The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
33
|
sequence length |
105
|
structure length |
100
|
Chain Sequence |
SYSVGQVAGFAGVTVRTLHHYDDIGLLVPSERSHAGHRRYSDADLDRLQQILFYRELGFPLDEVAALLDDRAHLRRQHELLSARIGKLQKMAAAVEQAME
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure of the Transcriptionally Inactive Merr Domain Tipan in Complex with DNA
rcsb |
| molecule tags |
Transcription
|
| source organism |
Streptomyces lividans
|
| molecule keywords |
HTH-TYPE TRANSCRIPTIONAL ACTIVATOR TIPA
|
| total genus |
33
|
| structure length |
100
|
| sequence length |
105
|
| ec nomenclature | |
| pdb deposition date | 2008-07-30 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF13411 | MerR_1 | MerR HTH family regulatory protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 | Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 |
#chains in the Genus database with same CATH superfamily 5D8C A; 3D6Z A; 1Q0A A; 3IAO A; 2JML A; 3Q5P A; 3Q5S A; 3Q2Y A; 1R8D A; 1R8E A; 4WLS A; 3Q1M A; 3QAO A; 3D6Y A; 3GP4 A; 5E01 A; 5I44 A; 1EXJ A; 2ZHH A; 2ZHG A; 3D71 A; 2DG6 A; 4R4E A; 3UCS A; 1Q06 A; 1Q08 A; 3D70 A; 1Q05 A; 4WLW A; 4R24 B; 1Q07 A; 4J2N A; 3GPV A; 1EXI A; 5I41 B; 5D90 A; 2VZ4 A; 3HH0 A; 4R22 B; 3Q3D A; 1Q09 A; 3Q5R A; 1JBG A; #chains in the Genus database with same CATH topology 5D8C A; 2KVV A; 1Q0A A; 3IAO A; 2JML A; 3D6Z A; 3Q5P A; 3Q2Y A; 3Q5S A; 1R8D A; 4WLS A; 1R8E A; 3Q1M A; 3QAO A; 3D6Y A; 3GP4 A; 5E01 A; 5I44 A; 3EZ7 A; 1Y6U A; 1EXJ A; 2ZHH A; 2ZHG A; 3D71 A; 2OG0 A; 2DG6 A; 4R4E A; 3UCS A; 1Q06 A; 1Q08 A; 3EZF A; 3D70 A; 4LHF A; 1Q05 A; 4WLW A; 1LX8 A; 4DCZ A; 4R24 B; 1Q07 A; 4J2N A; 3GPV A; 1EXI A; 5I41 B; 3EZ9 A; 3EZ6 A; 5D90 A; 2IEF A; 2VZ4 A; 3HH0 A; 1PM6 A; 4R22 B; 1RH6 A; 3Q3D A; 1Q09 A; 3Q5R A; 3EZ2 A; 1JBG A; #chains in the Genus database with same CATH homology 5D8C A; 2KVV A; 1Q0A A; 3IAO A; 2JML A; 3D6Z A; 3Q5P A; 3Q2Y A; 3Q5S A; 1R8D A; 4WLS A; 1R8E A; 3Q1M A; 3QAO A; 3D6Y A; 3GP4 A; 5E01 A; 5I44 A; 3EZ7 A; 1Y6U A; 1EXJ A; 2ZHH A; 2ZHG A; 3D71 A; 2OG0 A; 2DG6 A; 4R4E A; 3UCS A; 1Q06 A; 1Q08 A; 3EZF A; 3D70 A; 4LHF A; 1Q05 A; 4WLW A; 1LX8 A; 4DCZ A; 4R24 B; 1Q07 A; 4J2N A; 3GPV A; 1EXI A; 5I41 B; 3EZ9 A; 3EZ6 A; 5D90 A; 2IEF A; 2VZ4 A; 3HH0 A; 1PM6 A; 4R22 B; 1RH6 A; 3Q3D A; 1Q09 A; 3Q5R A; 3EZ2 A; 1JBG A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
