B;  5E0T A;  4L60 A;  5DAI A;  2Z0L A;  1T6L A;  5DA7 A;  2NTI C;  1U7B A;  2AVT A;  3GGR C;  1W60 A;  2ZVW A;  5CFK A;  1PLR A;  2IX2 C;  3AIX B;  5IY4 A;  3WGW A;  3AIX A;  1UL1 A;  1RXZ A;  2NTI B;  3GGR B;  3GGR A;  2IJX A;  1B77 A;  2HIK A;  5E0U A;  3V60 B;  3U61 F;  3LX1 A;  2ZVL A;  3TBL A;  4HK1 A;  4YHR A;  1PLQ A;  1U76 A;  3U60 F;  1IZ5 A;  2ZVM A;  1VYJ A; 
#chains in the Genus database with same CATH topology
 3U5Z F;  4D2G A;  1GE8 A;  5H0T A;  5E0V A;  3G65 C;  3FDS D;  2NTI A;  3P91 A;  1DML A;  3IFV A;  2IX2 B;  3V62 B;  2IX2 A;  2ZVK A;  1RXM A;  3GPM A;  4CS5 A;  1RWZ A;  3G65 B;  2AWA A;  3F1W A;  3VKX A;  3A2F B;  4TR6 A;  3P87 A;  3P83 A;  3K4X A;  3A1J C;  2OD8 A;  2IO4 B;  3AIZ C;  5B7O A;  3LX2 A;  3HI8 A;  4RJF A;  5A6D A;  1AXC A;  3A1J B;  2HII C;  3A1J A;  4L6P A;  5JNE D;  5HAC A;  5IWD A;  3G65 A;  1SXJ F;  3HSL X;  4ZTD A;  5AUJ A;  2HIK C;  3GPN A;  3AIZ A;  1CZD A;  2IZO C;  2HII B;  2HII A;  3I2M X;  3V61 B;  5IXA A;  1VYM A;  1YYP A;  1B8H A;  2HIK B;  3FDS C;  1IZ4 A;  2ZVV A;  1ISQ A;  1UD9 A;  2IO4 A;  2IZO B;  5E0T A;  4L60 A;  5DAI A;  2Z0L A;  1T6L A;  5DA7 A;  2NTI C;  1U7B A;  2AVT A;  3GGR C;  1W60 A;  2ZVW A;  5CFK A;  1PLR A;  2IX2 C;  3AIX B;  5IY4 A;  3WGW A;  3AIX A;  1UL1 A;  1RXZ A;  2NTI B;  3GGR B;  3GGR A;  2IJX A;  1B77 A;  2HIK A;  5E0U A;  3V60 B;  3U61 F;  3LX1 A;  2ZVL A;  3TBL A;  4HK1 A;  4YHR A;  1PLQ A;  1U76 A;  3U60 F;  1IZ5 A;  2ZVM A;  1VYJ A; 
#chains in the Genus database with same CATH homology
 3U5Z F;  4D2G A;  1GE8 A;  5H0T A;  5E0V A;  3G65 C;  3FDS D;  2NTI A;  3P91 A;  1DML A;  3IFV A;  2IX2 B;  3V62 B;  2IX2 A;  2ZVK A;  1RXM A;  3GPM A;  4CS5 A;  1RWZ A;  3G65 B;  2AWA A;  3F1W A;  3VKX A;  3A2F B;  4TR6 A;  3P87 A;  3P83 A;  3K4X A;  3A1J C;  2OD8 A;  2IO4 B;  3AIZ C;  5B7O A;  3LX2 A;  3HI8 A;  4RJF A;  5A6D A;  1AXC A;  3A1J B;  2HII C;  3A1J A;  4L6P A;  5JNE D;  5HAC A;  5IWD A;  3G65 A;  1SXJ F;  3HSL X;  4ZTD A;  5AUJ A;  2HIK C;  3GPN A;  3AIZ A;  1CZD A;  2IZO C;  2HII B;  2HII A;  3I2M X;  3V61 B;  5IXA A;  1VYM A;  1YYP A;  1B8H A;  2HIK B;  3FDS C;  1IZ4 A;  2ZVV A;  1ISQ A;  1UD9 A;  2IO4 A;  2IZO B;  5E0T A;  4L60 A;  5DAI A;  2Z0L A;  1T6L A;  5DA7 A;  2NTI C;  1U7B A;  2AVT A;  3GGR C;  1W60 A;  2ZVW A;  5CFK A;  1PLR A;  2IX2 C;  3AIX B;  5IY4 A;  3WGW A;  3AIX A;  1UL1 A;  1RXZ A;  2NTI B;  3GGR B;  3GGR A;  2IJX A;  1B77 A;  2HIK A;  5E0U A;  3V60 B;  3U61 F;  3LX1 A;  2ZVL A;  3TBL A;  4HK1 A;  4YHR A;  1PLQ A;  1U76 A;  3U60 F;  1IZ5 A;  2ZVM A;  1VYJ A; 
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