2OG0A

Crystal structure of the lambda xis-dna complex
Total Genus 10
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
10
sequence length
51
structure length
51
Chain Sequence
MYLTLQEWNARQRRPRSLETVRRWVRESRIFPPPVKDGREYLFHESAVKVD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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connected with : NaN
publication title Fis targets assembly of the xis nucleoprotein filament to promote excisive recombination by phage lambda.
pubmed doi rcsb
molecule tags Dna binding protein/dna
source organism Enterobacteria phage lambda
molecule keywords 5'-D(*GP*TP*AP*TP*TP*AP*TP*GP*TP*AP*GP*TP*CP*TP*GP*TP*TP*T)-
total genus 10
structure length 51
sequence length 51
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-01-04
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1660.20 Mainly Alpha Orthogonal Bundle Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 2og0A00
2OG0A 1LX8A 1PM6A 2IEFA 1RH6A
chains in the Genus database with same CATH superfamily
3EZ6A 3EZ7A 2ZHGA 3D70A 3HH0A 3Q3DA 3GP4A 2JMLA 4J2NA 3Q2YA 2KVVA 5I41B 2DG6A 5E01A 3EZ2A 4R4EA 4R22B 1Y6UA 2ZHHA 1Q07A 3GPVA 5I44A 2VZ4A 2IEFA 1Q09A 3QAOA 4R24B 3Q5RA 3D71A 1R8DA 1Q05A 1Q06A 1Q08A 3D6YA 3Q5PA 3IAOA 1LX8A 3EZ9A 4LHFA 3UCSA 3Q5SA 5D90A 3D6ZA 4DCZA 3Q1MA 3EZFA 1RH6A 1JBGA 4WLSA 1Q0AA 5D8CA 2OG0A 1EXIA 1PM6A 1EXJA 4WLWA 1R8EA
chains in the Genus database with same CATH topology
3EZ6A 3EZ7A 2ZHGA 3D70A 3HH0A 3Q3DA 3GP4A 2JMLA 4J2NA 3Q2YA 2KVVA 5I41B 2DG6A 5E01A 3EZ2A 4R4EA 4R22B 1Y6UA 2ZHHA 1Q07A 3GPVA 5I44A 2VZ4A 2IEFA 1Q09A 3QAOA 4R24B 3Q5RA 3D71A 1R8DA 1Q05A 1Q06A 1Q08A 3D6YA 3Q5PA 3IAOA 1LX8A 3EZ9A 4LHFA 3UCSA 3Q5SA 5D90A 3D6ZA 4DCZA 3Q1MA 3EZFA 1RH6A 1JBGA 4WLSA 1Q0AA 5D8CA 2OG0A 1EXIA 1PM6A 1EXJA 4WLWA 1R8EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OG0 A;  1LX8 A;  1PM6 A;  2IEF A;  1RH6 A; 
#chains in the Genus database with same CATH topology
 3EZ6 A;  3EZ7 A;  2ZHG A;  3D70 A;  3HH0 A;  3Q3D A;  3GP4 A;  2JML A;  4J2N A;  3Q2Y A;  2KVV A;  5I41 B;  2DG6 A;  5E01 A;  3EZ2 A;  4R4E A;  4R22 B;  1Y6U A;  2ZHH A;  1Q07 A;  3GPV A;  5I44 A;  2VZ4 A;  2IEF A;  1Q09 A;  3QAO A;  4R24 B;  3Q5R A;  3D71 A;  1R8D A;  1Q05 A;  1Q06 A;  1Q08 A;  3D6Y A;  3Q5P A;  3IAO A;  1LX8 A;  3EZ9 A;  4LHF A;  3UCS A;  3Q5S A;  5D90 A;  3D6Z A;  4DCZ A;  3Q1M A;  3EZF A;  1RH6 A;  1JBG A;  4WLS A;  1Q0A A;  5D8C A;  2OG0 A;  1EXI A;  1PM6 A;  1EXJ A;  4WLW A;  1R8E A; 
#chains in the Genus database with same CATH homology
 3EZ6 A;  3EZ7 A;  2ZHG A;  3D70 A;  3HH0 A;  3Q3D A;  3GP4 A;  2JML A;  4J2N A;  3Q2Y A;  2KVV A;  5I41 B;  2DG6 A;  5E01 A;  3EZ2 A;  4R4E A;  4R22 B;  1Y6U A;  2ZHH A;  1Q07 A;  3GPV A;  5I44 A;  2VZ4 A;  2IEF A;  1Q09 A;  3QAO A;  4R24 B;  3Q5R A;  3D71 A;  1R8D A;  1Q05 A;  1Q06 A;  1Q08 A;  3D6Y A;  3Q5P A;  3IAO A;  1LX8 A;  3EZ9 A;  4LHF A;  3UCS A;  3Q5S A;  5D90 A;  3D6Z A;  4DCZ A;  3Q1M A;  3EZF A;  1RH6 A;  1JBG A;  4WLS A;  1Q0A A;  5D8C A;  2OG0 A;  1EXI A;  1PM6 A;  1EXJ A;  4WLW A;  1R8E A; 
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similar chains in the pdb database (?% sequence similarity)

 
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