2IZOC

Structure of an archaeal pcna1-pcna2-fen1 complex
Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
249
structure length
244
Chain Sequence
MFKIVYPNAKDFFSFINSITNVTDSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSVKKILSKASKATIELTETDSGLKIIIRDGAKSTIYIKAEKGQVEQLTEPKVNLAVNFTTDESVLNVIAADVTLVGEEMRISTEEDKIKIEAGEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGENLPMKIDVEAVSGGHMIFWIAPRL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (3-6)S7 (88-94)EMPTYS17 (227-234)AH1 (9-21)TVIII1 (6-9)TIV1 (21-24)TIV2 (23-26)S6 (66-70)S2 (27-31)S9 (110-121)TI1 (31-34)S5 (59-61)3H1 (54-56)S3 (34-40)S4 (46-53)TI2 (41-44)S18 (240-245)TVIII2 (57-60)AH2 (72-80)O1 (70-72)S8 (97-103)TI3 (94-97)TVIII3 (187-190)TIV7 (183-186)S10 (134-138)TII1 (182-185)AH3 (140-153)AH4 (202-211)TIV5 (171-174)S15 (197-201)TIV9 (192-195)TII'1 (162-165)S14 (189-192)S11 (156-162)S13 (176-182)S12 (165-171)S16 (219-224)TII2 (224-227)TI4 (235-238)TIV3 (103-109)Updating...
connected with : NaN
molecule tags Hydrolase
source organism Sulfolobus solfataricus
publication title Structure of an Archaeal PCNA1-PCNA2-Fen1 Complex: Elucidating PCNA Subunit and Client Enzyme Specificity.
pubmed doi rcsb
molecule keywords FLAP STRUCTURE-SPECIFIC ENDONUCLEASE
total genus 56
structure length 244
sequence length 249
ec nomenclature
pdb deposition date 2006-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 2izoC01
3P83A 2IJXA 5DA7A 5CFKA 3WGWA 3G65B 2HIIA 3A1JC 5HACA 3I2MX 5DAIA 4HK1A 1IZ4A 5IY4A 3G65C 2Z0LA 1UL1A 2ZVLA 2HIIC 3LX1A 4YHRA 1DMLA 1RXZA 3HSLX 3P91A 3A1JA 1PLQA 1VYMA 4TR6A 5E0VA 1SXJF 2NTIB 3G65A 4D2GA 3V60B 1CZDA 2IZOC 5E0UA 1T6LA 1PLRA 4CS5A 3GGRB 1U7BA 5JNED 1B77A 1AXCA 1RWZA 1W60A 1YYPA 1B8HA 3TBLA 3U61F 3GGRC 5H0TA 3U60F 1GE8A 3VKXA 3AIXB 5A6DA 1RXMA 3IFVA 2NTIA 5E0TA 3P87A 2AWAA 3GPMA 4L6PA 3GGRA 3K4XA 1ISQA 3A2FB 2NTIC 2HIKB 1IZ5A 3HI8A 1VYJA 2ZVMA 3U5ZF 2AVTA 2ZVVA 2IX2B 2IO4B 4ZTDA 5IXAA 5B7OA 4RJFA 5AUJA 3AIXA 3AIZC 4L60A 3GPNA 2HIIB 2IX2C 3F1WA 3FDSC 2ZVWA 3V61B 3V62B 2HIKA 3LX2A 3AIZA 2OD8A 5IWDA 3FDSD 2ZVKA 1UD9A 2IO4A 2IX2A 3A1JB 1U76A 2HIKC 2IZOB
chains in the Genus database with same CATH superfamily
3P83A 2IJXA 5DA7A 5CFKA 3WGWA 3G65B 2HIIA 3A1JC 5HACA 3I2MX 5DAIA 4HK1A 1IZ4A 5IY4A 3G65C 2Z0LA 1UL1A 2ZVLA 2HIIC 3LX1A 4YHRA 1DMLA 1RXZA 3HSLX 3P91A 3A1JA 1PLQA 1VYMA 4TR6A 5E0VA 1SXJF 2NTIB 3G65A 4D2GA 3V60B 1CZDA 2IZOC 5E0UA 1T6LA 1PLRA 4CS5A 3GGRB 1U7BA 5JNED 1B77A 1AXCA 1RWZA 1W60A 1YYPA 1B8HA 3TBLA 3U61F 3GGRC 5H0TA 3U60F 1GE8A 3VKXA 3AIXB 5A6DA 1RXMA 3IFVA 2NTIA 5E0TA 3P87A 2AWAA 3GPMA 4L6PA 3GGRA 3K4XA 1ISQA 3A2FB 2NTIC 2HIKB 1IZ5A 3HI8A 1VYJA 2ZVMA 3U5ZF 2AVTA 2ZVVA 2IX2B 2IO4B 4ZTDA 5IXAA 5B7OA 4RJFA 5AUJA 3AIXA 3AIZC 4L60A 3GPNA 2HIIB 2IX2C 3F1WA 3FDSC 2ZVWA 3V61B 3V62B 2HIKA 3LX2A 3AIZA 2OD8A 5IWDA 3FDSD 2ZVKA 1UD9A 2IO4A 2IX2A 3A1JB 1U76A 2HIKC 2IZOB
chains in the Genus database with same CATH topology
3P83A 2IJXA 5DA7A 5CFKA 3WGWA 3G65B 2HIIA 3A1JC 5HACA 3I2MX 5DAIA 4HK1A 1IZ4A 5IY4A 3G65C 2Z0LA 1UL1A 2ZVLA 2HIIC 3LX1A 4YHRA 1DMLA 1RXZA 3HSLX 3P91A 3A1JA 1PLQA 1VYMA 4TR6A 5E0VA 1SXJF 2NTIB 3G65A 4D2GA 3V60B 1CZDA 2IZOC 5E0UA 1T6LA 1PLRA 4CS5A 3GGRB 1U7BA 5JNED 1B77A 1AXCA 1RWZA 1W60A 1YYPA 1B8HA 3TBLA 3U61F 3GGRC 5H0TA 3U60F 1GE8A 3VKXA 3AIXB 5A6DA 1RXMA 3IFVA 2NTIA 5E0TA 3P87A 2AWAA 3GPMA 4L6PA 3GGRA 3K4XA 1ISQA 3A2FB 2NTIC 2HIKB 1IZ5A 3HI8A 1VYJA 2ZVMA 3U5ZF 2AVTA 2ZVVA 2IX2B 2IO4B 4ZTDA 5IXAA 5B7OA 4RJFA 5AUJA 3AIXA 3AIZC 4L60A 3GPNA 2HIIB 2IX2C 3F1WA 3FDSC 2ZVWA 3V61B 3V62B 2HIKA 3LX2A 3AIZA 2OD8A 5IWDA 3FDSD 2ZVKA 1UD9A 2IO4A 2IX2A 3A1JB 1U76A 2HIKC 2IZOB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3P83 A;  2IJX A;  5DA7 A;  5CFK A;  3WGW A;  3G65 B;  2HII A;  3A1J C;  5HAC A;  3I2M X;  5DAI A;  4HK1 A;  1IZ4 A;  5IY4 A;  3G65 C;  2Z0L A;  1UL1 A;  2ZVL A;  2HII C;  3LX1 A;  4YHR A;  1DML A;  1RXZ A;  3HSL X;  3P91 A;  3A1J A;  1PLQ A;  1VYM A;  4TR6 A;  5E0V A;  1SXJ F;  2NTI B;  3G65 A;  4D2G A;  3V60 B;  1CZD A;  2IZO C;  5E0U A;  1T6L A;  1PLR A;  4CS5 A;  3GGR B;  1U7B A;  5JNE D;  1B77 A;  1AXC A;  1RWZ A;  1W60 A;  1YYP A;  1B8H A;  3TBL A;  3U61 F;  3GGR C;  5H0T A;  3U60 F;  1GE8 A;  3VKX A;  3AIX B;  5A6D A;  1RXM A;  3IFV A;  2NTI A;  5E0T A;  3P87 A;  2AWA A;  3GPM A;  4L6P A;  3GGR A;  3K4X A;  1ISQ A;  3A2F B;  2NTI C;  2HIK B;  1IZ5 A;  3HI8 A;  1VYJ A;  2ZVM A;  3U5Z F;  2AVT A;  2ZVV A;  2IX2 B;  2IO4 B;  4ZTD A;  5IXA A;  5B7O A;  4RJF A;  5AUJ A;  3AIX A;  3AIZ C;  4L60 A;  3GPN A;  2HII B;  2IX2 C;  3F1W A;  3FDS C;  2ZVW A;  3V61 B;  3V62 B;  2HIK A;  3LX2 A;  3AIZ A;  2OD8 A;  5IWD A;  3FDS D;  2ZVK A;  1UD9 A;  2IO4 A;  2IX2 A;  3A1J B;  1U76 A;  2HIK C;  2IZO B; 
#chains in the Genus database with same CATH topology
 3P83 A;  2IJX A;  5DA7 A;  5CFK A;  3WGW A;  3G65 B;  2HII A;  3A1J C;  5HAC A;  3I2M X;  5DAI A;  4HK1 A;  1IZ4 A;  5IY4 A;  3G65 C;  2Z0L A;  1UL1 A;  2ZVL A;  2HII C;  3LX1 A;  4YHR A;  1DML A;  1RXZ A;  3HSL X;  3P91 A;  3A1J A;  1PLQ A;  1VYM A;  4TR6 A;  5E0V A;  1SXJ F;  2NTI B;  3G65 A;  4D2G A;  3V60 B;  1CZD A;  2IZO C;  5E0U A;  1T6L A;  1PLR A;  4CS5 A;  3GGR B;  1U7B A;  5JNE D;  1B77 A;  1AXC A;  1RWZ A;  1W60 A;  1YYP A;  1B8H A;  3TBL A;  3U61 F;  3GGR C;  5H0T A;  3U60 F;  1GE8 A;  3VKX A;  3AIX B;  5A6D A;  1RXM A;  3IFV A;  2NTI A;  5E0T A;  3P87 A;  2AWA A;  3GPM A;  4L6P A;  3GGR A;  3K4X A;  1ISQ A;  3A2F B;  2NTI C;  2HIK B;  1IZ5 A;  3HI8 A;  1VYJ A;  2ZVM A;  3U5Z F;  2AVT A;  2ZVV A;  2IX2 B;  2IO4 B;  4ZTD A;  5IXA A;  5B7O A;  4RJF A;  5AUJ A;  3AIX A;  3AIZ C;  4L60 A;  3GPN A;  2HII B;  2IX2 C;  3F1W A;  3FDS C;  2ZVW A;  3V61 B;  3V62 B;  2HIK A;  3LX2 A;  3AIZ A;  2OD8 A;  5IWD A;  3FDS D;  2ZVK A;  1UD9 A;  2IO4 A;  2IX2 A;  3A1J B;  1U76 A;  2HIK C;  2IZO B; 
#chains in the Genus database with same CATH homology
 3P83 A;  2IJX A;  5DA7 A;  5CFK A;  3WGW A;  3G65 B;  2HII A;  3A1J C;  5HAC A;  3I2M X;  5DAI A;  4HK1 A;  1IZ4 A;  5IY4 A;  3G65 C;  2Z0L A;  1UL1 A;  2ZVL A;  2HII C;  3LX1 A;  4YHR A;  1DML A;  1RXZ A;  3HSL X;  3P91 A;  3A1J A;  1PLQ A;  1VYM A;  4TR6 A;  5E0V A;  1SXJ F;  2NTI B;  3G65 A;  4D2G A;  3V60 B;  1CZD A;  2IZO C;  5E0U A;  1T6L A;  1PLR A;  4CS5 A;  3GGR B;  1U7B A;  5JNE D;  1B77 A;  1AXC A;  1RWZ A;  1W60 A;  1YYP A;  1B8H A;  3TBL A;  3U61 F;  3GGR C;  5H0T A;  3U60 F;  1GE8 A;  3VKX A;  3AIX B;  5A6D A;  1RXM A;  3IFV A;  2NTI A;  5E0T A;  3P87 A;  2AWA A;  3GPM A;  4L6P A;  3GGR A;  3K4X A;  1ISQ A;  3A2F B;  2NTI C;  2HIK B;  1IZ5 A;  3HI8 A;  1VYJ A;  2ZVM A;  3U5Z F;  2AVT A;  2ZVV A;  2IX2 B;  2IO4 B;  4ZTD A;  5IXA A;  5B7O A;  4RJF A;  5AUJ A;  3AIX A;  3AIZ C;  4L60 A;  3GPN A;  2HII B;  2IX2 C;  3F1W A;  3FDS C;  2ZVW A;  3V61 B;  3V62 B;  2HIK A;  3LX2 A;  3AIZ A;  2OD8 A;  5IWD A;  3FDS D;  2ZVK A;  1UD9 A;  2IO4 A;  2IX2 A;  3A1J B;  1U76 A;  2HIK C;  2IZO B; 
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