2NTIA

Crystal structure of pcna123 heterotrimer.
Total Genus 64

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
248
structure length
248
Chain Sequence
MVKIVYPNAKDFFSFINSITNVTDSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSVKKILSKASSKKATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLTEPKVNLAVNFTTDESVLNVIAADVTLVGEEMRISTEEDKIKIEAGEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGENLPMKIDVEAVSGGHMIFWIAPR

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-6)TVIII3 (57-60)TI6 (235-238)AH1 (9-21)TVIII1 (6-9)S7 (87-94)AH4 (202-212)EMPTYTVIII2 (23-26)S2 (25-31)TI1 (31-34)S5 (59-62)S4 (46-53)TI2 (41-44)3H1 (54-56)S6 (66-71)AH2 (74-82)TI3 (84-87)S9 (110-121)S8 (97-104)S10 (134-138)AH3 (140-153)S13 (177-182)S11 (156-162)TIV5 (171-174)S12 (165-170)TII1 (182-185)TIV8 (184-187)TIV9 (187-190)S15 (197-201)TII2 (224-227)S16 (219-224)TI5 (212-215)TI4 (94-97)TIV1 (104-107)S14 (189-192)S17 (227-234)S3 (34-40)S18 (240-245)Updating...
connected with : NaN
molecule tags Dna binding protein
source organism Sulfolobus solfataricus
publication title Structures of monomeric, dimeric and trimeric PCNA: PCNA-ring assembly and opening.
pubmed doi rcsb
molecule keywords DNA polymerase sliding clamp B
total genus 64
structure length 248
sequence length 248
chains with identical sequence D, G
ec nomenclature
pdb deposition date 2006-11-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 2ntiA01
3A1JB 1W60A 4L60A 3U5ZF 3P87A 3P91A 5DA7A 2IZOB 2IO4A 3LX2A 1U76A 3U60F 1RXZA 2HIKB 2IX2C 3V60B 5B7OA 3F1WA 3G65B 1GE8A 4TR6A 3LX1A 3TBLA 2OD8A 2IJXA 4ZTDA 3U61F 1PLRA 3K4XA 2Z0LA 1UL1A 2ZVLA 1B77A 3HSLX 2IO4B 5E0TA 3A2FB 4L6PA 5JNED 1DMLA 3I2MX 2HIIA 1IZ5A 2HIIC 2ZVWA 2IX2A 5CFKA 1YYPA 1IZ4A 1RXMA 1CZDA 5IXAA 4RJFA 1PLQA 3P83A 5DAIA 5A6DA 1B8HA 2ZVVA 1U7BA 3V62B 3AIXA 1RWZA 3WGWA 4D2GA 2HIIB 3GGRA 3GGRC 1T6LA 2IX2B 3FDSD 5H0TA 2AVTA 1SXJF 3IFVA 2ZVMA 5IY4A 3AIZA 3AIZC 4CS5A 2NTIA 2NTIC 3A1JA 2AWAA 3A1JC 5E0UA 4YHRA 3V61B 1UD9A 5AUJA 5E0VA 3GPMA 3HI8A 1AXCA 2ZVKA 2IZOC 3AIXB 3GPNA 1VYMA 5HACA 5IWDA 1VYJA 3GGRB 2HIKA 2HIKC 3VKXA 3G65A 3FDSC 3G65C 1ISQA 4HK1A 2NTIB
chains in the Genus database with same CATH superfamily
3A1JB 1W60A 4L60A 3U5ZF 3P87A 3P91A 5DA7A 2IZOB 2IO4A 3LX2A 1U76A 3U60F 1RXZA 2HIKB 2IX2C 3V60B 5B7OA 3F1WA 3G65B 1GE8A 4TR6A 3LX1A 3TBLA 2OD8A 2IJXA 4ZTDA 3U61F 1PLRA 3K4XA 2Z0LA 1UL1A 2ZVLA 1B77A 3HSLX 2IO4B 5E0TA 3A2FB 4L6PA 5JNED 1DMLA 3I2MX 2HIIA 1IZ5A 2HIIC 2ZVWA 2IX2A 5CFKA 1YYPA 1IZ4A 1RXMA 1CZDA 5IXAA 4RJFA 1PLQA 3P83A 5DAIA 5A6DA 1B8HA 2ZVVA 1U7BA 3V62B 3AIXA 1RWZA 3WGWA 4D2GA 2HIIB 3GGRA 3GGRC 1T6LA 2IX2B 3FDSD 5H0TA 2AVTA 1SXJF 3IFVA 2ZVMA 5IY4A 3AIZA 3AIZC 4CS5A 2NTIA 2NTIC 3A1JA 2AWAA 3A1JC 5E0UA 4YHRA 3V61B 1UD9A 5AUJA 5E0VA 3GPMA 3HI8A 1AXCA 2ZVKA 2IZOC 3AIXB 3GPNA 1VYMA 5HACA 5IWDA 1VYJA 3GGRB 2HIKA 2HIKC 3VKXA 3G65A 3FDSC 3G65C 1ISQA 4HK1A 2NTIB
chains in the Genus database with same CATH topology
3A1JB 1W60A 4L60A 3U5ZF 3P87A 3P91A 5DA7A 2IZOB 2IO4A 3LX2A 1U76A 3U60F 1RXZA 2HIKB 2IX2C 3V60B 5B7OA 3F1WA 3G65B 1GE8A 4TR6A 3LX1A 3TBLA 2OD8A 2IJXA 4ZTDA 3U61F 1PLRA 3K4XA 2Z0LA 1UL1A 2ZVLA 1B77A 3HSLX 2IO4B 5E0TA 3A2FB 4L6PA 5JNED 1DMLA 3I2MX 2HIIA 1IZ5A 2HIIC 2ZVWA 2IX2A 5CFKA 1YYPA 1IZ4A 1RXMA 1CZDA 5IXAA 4RJFA 1PLQA 3P83A 5DAIA 5A6DA 1B8HA 2ZVVA 1U7BA 3V62B 3AIXA 1RWZA 3WGWA 4D2GA 2HIIB 3GGRA 3GGRC 1T6LA 2IX2B 3FDSD 5H0TA 2AVTA 1SXJF 3IFVA 2ZVMA 5IY4A 3AIZA 3AIZC 4CS5A 2NTIA 2NTIC 3A1JA 2AWAA 3A1JC 5E0UA 4YHRA 3V61B 1UD9A 5AUJA 5E0VA 3GPMA 3HI8A 1AXCA 2ZVKA 2IZOC 3AIXB 3GPNA 1VYMA 5HACA 5IWDA 1VYJA 3GGRB 2HIKA 2HIKC 3VKXA 3G65A 3FDSC 3G65C 1ISQA 4HK1A 2NTIB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3A1J B;  1W60 A;  4L60 A;  3U5Z F;  3P87 A;  3P91 A;  5DA7 A;  2IZO B;  2IO4 A;  3LX2 A;  1U76 A;  3U60 F;  1RXZ A;  2HIK B;  2IX2 C;  3V60 B;  5B7O A;  3F1W A;  3G65 B;  1GE8 A;  4TR6 A;  3LX1 A;  3TBL A;  2OD8 A;  2IJX A;  4ZTD A;  3U61 F;  1PLR A;  3K4X A;  2Z0L A;  1UL1 A;  2ZVL A;  1B77 A;  3HSL X;  2IO4 B;  5E0T A;  3A2F B;  4L6P A;  5JNE D;  1DML A;  3I2M X;  2HII A;  1IZ5 A;  2HII C;  2ZVW A;  2IX2 A;  5CFK A;  1YYP A;  1IZ4 A;  1RXM A;  1CZD A;  5IXA A;  4RJF A;  1PLQ A;  3P83 A;  5DAI A;  5A6D A;  1B8H A;  2ZVV A;  1U7B A;  3V62 B;  3AIX A;  1RWZ A;  3WGW A;  4D2G A;  2HII B;  3GGR A;  3GGR C;  1T6L A;  2IX2 B;  3FDS D;  5H0T A;  2AVT A;  1SXJ F;  3IFV A;  2ZVM A;  5IY4 A;  3AIZ A;  3AIZ C;  4CS5 A;  2NTI A;  2NTI C;  3A1J A;  2AWA A;  3A1J C;  5E0U A;  4YHR A;  3V61 B;  1UD9 A;  5AUJ A;  5E0V A;  3GPM A;  3HI8 A;  1AXC A;  2ZVK A;  2IZO C;  3AIX B;  3GPN A;  1VYM A;  5HAC A;  5IWD A;  1VYJ A;  3GGR B;  2HIK A;  2HIK C;  3VKX A;  3G65 A;  3FDS C;  3G65 C;  1ISQ A;  4HK1 A;  2NTI B; 
#chains in the Genus database with same CATH topology
 3A1J B;  1W60 A;  4L60 A;  3U5Z F;  3P87 A;  3P91 A;  5DA7 A;  2IZO B;  2IO4 A;  3LX2 A;  1U76 A;  3U60 F;  1RXZ A;  2HIK B;  2IX2 C;  3V60 B;  5B7O A;  3F1W A;  3G65 B;  1GE8 A;  4TR6 A;  3LX1 A;  3TBL A;  2OD8 A;  2IJX A;  4ZTD A;  3U61 F;  1PLR A;  3K4X A;  2Z0L A;  1UL1 A;  2ZVL A;  1B77 A;  3HSL X;  2IO4 B;  5E0T A;  3A2F B;  4L6P A;  5JNE D;  1DML A;  3I2M X;  2HII A;  1IZ5 A;  2HII C;  2ZVW A;  2IX2 A;  5CFK A;  1YYP A;  1IZ4 A;  1RXM A;  1CZD A;  5IXA A;  4RJF A;  1PLQ A;  3P83 A;  5DAI A;  5A6D A;  1B8H A;  2ZVV A;  1U7B A;  3V62 B;  3AIX A;  1RWZ A;  3WGW A;  4D2G A;  2HII B;  3GGR A;  3GGR C;  1T6L A;  2IX2 B;  3FDS D;  5H0T A;  2AVT A;  1SXJ F;  3IFV A;  2ZVM A;  5IY4 A;  3AIZ A;  3AIZ C;  4CS5 A;  2NTI A;  2NTI C;  3A1J A;  2AWA A;  3A1J C;  5E0U A;  4YHR A;  3V61 B;  1UD9 A;  5AUJ A;  5E0V A;  3GPM A;  3HI8 A;  1AXC A;  2ZVK A;  2IZO C;  3AIX B;  3GPN A;  1VYM A;  5HAC A;  5IWD A;  1VYJ A;  3GGR B;  2HIK A;  2HIK C;  3VKX A;  3G65 A;  3FDS C;  3G65 C;  1ISQ A;  4HK1 A;  2NTI B; 
#chains in the Genus database with same CATH homology
 3A1J B;  1W60 A;  4L60 A;  3U5Z F;  3P87 A;  3P91 A;  5DA7 A;  2IZO B;  2IO4 A;  3LX2 A;  1U76 A;  3U60 F;  1RXZ A;  2HIK B;  2IX2 C;  3V60 B;  5B7O A;  3F1W A;  3G65 B;  1GE8 A;  4TR6 A;  3LX1 A;  3TBL A;  2OD8 A;  2IJX A;  4ZTD A;  3U61 F;  1PLR A;  3K4X A;  2Z0L A;  1UL1 A;  2ZVL A;  1B77 A;  3HSL X;  2IO4 B;  5E0T A;  3A2F B;  4L6P A;  5JNE D;  1DML A;  3I2M X;  2HII A;  1IZ5 A;  2HII C;  2ZVW A;  2IX2 A;  5CFK A;  1YYP A;  1IZ4 A;  1RXM A;  1CZD A;  5IXA A;  4RJF A;  1PLQ A;  3P83 A;  5DAI A;  5A6D A;  1B8H A;  2ZVV A;  1U7B A;  3V62 B;  3AIX A;  1RWZ A;  3WGW A;  4D2G A;  2HII B;  3GGR A;  3GGR C;  1T6L A;  2IX2 B;  3FDS D;  5H0T A;  2AVT A;  1SXJ F;  3IFV A;  2ZVM A;  5IY4 A;  3AIZ A;  3AIZ C;  4CS5 A;  2NTI A;  2NTI C;  3A1J A;  2AWA A;  3A1J C;  5E0U A;  4YHR A;  3V61 B;  1UD9 A;  5AUJ A;  5E0V A;  3GPM A;  3HI8 A;  1AXC A;  2ZVK A;  2IZO C;  3AIX B;  3GPN A;  1VYM A;  5HAC A;  5IWD A;  1VYJ A;  3GGR B;  2HIK A;  2HIK C;  3VKX A;  3G65 A;  3FDS C;  3G65 C;  1ISQ A;  4HK1 A;  2NTI B; 
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