1UD9A

Crystal structure of proliferating cell nuclear antigen (pcna) homolog from sulfolobus tokodaii
Total Genus 58
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
58
sequence length
245
structure length
242
Chain Sequence
AHIVYDDVRDLKAIIQALLKLVDEALFDIKPEGIQLVAIDKAHISLIKIELPKEMFKEYDVPEEFKFGFNTQYMSKLLKAAKRKEEIIIDADSPEVVKLTLSGALNRVFNVNNIEVLPPEVPLEFDIKATINASGLKNAIGEIAEVADTLLISGNEEKVVVKGEGENKVEVEFSKDTGSLADIEFNKESSSAYDVEYLNDIISLTKLSDYVKVAFADQKPMQLEFNMEGGGKVTYLLAPKLS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of Proliferating Cell Nuclear Antigen (PCNA) Homolog From Sulfolobus tokodaii
rcsb
molecule tags Dna binding protein
source organism Sulfolobus tokodaii
molecule keywords DNA polymerase sliding clamp A
total genus 58
structure length 242
sequence length 245
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2003-04-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 1ud9A00
1VYJA 5DAIA 3HSLX 2HIIC 3HI8A 5IY4A 1GE8A 2IO4A 5JNED 2IX2A 4CS5A 2IZOC 3AIZA 1U76A 4L6PA 2HIKA 2ZVLA 2IX2B 5IXAA 1W60A 2HIKB 3LX1A 3IFVA 3P87A 3K4XA 3GPNA 1PLQA 1DMLA 1IZ4A 3G65A 1CZDA 5AUJA 3AIXA 2NTIC 2HIIB 3V61B 1RXZA 3G65B 5E0VA 2IZOB 3AIXB 4RJFA 3TBLA 2ZVMA 5B7OA 2ZVWA 5A6DA 3VKXA 1T6LA 1IZ5A 3V60B 4HK1A 4L60A 2HIIA 2NTIA 2AVTA 3GPMA 3P83A 1B8HA 2ZVKA 3A2FB 5CFKA 2NTIB 1VYMA 2Z0LA 5E0UA 3A1JC 3F1WA 1U7BA 3GGRC 1YYPA 3U5ZF 3FDSD 5DA7A 2OD8A 1ISQA 3LX2A 1PLRA 1B77A 3I2MX 4YHRA 2ZVVA 3U61F 1AXCA 1UD9A 4TR6A 3WGWA 5IWDA 3A1JA 1UL1A 4D2GA 1SXJF 3GGRA 2IJXA 5HACA 3G65C 1RWZA 3P91A 3V62B 5E0TA 3FDSC 3A1JB 3GGRB 4ZTDA 2IO4B 2IX2C 3AIZC 5H0TA 2HIKC 3U60F 2AWAA 1RXMA
chains in the Genus database with same CATH superfamily
1VYJA 5DAIA 3HSLX 2HIIC 3HI8A 5IY4A 1GE8A 2IO4A 5JNED 2IX2A 4CS5A 2IZOC 3AIZA 1U76A 4L6PA 2HIKA 2ZVLA 2IX2B 5IXAA 1W60A 2HIKB 3LX1A 3IFVA 3P87A 3K4XA 3GPNA 1PLQA 1DMLA 1IZ4A 3G65A 1CZDA 5AUJA 3AIXA 2NTIC 2HIIB 3V61B 1RXZA 3G65B 5E0VA 2IZOB 3AIXB 4RJFA 3TBLA 2ZVMA 5B7OA 2ZVWA 5A6DA 3VKXA 1T6LA 1IZ5A 3V60B 4HK1A 4L60A 2HIIA 2NTIA 2AVTA 3GPMA 3P83A 1B8HA 2ZVKA 3A2FB 5CFKA 2NTIB 1VYMA 2Z0LA 5E0UA 3A1JC 3F1WA 1U7BA 3GGRC 1YYPA 3U5ZF 3FDSD 5DA7A 2OD8A 1ISQA 3LX2A 1PLRA 1B77A 3I2MX 4YHRA 2ZVVA 3U61F 1AXCA 1UD9A 4TR6A 3WGWA 5IWDA 3A1JA 1UL1A 4D2GA 1SXJF 3GGRA 2IJXA 5HACA 3G65C 1RWZA 3P91A 3V62B 5E0TA 3FDSC 3A1JB 3GGRB 4ZTDA 2IO4B 2IX2C 3AIZC 5H0TA 2HIKC 3U60F 2AWAA 1RXMA
chains in the Genus database with same CATH topology
1VYJA 5DAIA 3HSLX 2HIIC 3HI8A 5IY4A 1GE8A 2IO4A 5JNED 2IX2A 4CS5A 2IZOC 3AIZA 1U76A 4L6PA 2HIKA 2ZVLA 2IX2B 5IXAA 1W60A 2HIKB 3LX1A 3IFVA 3P87A 3K4XA 3GPNA 1PLQA 1DMLA 1IZ4A 3G65A 1CZDA 5AUJA 3AIXA 2NTIC 2HIIB 3V61B 1RXZA 3G65B 5E0VA 2IZOB 3AIXB 4RJFA 3TBLA 2ZVMA 5B7OA 2ZVWA 5A6DA 3VKXA 1T6LA 1IZ5A 3V60B 4HK1A 4L60A 2HIIA 2NTIA 2AVTA 3GPMA 3P83A 1B8HA 2ZVKA 3A2FB 5CFKA 2NTIB 1VYMA 2Z0LA 5E0UA 3A1JC 3F1WA 1U7BA 3GGRC 1YYPA 3U5ZF 3FDSD 5DA7A 2OD8A 1ISQA 3LX2A 1PLRA 1B77A 3I2MX 4YHRA 2ZVVA 3U61F 1AXCA 1UD9A 4TR6A 3WGWA 5IWDA 3A1JA 1UL1A 4D2GA 1SXJF 3GGRA 2IJXA 5HACA 3G65C 1RWZA 3P91A 3V62B 5E0TA 3FDSC 3A1JB 3GGRB 4ZTDA 2IO4B 2IX2C 3AIZC 5H0TA 2HIKC 3U60F 2AWAA 1RXMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VYJ A;  5DAI A;  3HSL X;  2HII C;  3HI8 A;  5IY4 A;  1GE8 A;  2IO4 A;  5JNE D;  2IX2 A;  4CS5 A;  2IZO C;  3AIZ A;  1U76 A;  4L6P A;  2HIK A;  2ZVL A;  2IX2 B;  5IXA A;  1W60 A;  2HIK B;  3LX1 A;  3IFV A;  3P87 A;  3K4X A;  3GPN A;  1PLQ A;  1DML A;  1IZ4 A;  3G65 A;  1CZD A;  5AUJ A;  3AIX A;  2NTI C;  2HII B;  3V61 B;  1RXZ A;  3G65 B;  5E0V A;  2IZO B;  3AIX B;  4RJF A;  3TBL A;  2ZVM A;  5B7O A;  2ZVW A;  5A6D A;  3VKX A;  1T6L A;  1IZ5 A;  3V60 B;  4HK1 A;  4L60 A;  2HII A;  2NTI A;  2AVT A;  3GPM A;  3P83 A;  1B8H A;  2ZVK A;  3A2F B;  5CFK A;  2NTI B;  1VYM A;  2Z0L A;  5E0U A;  3A1J C;  3F1W A;  1U7B A;  3GGR C;  1YYP A;  3U5Z F;  3FDS D;  5DA7 A;  2OD8 A;  1ISQ A;  3LX2 A;  1PLR A;  1B77 A;  3I2M X;  4YHR A;  2ZVV A;  3U61 F;  1AXC A;  1UD9 A;  4TR6 A;  3WGW A;  5IWD A;  3A1J A;  1UL1 A;  4D2G A;  1SXJ F;  3GGR A;  2IJX A;  5HAC A;  3G65 C;  1RWZ A;  3P91 A;  3V62 B;  5E0T A;  3FDS C;  3A1J B;  3GGR B;  4ZTD A;  2IO4 B;  2IX2 C;  3AIZ C;  5H0T A;  2HIK C;  3U60 F;  2AWA A;  1RXM A; 
#chains in the Genus database with same CATH topology
 1VYJ A;  5DAI A;  3HSL X;  2HII C;  3HI8 A;  5IY4 A;  1GE8 A;  2IO4 A;  5JNE D;  2IX2 A;  4CS5 A;  2IZO C;  3AIZ A;  1U76 A;  4L6P A;  2HIK A;  2ZVL A;  2IX2 B;  5IXA A;  1W60 A;  2HIK B;  3LX1 A;  3IFV A;  3P87 A;  3K4X A;  3GPN A;  1PLQ A;  1DML A;  1IZ4 A;  3G65 A;  1CZD A;  5AUJ A;  3AIX A;  2NTI C;  2HII B;  3V61 B;  1RXZ A;  3G65 B;  5E0V A;  2IZO B;  3AIX B;  4RJF A;  3TBL A;  2ZVM A;  5B7O A;  2ZVW A;  5A6D A;  3VKX A;  1T6L A;  1IZ5 A;  3V60 B;  4HK1 A;  4L60 A;  2HII A;  2NTI A;  2AVT A;  3GPM A;  3P83 A;  1B8H A;  2ZVK A;  3A2F B;  5CFK A;  2NTI B;  1VYM A;  2Z0L A;  5E0U A;  3A1J C;  3F1W A;  1U7B A;  3GGR C;  1YYP A;  3U5Z F;  3FDS D;  5DA7 A;  2OD8 A;  1ISQ A;  3LX2 A;  1PLR A;  1B77 A;  3I2M X;  4YHR A;  2ZVV A;  3U61 F;  1AXC A;  1UD9 A;  4TR6 A;  3WGW A;  5IWD A;  3A1J A;  1UL1 A;  4D2G A;  1SXJ F;  3GGR A;  2IJX A;  5HAC A;  3G65 C;  1RWZ A;  3P91 A;  3V62 B;  5E0T A;  3FDS C;  3A1J B;  3GGR B;  4ZTD A;  2IO4 B;  2IX2 C;  3AIZ C;  5H0T A;  2HIK C;  3U60 F;  2AWA A;  1RXM A; 
#chains in the Genus database with same CATH homology
 1VYJ A;  5DAI A;  3HSL X;  2HII C;  3HI8 A;  5IY4 A;  1GE8 A;  2IO4 A;  5JNE D;  2IX2 A;  4CS5 A;  2IZO C;  3AIZ A;  1U76 A;  4L6P A;  2HIK A;  2ZVL A;  2IX2 B;  5IXA A;  1W60 A;  2HIK B;  3LX1 A;  3IFV A;  3P87 A;  3K4X A;  3GPN A;  1PLQ A;  1DML A;  1IZ4 A;  3G65 A;  1CZD A;  5AUJ A;  3AIX A;  2NTI C;  2HII B;  3V61 B;  1RXZ A;  3G65 B;  5E0V A;  2IZO B;  3AIX B;  4RJF A;  3TBL A;  2ZVM A;  5B7O A;  2ZVW A;  5A6D A;  3VKX A;  1T6L A;  1IZ5 A;  3V60 B;  4HK1 A;  4L60 A;  2HII A;  2NTI A;  2AVT A;  3GPM A;  3P83 A;  1B8H A;  2ZVK A;  3A2F B;  5CFK A;  2NTI B;  1VYM A;  2Z0L A;  5E0U A;  3A1J C;  3F1W A;  1U7B A;  3GGR C;  1YYP A;  3U5Z F;  3FDS D;  5DA7 A;  2OD8 A;  1ISQ A;  3LX2 A;  1PLR A;  1B77 A;  3I2M X;  4YHR A;  2ZVV A;  3U61 F;  1AXC A;  1UD9 A;  4TR6 A;  3WGW A;  5IWD A;  3A1J A;  1UL1 A;  4D2G A;  1SXJ F;  3GGR A;  2IJX A;  5HAC A;  3G65 C;  1RWZ A;  3P91 A;  3V62 B;  5E0T A;  3FDS C;  3A1J B;  3GGR B;  4ZTD A;  2IO4 B;  2IX2 C;  3AIZ C;  5H0T A;  2HIK C;  3U60 F;  2AWA A;  1RXM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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