2HIKA

Heterotrimeric pcna sliding clamp
Total Genus 52

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
52
sequence length
249
structure length
249
Chain Sequence
FKIVYPNAKDFFSFINSITNVTDSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSVKKILSKASSKKATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLTEPKVNLAVNFTTDESVLNVIAADVTLVGEEMRISTEEDKIKIEAGEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGENLPMKIDVEAVSGGHMIFWIAPRLL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS7 (88-93)TVIII2 (57-60)S1 (3-6)O1 (82-84)TVIII1 (6-9)TIV2 (84-87)AH1 (9-19)AH4 (205-212)AH2 (72-81)TI1 (20-23)TIV9 (201-205)S6 (66-71)S2 (25-30)TI2 (31-34)TI3 (41-44)TI7 (235-238)S4 (52-53)TIV1 (62-65)S9 (110-121)TI4 (94-97)S8 (97-103)TI5 (105-108)TIV3 (104-107)TVIII3 (132-135)S14 (187-189)TIV7 (183-186)S10 (134-138)TIV6 (181-185)TII2 (212-215)AH3 (140-151)S15 (197-200)TI6 (151-154)S11 (159-162)S13 (177-181)TII1 (162-165)TIV4 (172-175)TVIII5 (192-195)S16 (219-223)3H1 (54-56)S3 (34-38)S12 (165-170)TII3 (224-227)Updating...
connected with : NaN
molecule tags Replication
source organism Sulfolobus solfataricus
publication title A Flexible Interface between DNA Ligase and PCNA Supports Conformational Switching and Efficient Ligation of DNA.
pubmed doi rcsb
molecule keywords PCNA1 (SSO0397)
total genus 52
structure length 249
sequence length 249
chains with identical sequence L, X
ec nomenclature
pdb deposition date 2006-06-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 2hikA01
5IWDA 2NTIC 3AIZA 5IXAA 2IX2B 2ZVMA 2NTIA 5DAIA 1YYPA 1RXZA 4CS5A 5E0TA 1B8HA 3A2FB 2ZVLA 2IZOB 1DMLA 1PLRA 4TR6A 3F1WA 5DA7A 3WGWA 2IX2C 3P83A 5A6DA 2HIIA 3GPMA 3K4XA 1PLQA 1RWZA 3LX1A 2IO4B 1UL1A 3U61F 2IX2A 2HIIC 5HACA 3HI8A 3AIXA 3TBLA 1ISQA 3GGRB 2IZOC 4L6PA 3IFVA 3V62B 1UD9A 3P91A 1U7BA 2HIKC 3A1JB 4ZTDA 2HIKB 1GE8A 3V60B 5B7OA 1VYMA 2ZVKA 2Z0LA 3VKXA 3LX2A 5CFKA 1B77A 3FDSC 5IY4A 1T6LA 1IZ5A 3HSLX 3FDSD 1U76A 2AWAA 3I2MX 4HK1A 5E0UA 3GGRC 1CZDA 4YHRA 2IO4A 2ZVWA 3G65B 1SXJF 5AUJA 1RXMA 1VYJA 1AXCA 2OD8A 3GGRA 2AVTA 3U5ZF 5E0VA 3GPNA 3A1JC 2ZVVA 2HIIB 3A1JA 5JNED 1W60A 2HIKA 2NTIB 4D2GA 3AIXB 4RJFA 5H0TA 3U60F 4L60A 3G65C 3V61B 3G65A 1IZ4A 3P87A 2IJXA 3AIZC
chains in the Genus database with same CATH superfamily
5IWDA 2NTIC 3AIZA 5IXAA 2IX2B 2ZVMA 2NTIA 5DAIA 1YYPA 1RXZA 4CS5A 5E0TA 1B8HA 3A2FB 2ZVLA 2IZOB 1DMLA 1PLRA 4TR6A 3F1WA 5DA7A 3WGWA 2IX2C 3P83A 5A6DA 2HIIA 3GPMA 3K4XA 1PLQA 1RWZA 3LX1A 2IO4B 1UL1A 3U61F 2IX2A 2HIIC 5HACA 3HI8A 3AIXA 3TBLA 1ISQA 3GGRB 2IZOC 4L6PA 3IFVA 3V62B 1UD9A 3P91A 1U7BA 2HIKC 3A1JB 4ZTDA 2HIKB 1GE8A 3V60B 5B7OA 1VYMA 2ZVKA 2Z0LA 3VKXA 3LX2A 5CFKA 1B77A 3FDSC 5IY4A 1T6LA 1IZ5A 3HSLX 3FDSD 1U76A 2AWAA 3I2MX 4HK1A 5E0UA 3GGRC 1CZDA 4YHRA 2IO4A 2ZVWA 3G65B 1SXJF 5AUJA 1RXMA 1VYJA 1AXCA 2OD8A 3GGRA 2AVTA 3U5ZF 5E0VA 3GPNA 3A1JC 2ZVVA 2HIIB 3A1JA 5JNED 1W60A 2HIKA 2NTIB 4D2GA 3AIXB 4RJFA 5H0TA 3U60F 4L60A 3G65C 3V61B 3G65A 1IZ4A 3P87A 2IJXA 3AIZC
chains in the Genus database with same CATH topology
5IWDA 2NTIC 3AIZA 5IXAA 2IX2B 2ZVMA 2NTIA 5DAIA 1YYPA 1RXZA 4CS5A 5E0TA 1B8HA 3A2FB 2ZVLA 2IZOB 1DMLA 1PLRA 4TR6A 3F1WA 5DA7A 3WGWA 2IX2C 3P83A 5A6DA 2HIIA 3GPMA 3K4XA 1PLQA 1RWZA 3LX1A 2IO4B 1UL1A 3U61F 2IX2A 2HIIC 5HACA 3HI8A 3AIXA 3TBLA 1ISQA 3GGRB 2IZOC 4L6PA 3IFVA 3V62B 1UD9A 3P91A 1U7BA 2HIKC 3A1JB 4ZTDA 2HIKB 1GE8A 3V60B 5B7OA 1VYMA 2ZVKA 2Z0LA 3VKXA 3LX2A 5CFKA 1B77A 3FDSC 5IY4A 1T6LA 1IZ5A 3HSLX 3FDSD 1U76A 2AWAA 3I2MX 4HK1A 5E0UA 3GGRC 1CZDA 4YHRA 2IO4A 2ZVWA 3G65B 1SXJF 5AUJA 1RXMA 1VYJA 1AXCA 2OD8A 3GGRA 2AVTA 3U5ZF 5E0VA 3GPNA 3A1JC 2ZVVA 2HIIB 3A1JA 5JNED 1W60A 2HIKA 2NTIB 4D2GA 3AIXB 4RJFA 5H0TA 3U60F 4L60A 3G65C 3V61B 3G65A 1IZ4A 3P87A 2IJXA 3AIZC
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5IWD A;  2NTI C;  3AIZ A;  5IXA A;  2IX2 B;  2ZVM A;  2NTI A;  5DAI A;  1YYP A;  1RXZ A;  4CS5 A;  5E0T A;  1B8H A;  3A2F B;  2ZVL A;  2IZO B;  1DML A;  1PLR A;  4TR6 A;  3F1W A;  5DA7 A;  3WGW A;  2IX2 C;  3P83 A;  5A6D A;  2HII A;  3GPM A;  3K4X A;  1PLQ A;  1RWZ A;  3LX1 A;  2IO4 B;  1UL1 A;  3U61 F;  2IX2 A;  2HII C;  5HAC A;  3HI8 A;  3AIX A;  3TBL A;  1ISQ A;  3GGR B;  2IZO C;  4L6P A;  3IFV A;  3V62 B;  1UD9 A;  3P91 A;  1U7B A;  2HIK C;  3A1J B;  4ZTD A;  2HIK B;  1GE8 A;  3V60 B;  5B7O A;  1VYM A;  2ZVK A;  2Z0L A;  3VKX A;  3LX2 A;  5CFK A;  1B77 A;  3FDS C;  5IY4 A;  1T6L A;  1IZ5 A;  3HSL X;  3FDS D;  1U76 A;  2AWA A;  3I2M X;  4HK1 A;  5E0U A;  3GGR C;  1CZD A;  4YHR A;  2IO4 A;  2ZVW A;  3G65 B;  1SXJ F;  5AUJ A;  1RXM A;  1VYJ A;  1AXC A;  2OD8 A;  3GGR A;  2AVT A;  3U5Z F;  5E0V A;  3GPN A;  3A1J C;  2ZVV A;  2HII B;  3A1J A;  5JNE D;  1W60 A;  2HIK A;  2NTI B;  4D2G A;  3AIX B;  4RJF A;  5H0T A;  3U60 F;  4L60 A;  3G65 C;  3V61 B;  3G65 A;  1IZ4 A;  3P87 A;  2IJX A;  3AIZ C; 
#chains in the Genus database with same CATH topology
 5IWD A;  2NTI C;  3AIZ A;  5IXA A;  2IX2 B;  2ZVM A;  2NTI A;  5DAI A;  1YYP A;  1RXZ A;  4CS5 A;  5E0T A;  1B8H A;  3A2F B;  2ZVL A;  2IZO B;  1DML A;  1PLR A;  4TR6 A;  3F1W A;  5DA7 A;  3WGW A;  2IX2 C;  3P83 A;  5A6D A;  2HII A;  3GPM A;  3K4X A;  1PLQ A;  1RWZ A;  3LX1 A;  2IO4 B;  1UL1 A;  3U61 F;  2IX2 A;  2HII C;  5HAC A;  3HI8 A;  3AIX A;  3TBL A;  1ISQ A;  3GGR B;  2IZO C;  4L6P A;  3IFV A;  3V62 B;  1UD9 A;  3P91 A;  1U7B A;  2HIK C;  3A1J B;  4ZTD A;  2HIK B;  1GE8 A;  3V60 B;  5B7O A;  1VYM A;  2ZVK A;  2Z0L A;  3VKX A;  3LX2 A;  5CFK A;  1B77 A;  3FDS C;  5IY4 A;  1T6L A;  1IZ5 A;  3HSL X;  3FDS D;  1U76 A;  2AWA A;  3I2M X;  4HK1 A;  5E0U A;  3GGR C;  1CZD A;  4YHR A;  2IO4 A;  2ZVW A;  3G65 B;  1SXJ F;  5AUJ A;  1RXM A;  1VYJ A;  1AXC A;  2OD8 A;  3GGR A;  2AVT A;  3U5Z F;  5E0V A;  3GPN A;  3A1J C;  2ZVV A;  2HII B;  3A1J A;  5JNE D;  1W60 A;  2HIK A;  2NTI B;  4D2G A;  3AIX B;  4RJF A;  5H0T A;  3U60 F;  4L60 A;  3G65 C;  3V61 B;  3G65 A;  1IZ4 A;  3P87 A;  2IJX A;  3AIZ C; 
#chains in the Genus database with same CATH homology
 5IWD A;  2NTI C;  3AIZ A;  5IXA A;  2IX2 B;  2ZVM A;  2NTI A;  5DAI A;  1YYP A;  1RXZ A;  4CS5 A;  5E0T A;  1B8H A;  3A2F B;  2ZVL A;  2IZO B;  1DML A;  1PLR A;  4TR6 A;  3F1W A;  5DA7 A;  3WGW A;  2IX2 C;  3P83 A;  5A6D A;  2HII A;  3GPM A;  3K4X A;  1PLQ A;  1RWZ A;  3LX1 A;  2IO4 B;  1UL1 A;  3U61 F;  2IX2 A;  2HII C;  5HAC A;  3HI8 A;  3AIX A;  3TBL A;  1ISQ A;  3GGR B;  2IZO C;  4L6P A;  3IFV A;  3V62 B;  1UD9 A;  3P91 A;  1U7B A;  2HIK C;  3A1J B;  4ZTD A;  2HIK B;  1GE8 A;  3V60 B;  5B7O A;  1VYM A;  2ZVK A;  2Z0L A;  3VKX A;  3LX2 A;  5CFK A;  1B77 A;  3FDS C;  5IY4 A;  1T6L A;  1IZ5 A;  3HSL X;  3FDS D;  1U76 A;  2AWA A;  3I2M X;  4HK1 A;  5E0U A;  3GGR C;  1CZD A;  4YHR A;  2IO4 A;  2ZVW A;  3G65 B;  1SXJ F;  5AUJ A;  1RXM A;  1VYJ A;  1AXC A;  2OD8 A;  3GGR A;  2AVT A;  3U5Z F;  5E0V A;  3GPN A;  3A1J C;  2ZVV A;  2HII B;  3A1J A;  5JNE D;  1W60 A;  2HIK A;  2NTI B;  4D2G A;  3AIX B;  4RJF A;  5H0T A;  3U60 F;  4L60 A;  3G65 C;  3V61 B;  3G65 A;  1IZ4 A;  3P87 A;  2IJX A;  3AIZ C; 
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