2IX2 | Genus

Total Genus 61

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	61
sequence length	245
structure length	245
Chain Sequence	MKAKVIDAVSFSYILRTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVNDILKRVLKDDTLILSSNESKLTLTFDGEFTRSFELPLIQVESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPRAD

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 245 atoms

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1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

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245 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Replication
source organism	Sulfolobus solfataricus
publication title	Structure of the Heterotrimeric PCNA from Sulfolobus Solfataricus. pubmed doi rcsb
molecule keywords	DNA POLYMERASE SLIDING CLAMP B
total genus	61
structure length	245
sequence length	245
ec nomenclature
pdb deposition date	2006-07-05

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
B	PF00705	PCNA_N	Proliferating cell nuclear antigen, N-terminal domain
B	PF02747	PCNA_C	Proliferating cell nuclear antigen, C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.70.10.10	Alpha Beta	Box	Proliferating Cell Nuclear Antigen	Proliferating Cell Nuclear Antigen	2ix2B00

3FDSC 5H0TA 3G65C 5AUJA 5CFKA 1U76A 1W60A 5IWDA 2OD8A 3U5ZF 1GE8A 5B7OA 2NTIA 1B77A 2ZVVA 3A1JA 3HI8A 3VKXA 5E0TA 3IFVA 4HK1A 3F1WA 2NTIC 1IZ4A 3AIXA 1RWZA 4D2GA 1UL1A 3A1JC 2IX2B 5DAIA 1RXMA 1U7BA 3V60B 3GPNA 1UD9A 1VYMA 2IO4B 1IZ5A 2AVTA 3P83A 2ZVMA 3G65B 1RXZA 3GPMA 5IXAA 3FDSD 2ZVLA 3K4XA 4CS5A 3GGRA 2NTIB 1DMLA 5HACA 5A6DA 2IZOC 3U61F 3A2FB 3A1JB 3GGRC 3WGWA 3V62B 3TBLA 1AXCA 3I2MX 3AIXB 4TR6A 4RJFA 1ISQA 3P91A 1T6LA 5IY4A 2HIIA 2ZVWA 3P87A 1PLRA 5DA7A 4L6PA 5E0UA 5JNED 1YYPA 2ZVKA 3AIZA 2HIIC 1VYJA 4ZTDA 1SXJF 2IZOB 1PLQA 3GGRB 3U60F 3AIZC 4L60A 2IX2A 2HIKA 1CZDA 2IO4A 3LX2A 2AWAA 2Z0LA 3G65A 2IX2C 2HIKC 1B8HA 2HIKB 4YHRA 5E0VA 3LX1A 3V61B 2HIIB 3HSLX 2IJXA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3FDS C;  5H0T A;  3G65 C;  5AUJ A;  5CFK A;  1U76 A;  1W60 A;  5IWD A;  2OD8 A;  3U5Z F;  1GE8 A;  5B7O A;  2NTI A;  1B77 A;  2ZVV A;  3A1J A;  3HI8 A;  3VKX A;  5E0T A;  3IFV A;  4HK1 A;  3F1W A;  2NTI C;  1IZ4 A;  3AIX A;  1RWZ A;  4D2G A;  1UL1 A;  3A1J C;  2IX2 B;  5DAI A;  1RXM A;  1U7B A;  3V60 B;  3GPN A;  1UD9 A;  1VYM A;  2IO4 B;  1IZ5 A;  2AVT A;  3P83 A;  2ZVM A;  3G65 B;  1RXZ A;  3GPM A;  5IXA A;  3FDS D;  2ZVL A;  3K4X A;  4CS5 A;  3GGR A;  2NTI B;  1DML A;  5HAC A;  5A6D A;  2IZO C;  3U61 F;  3A2F B;  3A1J B;  3GGR C;  3WGW A;  3V62 B;  3TBL A;  1AXC A;  3I2M X;  3AIX B;  4TR6 A;  4RJF A;  1ISQ A;  3P91 A;  1T6L A;  5IY4 A;  2HII A;  2ZVW A;  3P87 A;  1PLR A;  5DA7 A;  4L6P A;  5E0U A;  5JNE D;  1YYP A;  2ZVK A;  3AIZ A;  2HII C;  1VYJ A;  4ZTD A;  1SXJ F;  2IZO B;  1PLQ A;  3GGR B;  3U60 F;  3AIZ C;  4L60 A;  2IX2 A;  2HIK A;  1CZD A;  2IO4 A;  3LX2 A;  2AWA A;  2Z0L A;  3G65 A;  2IX2 C;  2HIK C;  1B8H A;  2HIK B;  4YHR A;  5E0V A;  3LX1 A;  3V61 B;  2HII B;  3HSL X;  2IJX A; 
#chains in the Genus database with same CATH topology
 3FDS C;  5H0T A;  3G65 C;  5AUJ A;  5CFK A;  1U76 A;  1W60 A;  5IWD A;  2OD8 A;  3U5Z F;  1GE8 A;  5B7O A;  2NTI A;  1B77 A;  2ZVV A;  3A1J A;  3HI8 A;  3VKX A;  5E0T A;  3IFV A;  4HK1 A;  3F1W A;  2NTI C;  1IZ4 A;  3AIX A;  1RWZ A;  4D2G A;  1UL1 A;  3A1J C;  2IX2 B;  5DAI A;  1RXM A;  1U7B A;  3V60 B;  3GPN A;  1UD9 A;  1VYM A;  2IO4 B;  1IZ5 A;  2AVT A;  3P83 A;  2ZVM A;  3G65 B;  1RXZ A;  3GPM A;  5IXA A;  3FDS D;  2ZVL A;  3K4X A;  4CS5 A;  3GGR A;  2NTI B;  1DML A;  5HAC A;  5A6D A;  2IZO C;  3U61 F;  3A2F B;  3A1J B;  3GGR C;  3WGW A;  3V62 B;  3TBL A;  1AXC A;  3I2M X;  3AIX B;  4TR6 A;  4RJF A;  1ISQ A;  3P91 A;  1T6L A;  5IY4 A;  2HII A;  2ZVW A;  3P87 A;  1PLR A;  5DA7 A;  4L6P A;  5E0U A;  5JNE D;  1YYP A;  2ZVK A;  3AIZ A;  2HII C;  1VYJ A;  4ZTD A;  1SXJ F;  2IZO B;  1PLQ A;  3GGR B;  3U60 F;  3AIZ C;  4L60 A;  2IX2 A;  2HIK A;  1CZD A;  2IO4 A;  3LX2 A;  2AWA A;  2Z0L A;  3G65 A;  2IX2 C;  2HIK C;  1B8H A;  2HIK B;  4YHR A;  5E0V A;  3LX1 A;  3V61 B;  2HII B;  3HSL X;  2IJX A; 
#chains in the Genus database with same CATH homology
 3FDS C;  5H0T A;  3G65 C;  5AUJ A;  5CFK A;  1U76 A;  1W60 A;  5IWD A;  2OD8 A;  3U5Z F;  1GE8 A;  5B7O A;  2NTI A;  1B77 A;  2ZVV A;  3A1J A;  3HI8 A;  3VKX A;  5E0T A;  3IFV A;  4HK1 A;  3F1W A;  2NTI C;  1IZ4 A;  3AIX A;  1RWZ A;  4D2G A;  1UL1 A;  3A1J C;  2IX2 B;  5DAI A;  1RXM A;  1U7B A;  3V60 B;  3GPN A;  1UD9 A;  1VYM A;  2IO4 B;  1IZ5 A;  2AVT A;  3P83 A;  2ZVM A;  3G65 B;  1RXZ A;  3GPM A;  5IXA A;  3FDS D;  2ZVL A;  3K4X A;  4CS5 A;  3GGR A;  2NTI B;  1DML A;  5HAC A;  5A6D A;  2IZO C;  3U61 F;  3A2F B;  3A1J B;  3GGR C;  3WGW A;  3V62 B;  3TBL A;  1AXC A;  3I2M X;  3AIX B;  4TR6 A;  4RJF A;  1ISQ A;  3P91 A;  1T6L A;  5IY4 A;  2HII A;  2ZVW A;  3P87 A;  1PLR A;  5DA7 A;  4L6P A;  5E0U A;  5JNE D;  1YYP A;  2ZVK A;  3AIZ A;  2HII C;  1VYJ A;  4ZTD A;  1SXJ F;  2IZO B;  1PLQ A;  3GGR B;  3U60 F;  3AIZ C;  4L60 A;  2IX2 A;  2HIK A;  1CZD A;  2IO4 A;  3LX2 A;  2AWA A;  2Z0L A;  3G65 A;  2IX2 C;  2HIK C;  1B8H A;  2HIK B;  4YHR A;  5E0V A;  3LX1 A;  3V61 B;  2HII B;  3HSL X;  2IJX A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2IX2B

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations