2W6T | Genus

Total Genus 221

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	221
sequence length	772
structure length	772
Chain Sequence	QEVEFDIPPQALGSALQEFGRQADIQVLYRPEEVRNKRSSAIKGKLEPNQAITELLRGTGASVDFQGNAITISVAEAADSSVDLGATMITSNQLGTITEDSGSYTPGTIATATRLVLTPRETPQSITVVTRQNMDDFGLNNIDDVMRHTPGITVSAYDTDRNNYYARGFSINNFQYDGIPSTARNVGYSAGNTLSDMAIYDRVEVLKGATGLLTGAGSLGATINLIRKKPTHEFKGHVELGAGSWDNYRSELDVSGPLTESGNVRGRAVAAYQDKHSFMDHYERKTSVYYGILEFDLNPDTMLTVGADYQDNDPKGSGWSGSFPLFDSQGNRNDVSRSFNNGAKWSSWEQYTRTVFANLEHNFANGWVGKVQLDHKINGYHAPLGAIMGDWPAPDNSAKIVAQKYTGETKSNSLDIYLTGPFQFLGREHELVVGTSASFSHWEGKSYWNLRNYDNTTDDFINWDGDIGKPDWGTPSQYIDDKTRQLGSYMTARFNVTDDLNLFLGGRVVDYRVTGLNPTIRESGRFIPYVGAVYDLNDTYSVYASYTDIFMPQDSWYRDSSNKLLEPDEGQNYEIGIKGEYLDGRLNTSLAYFEIHEENRAEEDALYNSKPTNPAITYAYKGIKAKTKGYEAEISGELAPGWQVQAGYTHKIIRDDSGKKVSTWEPQDQLSLYTSYKFKGALDKLTVGGGARWQGKSWQMVYNNPRSRWEKFSQEDYWLVDLMARYQITDKLSASVNVNNVFDKTYYTNIGFYTSASYGDPRNLMFSTRWDF

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Membrane protein
source organism	Pseudomonas aeruginosa
publication title	Fpva Bound to Non-Cognate Pyoverdines: Molecular Basis of Siderophore Recognition by an Iron Transporter. pubmed doi rcsb
molecule keywords	FERRIPYOVERDINE RECEPTOR
total genus	221
structure length	772
sequence length	772
chains with identical sequence	B
ec nomenclature
pdb deposition date	2008-12-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00593	TonB_dep_Rec	TonB dependent receptor
A	PF07660	STN	Secretin and TonB N terminus short domain
A	PF07715	Plug	TonB-dependent Receptor Plug Domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.40.170.20	Mainly Beta	Beta Barrel	Maltoporin; Chain A	TonB-dependent receptor, beta-barrel domain	2w6tA03
2.170.130.10	Mainly Beta	Beta Complex	Ferric Hydroxamate Uptake Protein; Chain A, domain 1	TonB-dependent receptor, plug domain	2w6tA02
3.55.50.30	Alpha Beta	3-Layer(bab) Sandwich	Phage tail protein beta-alpha-beta fold	Phage tail protein beta-alpha-beta fold	2w6tA01

2M5JA 1FEPA 2IAHA 1FCPA 1FI1A 2HDFA 1PNZA 3V89A 4B7OA 1NQFA 1UJWA 4M0NA 2W75A 3RGMA 4G08A 4AIPA 4AIQA 1QFFA 1BY5A 2HDIA 1ZZVA 1QJQA 3CSNA 1QFGA 3V8XA 1PO3A 2W76A 4CU4A 1QKCA 3DDRA 3GR5A 4EPAA 4JTMA 2W6TA 1NQHA 1PO0A 2A02A 2O5PA 3FHHA 1KMOA 1KMPA 4M0HA 1XKWA 4AR0A 2GSKA 2W77A 4RDRA 2D1UA 2GUFA 1NQEA 5FOKA 2W16A 3M8DA 3RGNA 3EFMA 2W78A 1NQGA 4RDTA 1BY3A 2GRXA 1XKHA 2W6UA 3QLBA 2FCPA 3CSLA 3EZJA 2YSUA 3M8BA
chains in the Genus database with same CATH superfamily

1FI1A 1OH2P 2P5ZX 2L4WA 2WZPR 4G08A 3GS9A 3CSNA 1QFGA 1PO3A 1QKCA 3FHHA 1KMOA 4M0HA 4AR0A 2W77A 2D1UA 2GUFA 1K28D 3RGNA 4RDTA 1XKHA 2W6UA 3QLBA 3EZJA 2YSUA 3M8BA 2IAHA 3V89A 1UJWA 4AIPA 4AIQA 3D37A 1QJQA 1MPQA 3V8XA 1WTHD 1AF6A 4JTMA 2W6TA 1NQHA 1PO0A 1WRUA 1OH2Q 1NQEA 2W16A 3EFMA 1MPNA 1NQGA 1MPOA 2M5JA 1FEPA 2HDFA 1PNZA 1MALA 4B7OA 1NQFA 4M0NA 2W75A 1MPMA 1JBIA 2W76A 3DDRA 2O5PA 4MTKA 1XKWA 3M8DA 3ADYA 1BY3A 2GRXA 2FCPA 1ZZVA 2X531 3CDDA 1FCPA 1MPRA 3OV5A 2Z6BD 2MPRA 3RGMA 1QFFA 1BY5A 2HDIA 1A0TP 4CU4A 3GR5A 4EPAA 1A0SP 2A02A 1KMPA 2GSKA 4RDRA 5FOKA 2W78A 3CSLA 4UHVA
chains in the Genus database with same CATH topology

1FI1A 2L4WA 2WZPR 4G08A 3GS9A 3CSNA 1QFGA 1PO3A 1QKCA 3FHHA 1KMOA 4M0HA 4AR0A 2W77A 2D1UA 2GUFA 1K28D 3RGNA 4RDTA 1XKHA 2W6UA 3QLBA 3EZJA 2YSUA 3M8BA 2IAHA 3V89A 1UJWA 4AIPA 4AIQA 1QJQA 3V8XA 1WTHD 4JTMA 2W6TA 1NQHA 1PO0A 1NQEA 2W16A 3EFMA 1NQGA 2M5JA 1FEPA 2HDFA 1PNZA 4B7OA 1NQFA 4M0NA 2W75A 2W76A 3DDRA 2O5PA 1XKWA 3M8DA 3ADYA 1BY3A 2GRXA 2FCPA 1ZZVA 2X531 1FCPA 3OV5A 2Z6BD 3RGMA 1QFFA 1BY5A 2HDIA 4CU4A 3GR5A 4EPAA 2A02A 1KMPA 2GSKA 4RDRA 5FOKA 2W78A 3CSLA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2M5J A;  1FEP A;  2IAH A;  1FCP A;  1FI1 A;  2HDF A;  1PNZ A;  3V89 A;  4B7O A;  1NQF A;  1UJW A;  4M0N A;  2W75 A;  3RGM A;  4G08 A;  4AIP A;  4AIQ A;  1QFF A;  1BY5 A;  2HDI A;  1ZZV A;  1QJQ A;  3CSN A;  1QFG A;  3V8X A;  1PO3 A;  2W76 A;  4CU4 A;  1QKC A;  3DDR A;  3GR5 A;  4EPA A;  4JTM A;  2W6T A;  1NQH A;  1PO0 A;  2A02 A;  2O5P A;  3FHH A;  1KMO A;  1KMP A;  4M0H A;  1XKW A;  4AR0 A;  2GSK A;  2W77 A;  4RDR A;  2D1U A;  2GUF A;  1NQE A;  5FOK A;  2W16 A;  3M8D A;  3RGN A;  3EFM A;  2W78 A;  1NQG A;  4RDT A;  1BY3 A;  2GRX A;  1XKH A;  2W6U A;  3QLB A;  2FCP A;  3CSL A;  3EZJ A;  2YSU A;  3M8B A; 
#chains in the Genus database with same CATH topology
 1FI1 A;  1OH2 P;  2P5Z X;  2L4W A;  2WZP R;  4G08 A;  3GS9 A;  3CSN A;  1QFG A;  1PO3 A;  1QKC A;  3FHH A;  1KMO A;  4M0H A;  4AR0 A;  2W77 A;  2D1U A;  2GUF A;  1K28 D;  3RGN A;  4RDT A;  1XKH A;  2W6U A;  3QLB A;  3EZJ A;  2YSU A;  3M8B A;  2IAH A;  3V89 A;  1UJW A;  4AIP A;  4AIQ A;  3D37 A;  1QJQ A;  1MPQ A;  3V8X A;  1WTH D;  1AF6 A;  4JTM A;  2W6T A;  1NQH A;  1PO0 A;  1WRU A;  1OH2 Q;  1NQE A;  2W16 A;  3EFM A;  1MPN A;  1NQG A;  1MPO A;  2M5J A;  1FEP A;  2HDF A;  1PNZ A;  1MAL A;  4B7O A;  1NQF A;  4M0N A;  2W75 A;  1MPM A;  1JBI A;  2W76 A;  3DDR A;  2O5P A;  4MTK A;  1XKW A;  3M8D A;  3ADY A;  1BY3 A;  2GRX A;  2FCP A;  1ZZV A;  2X53 1;  3CDD A;  1FCP A;  1MPR A;  3OV5 A;  2Z6B D;  2MPR A;  3RGM A;  1QFF A;  1BY5 A;  2HDI A;  1A0T P;  4CU4 A;  3GR5 A;  4EPA A;  1A0S P;  2A02 A;  1KMP A;  2GSK A;  4RDR A;  5FOK A;  2W78 A;  3CSL A;  4UHV A; 
#chains in the Genus database with same CATH homology
 1FI1 A;  2L4W A;  2WZP R;  4G08 A;  3GS9 A;  3CSN A;  1QFG A;  1PO3 A;  1QKC A;  3FHH A;  1KMO A;  4M0H A;  4AR0 A;  2W77 A;  2D1U A;  2GUF A;  1K28 D;  3RGN A;  4RDT A;  1XKH A;  2W6U A;  3QLB A;  3EZJ A;  2YSU A;  3M8B A;  2IAH A;  3V89 A;  1UJW A;  4AIP A;  4AIQ A;  1QJQ A;  3V8X A;  1WTH D;  4JTM A;  2W6T A;  1NQH A;  1PO0 A;  1NQE A;  2W16 A;  3EFM A;  1NQG A;  2M5J A;  1FEP A;  2HDF A;  1PNZ A;  4B7O A;  1NQF A;  4M0N A;  2W75 A;  2W76 A;  3DDR A;  2O5P A;  1XKW A;  3M8D A;  3ADY A;  1BY3 A;  2GRX A;  2FCP A;  1ZZV A;  2X53 1;  1FCP A;  3OV5 A;  2Z6B D;  3RGM A;  1QFF A;  1BY5 A;  2HDI A;  4CU4 A;  3GR5 A;  4EPA A;  2A02 A;  1KMP A;  2GSK A;  4RDR A;  5FOK A;  2W78 A;  3CSL A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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2W6TA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations