2Z0LA

Crystal structure of ebv-dna polymerase accessory protein bmrf1
Total Genus 72

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
299
structure length
299
Chain Sequence
METTQTLRFKTKALAVLSKCYDHAQTHLKGGVLQVNLLSVNYGGPRLAAVANAGTAGLISFEVSPDAVAEWQNHQSPEEAPAAVSFRNLAYGRTCVLGKELFGSAVEQASLQFYKRPQGGSRPEFVKLTMEYDDKVSKSHHTCALMPYMPPASDRLRNEQMIGQVLLMPKTASSLQKWARQQGSGGVKVTLNPDLYVTTYTSGEACLTLDYKPLSVGPYEAFTGPVAKAQDVGAVEAHVVCSVAADSLAAALSLCRIPAVSVPILRFYRSGIIAVVAGLLTSAGDLPLDLSVILFNHAS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (3-9)EMPTYTII1 (10-13)TI1 (12-15)TI5 (103-106)S7 (106-114)S8 (125-132)3H1 (15-17)AH1 (18-29)AH2 (97-102)AH4 (245-255)S3 (46-52)S2 (32-36)TVIII1 (81-84)TI3 (39-42)TIV1 (36-39)TIV2 (40-43)S16 (239-244)S19 (288-294)TII'1 (53-56)S4 (57-63)TIV14 (283-286)3H2 (65-67)S5 (68-73)S6 (83-87)TII2 (90-93)TVIII2 (87-90)O2 (95-95)TIV6 (134-137)S9 (141-144)TVIII4 (120-123)TIV7 (151-154)TIV8 (152-155)S17 (261-268)TI8 (156-159)S14 (212-213)TIV10 (226-229)TII3 (257-260)S10 (162-166)AH3 (169-182)TI10 (193-196)TI9 (192-195)TII'2 (182-185)S15 (232-234)S11 (186-192)S13 (205-210)TII'3 (202-205)S12 (197-202)TI11 (268-271)S18 (272-279)TIV13 (281-284)TIV12 (280-283)TIV5 (76-79)TI7 (154-157)3H3 (218-220)TI6 (132-135)Updating...
connected with : NaN
molecule tags Replication
source organism Human herpesvirus 4
publication title Crystal structure of Epstein-Barr virus DNA polymerase processivity factor BMRF1
pubmed doi rcsb
molecule keywords Early antigen protein D
total genus 72
structure length 299
sequence length 299
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2007-05-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 2z0lA00
2HIIB 3VKXA 1VYJA 2IO4A 2AWAA 3U60F 1IZ5A 1UL1A 2HIIA 3AIXB 1T6LA 2AVTA 1CZDA 2HIKB 2HIKA 2ZVWA 3P83A 3AIZA 3LX1A 5E0UA 1RWZA 5CFKA 5IXAA 5H0TA 3U61F 1ISQA 1RXZA 5IY4A 3F1WA 3GGRC 3A1JC 1SXJF 1B77A 3AIXA 1VYMA 2IX2C 3GPMA 5DAIA 4TR6A 2ZVMA 3G65C 3P91A 5AUJA 2IJXA 1GE8A 2ZVLA 3GGRB 3V61B 3FDSD 3IFVA 1AXCA 1U7BA 2NTIC 3GGRA 3A1JB 5IWDA 2IX2B 2Z0LA 3A1JA 4RJFA 2IX2A 2IZOC 2OD8A 3GPNA 1UD9A 3G65B 1IZ4A 2ZVKA 3G65A 2NTIB 3HSLX 1B8HA 2NTIA 3TBLA 2IZOB 3K4XA 3WGWA 3I2MX 2IO4B 3AIZC 4D2GA 3A2FB 1W60A 5E0TA 5B7OA 4YHRA 3LX2A 5JNED 1DMLA 5E0VA 3V60B 1RXMA 5DA7A 4HK1A 3U5ZF 5HACA 1YYPA 3HI8A 2HIIC 4CS5A 1PLQA 2ZVVA 3FDSC 4L60A 2HIKC 5A6DA 3P87A 4ZTDA 1U76A 1PLRA 4L6PA 3V62B
chains in the Genus database with same CATH superfamily
2HIIB 3VKXA 1VYJA 2IO4A 2AWAA 3U60F 1IZ5A 1UL1A 2HIIA 3AIXB 1T6LA 2AVTA 1CZDA 2HIKB 2HIKA 2ZVWA 3P83A 3AIZA 3LX1A 5E0UA 1RWZA 5CFKA 5IXAA 5H0TA 3U61F 1ISQA 1RXZA 5IY4A 3F1WA 3GGRC 3A1JC 1SXJF 1B77A 3AIXA 1VYMA 2IX2C 3GPMA 5DAIA 4TR6A 2ZVMA 3G65C 3P91A 5AUJA 2IJXA 1GE8A 2ZVLA 3GGRB 3V61B 3FDSD 3IFVA 1AXCA 1U7BA 2NTIC 3GGRA 3A1JB 5IWDA 2IX2B 2Z0LA 3A1JA 4RJFA 2IX2A 2IZOC 2OD8A 3GPNA 1UD9A 3G65B 1IZ4A 2ZVKA 3G65A 2NTIB 3HSLX 1B8HA 2NTIA 3TBLA 2IZOB 3K4XA 3WGWA 3I2MX 2IO4B 3AIZC 4D2GA 3A2FB 1W60A 5E0TA 5B7OA 4YHRA 3LX2A 5JNED 1DMLA 5E0VA 3V60B 1RXMA 5DA7A 4HK1A 3U5ZF 5HACA 1YYPA 3HI8A 2HIIC 4CS5A 1PLQA 2ZVVA 3FDSC 4L60A 2HIKC 5A6DA 3P87A 4ZTDA 1U76A 1PLRA 4L6PA 3V62B
chains in the Genus database with same CATH topology
2HIIB 3VKXA 1VYJA 2IO4A 2AWAA 3U60F 1IZ5A 1UL1A 2HIIA 3AIXB 1T6LA 2AVTA 1CZDA 2HIKB 2HIKA 2ZVWA 3P83A 3AIZA 3LX1A 5E0UA 1RWZA 5CFKA 5IXAA 5H0TA 3U61F 1ISQA 1RXZA 5IY4A 3F1WA 3GGRC 3A1JC 1SXJF 1B77A 3AIXA 1VYMA 2IX2C 3GPMA 5DAIA 4TR6A 2ZVMA 3G65C 3P91A 5AUJA 2IJXA 1GE8A 2ZVLA 3GGRB 3V61B 3FDSD 3IFVA 1AXCA 1U7BA 2NTIC 3GGRA 3A1JB 5IWDA 2IX2B 2Z0LA 3A1JA 4RJFA 2IX2A 2IZOC 2OD8A 3GPNA 1UD9A 3G65B 1IZ4A 2ZVKA 3G65A 2NTIB 3HSLX 1B8HA 2NTIA 3TBLA 2IZOB 3K4XA 3WGWA 3I2MX 2IO4B 3AIZC 4D2GA 3A2FB 1W60A 5E0TA 5B7OA 4YHRA 3LX2A 5JNED 1DMLA 5E0VA 3V60B 1RXMA 5DA7A 4HK1A 3U5ZF 5HACA 1YYPA 3HI8A 2HIIC 4CS5A 1PLQA 2ZVVA 3FDSC 4L60A 2HIKC 5A6DA 3P87A 4ZTDA 1U76A 1PLRA 4L6PA 3V62B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HII B;  3VKX A;  1VYJ A;  2IO4 A;  2AWA A;  3U60 F;  1IZ5 A;  1UL1 A;  2HII A;  3AIX B;  1T6L A;  2AVT A;  1CZD A;  2HIK B;  2HIK A;  2ZVW A;  3P83 A;  3AIZ A;  3LX1 A;  5E0U A;  1RWZ A;  5CFK A;  5IXA A;  5H0T A;  3U61 F;  1ISQ A;  1RXZ A;  5IY4 A;  3F1W A;  3GGR C;  3A1J C;  1SXJ F;  1B77 A;  3AIX A;  1VYM A;  2IX2 C;  3GPM A;  5DAI A;  4TR6 A;  2ZVM A;  3G65 C;  3P91 A;  5AUJ A;  2IJX A;  1GE8 A;  2ZVL A;  3GGR B;  3V61 B;  3FDS D;  3IFV A;  1AXC A;  1U7B A;  2NTI C;  3GGR A;  3A1J B;  5IWD A;  2IX2 B;  2Z0L A;  3A1J A;  4RJF A;  2IX2 A;  2IZO C;  2OD8 A;  3GPN A;  1UD9 A;  3G65 B;  1IZ4 A;  2ZVK A;  3G65 A;  2NTI B;  3HSL X;  1B8H A;  2NTI A;  3TBL A;  2IZO B;  3K4X A;  3WGW A;  3I2M X;  2IO4 B;  3AIZ C;  4D2G A;  3A2F B;  1W60 A;  5E0T A;  5B7O A;  4YHR A;  3LX2 A;  5JNE D;  1DML A;  5E0V A;  3V60 B;  1RXM A;  5DA7 A;  4HK1 A;  3U5Z F;  5HAC A;  1YYP A;  3HI8 A;  2HII C;  4CS5 A;  1PLQ A;  2ZVV A;  3FDS C;  4L60 A;  2HIK C;  5A6D A;  3P87 A;  4ZTD A;  1U76 A;  1PLR A;  4L6P A;  3V62 B; 
#chains in the Genus database with same CATH topology
 2HII B;  3VKX A;  1VYJ A;  2IO4 A;  2AWA A;  3U60 F;  1IZ5 A;  1UL1 A;  2HII A;  3AIX B;  1T6L A;  2AVT A;  1CZD A;  2HIK B;  2HIK A;  2ZVW A;  3P83 A;  3AIZ A;  3LX1 A;  5E0U A;  1RWZ A;  5CFK A;  5IXA A;  5H0T A;  3U61 F;  1ISQ A;  1RXZ A;  5IY4 A;  3F1W A;  3GGR C;  3A1J C;  1SXJ F;  1B77 A;  3AIX A;  1VYM A;  2IX2 C;  3GPM A;  5DAI A;  4TR6 A;  2ZVM A;  3G65 C;  3P91 A;  5AUJ A;  2IJX A;  1GE8 A;  2ZVL A;  3GGR B;  3V61 B;  3FDS D;  3IFV A;  1AXC A;  1U7B A;  2NTI C;  3GGR A;  3A1J B;  5IWD A;  2IX2 B;  2Z0L A;  3A1J A;  4RJF A;  2IX2 A;  2IZO C;  2OD8 A;  3GPN A;  1UD9 A;  3G65 B;  1IZ4 A;  2ZVK A;  3G65 A;  2NTI B;  3HSL X;  1B8H A;  2NTI A;  3TBL A;  2IZO B;  3K4X A;  3WGW A;  3I2M X;  2IO4 B;  3AIZ C;  4D2G A;  3A2F B;  1W60 A;  5E0T A;  5B7O A;  4YHR A;  3LX2 A;  5JNE D;  1DML A;  5E0V A;  3V60 B;  1RXM A;  5DA7 A;  4HK1 A;  3U5Z F;  5HAC A;  1YYP A;  3HI8 A;  2HII C;  4CS5 A;  1PLQ A;  2ZVV A;  3FDS C;  4L60 A;  2HIK C;  5A6D A;  3P87 A;  4ZTD A;  1U76 A;  1PLR A;  4L6P A;  3V62 B; 
#chains in the Genus database with same CATH homology
 2HII B;  3VKX A;  1VYJ A;  2IO4 A;  2AWA A;  3U60 F;  1IZ5 A;  1UL1 A;  2HII A;  3AIX B;  1T6L A;  2AVT A;  1CZD A;  2HIK B;  2HIK A;  2ZVW A;  3P83 A;  3AIZ A;  3LX1 A;  5E0U A;  1RWZ A;  5CFK A;  5IXA A;  5H0T A;  3U61 F;  1ISQ A;  1RXZ A;  5IY4 A;  3F1W A;  3GGR C;  3A1J C;  1SXJ F;  1B77 A;  3AIX A;  1VYM A;  2IX2 C;  3GPM A;  5DAI A;  4TR6 A;  2ZVM A;  3G65 C;  3P91 A;  5AUJ A;  2IJX A;  1GE8 A;  2ZVL A;  3GGR B;  3V61 B;  3FDS D;  3IFV A;  1AXC A;  1U7B A;  2NTI C;  3GGR A;  3A1J B;  5IWD A;  2IX2 B;  2Z0L A;  3A1J A;  4RJF A;  2IX2 A;  2IZO C;  2OD8 A;  3GPN A;  1UD9 A;  3G65 B;  1IZ4 A;  2ZVK A;  3G65 A;  2NTI B;  3HSL X;  1B8H A;  2NTI A;  3TBL A;  2IZO B;  3K4X A;  3WGW A;  3I2M X;  2IO4 B;  3AIZ C;  4D2G A;  3A2F B;  1W60 A;  5E0T A;  5B7O A;  4YHR A;  3LX2 A;  5JNE D;  1DML A;  5E0V A;  3V60 B;  1RXM A;  5DA7 A;  4HK1 A;  3U5Z F;  5HAC A;  1YYP A;  3HI8 A;  2HII C;  4CS5 A;  1PLQ A;  2ZVV A;  3FDS C;  4L60 A;  2HIK C;  5A6D A;  3P87 A;  4ZTD A;  1U76 A;  1PLR A;  4L6P A;  3V62 B; 
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