2W77A

Structures of p. aeruginosa fpva bound to heterologous pyoverdines: fpva-pvd(pfl18.1)-fe complex
Total Genus 230
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
230
sequence length
772
structure length
772
Chain Sequence
QEVEFDIPPQALGSALQEFGRQADIQVLYRPEEVRNKRSSAIKGKLEPNQAITELLRGTGASVDFQGNAITISVAEAADSSVDLGATMITSNQLGTITEDSGSYTPGTIATATRLVLTPRETPQSITVVTRQNMDDFGLNNIDDVMRHTPGITVSAYDTDRNNYYARGFSINNFQYDGIPSTARNVGYSAGNTLSDMAIYDRVEVLKGATGLLTGAGSLGATINLIRKKPTHEFKGHVELGAGSWDNYRSELDVSGPLTESGNVRGRAVAAYQDKHSFMDHYERKTSVYYGILEFDLNPDTMLTVGADYQDNDPKGSGWSGSFPLFDSQGNRNDVSRSFNNGAKWSSWEQYTRTVFANLEHNFANGWVGKVQLDHKINGYHAPLGAIMGDWPAPDNSAKIVAQKYTGETKSNSLDIYLTGPFQFLGREHELVVGTSASFSHWEGKSYWNLRNYDNTTDDFINWDGDIGKPDWGTPSQYIDDKTRQLGSYMTARFNVTDDLNLFLGGRVVDYRVTGLNPTIRESGRFIPYVGAVYDLNDTYSVYASYTDIFMPQDSWYRDSSNKLLEPDEGQNYEIGIKGEYLDGRLNTSLAYFEIHEENRAEEDALYNSKPTNPAITYAYKGIKAKTKGYEAEISGELAPGWQVQAGYTHKIIRDDSGKKVSTWEPQDQLSLYTSYKFKGALDKLTVGGGARWQGKSWQMVYNNPRSRWEKFSQEDYWLVDLMARYQITDKLSASVNVNNVFDKTYYTNIGFYTSASYGDPRNLMFSTRWDF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Fpva Bound to Non-Cognate Pyoverdines: Molecular Basis of Siderophore Recognition by an Iron Transporter.
pubmed doi rcsb
molecule keywords FERRIPYOVERDINE RECEPTOR
molecule tags Receptor
source organism Pseudomonas aeruginosa
total genus 230
structure length 772
sequence length 772
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-12-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00593 TonB_dep_Rec TonB dependent receptor
A PF07660 STN Secretin and TonB N terminus short domain
A PF07715 Plug TonB-dependent Receptor Plug Domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.20 Mainly Beta Beta Barrel Maltoporin; Chain A TonB-dependent receptor, beta-barrel domain 2w77A03
2.170.130.10 Mainly Beta Beta Complex Ferric Hydroxamate Uptake Protein; Chain A, domain 1 TonB-dependent receptor, plug domain 2w77A02
3.55.50.30 Alpha Beta 3-Layer(bab) Sandwich Phage tail protein beta-alpha-beta fold Phage tail protein beta-alpha-beta fold 2w77A01
4B7OA 4AIPA 2W6UA 1QFGA 2HDIA 2HDFA 1PO3A 1XKHA 2GRXA 2W75A 2W77A 4RDTA 3RGMA 1ZZVA 3V8XA 2A02A 4RDRA 1FCPA 2GUFA 2W6TA 1BY3A 1FI1A 3QLBA 1QFFA 1PO0A 1NQFA 1FEPA 3M8DA 2D1UA 1BY5A 2IAHA 3CSLA 4AR0A 4G08A 5FOKA 1NQGA 3EZJA 2YSUA 3CSNA 3V89A 1KMPA 2M5JA 3DDRA 4AIQA 3M8BA 2W78A 4JTMA 4M0NA 1KMOA 2GSKA 1UJWA 2O5PA 3RGNA 4EPAA 4CU4A 3GR5A 3FHHA 1PNZA 1XKWA 3EFMA 4M0HA 1QJQA 2FCPA 1NQHA 2W16A 1NQEA 1QKCA 2W76A
chains in the Genus database with same CATH superfamily
4B7OA 4AIPA 1A0SP 2GRXA 3RGMA 1WTHD 1JBIA 3D37A 1PO0A 1FEPA 5FOKA 1MPRA 4AIQA 1UJWA 3CDDA 1WRUA 2FCPA 2W16A 1PO3A 2W77A 4RDRA 1FI1A 1MPQA 1QFFA 1NQFA 1OH2Q 2P5ZX 1NQGA 2YSUA 3DDRA 3M8BA 2GSKA 4EPAA 3GR5A 3FHHA 1PNZA 1XKWA 3EFMA 2Z6BD 4M0HA 1QKCA 2W6UA 1QFGA 1K28D 2HDIA 2W75A 2L4WA 2GUFA 1MPMA 2W6TA 2D1UA 1BY5A 2IAHA 3CSLA 4AR0A 3EZJA 2MPRA 2M5JA 4M0NA 1KMOA 1MALA 4MTKA 3ADYA 3OV5A 1QJQA 1NQHA 1NQEA 1FCPA 4JTMA 2W76A 2WZPR 1XKHA 2HDFA 4RDTA 1ZZVA 3V8XA 2A02A 1BY3A 3QLBA 1AF6A 3GS9A 3M8DA 4G08A 1KMPA 3CSNA 3V89A 2W78A 2O5PA 3RGNA 1A0TP 4UHVA 4CU4A 1OH2P 1MPNA 2X531 1MPOA
chains in the Genus database with same CATH topology
4B7OA 4AIPA 2GRXA 3RGMA 1WTHD 1PO0A 1FEPA 5FOKA 4AIQA 1UJWA 2FCPA 2W16A 1PO3A 2W77A 4RDRA 1FI1A 1QFFA 1NQFA 1NQGA 2YSUA 3DDRA 3M8BA 2GSKA 4EPAA 3GR5A 3FHHA 1PNZA 1XKWA 3EFMA 2Z6BD 4M0HA 1QKCA 2W6UA 1QFGA 1K28D 2HDIA 2W75A 2L4WA 2GUFA 2W6TA 2D1UA 1BY5A 2IAHA 3CSLA 4AR0A 3EZJA 2M5JA 4M0NA 1KMOA 3ADYA 3OV5A 1QJQA 1NQHA 4JTMA 1FCPA 1NQEA 2W76A 2WZPR 1XKHA 2HDFA 4RDTA 1ZZVA 3V8XA 2A02A 1BY3A 3QLBA 3GS9A 3M8DA 4G08A 1KMPA 3CSNA 3V89A 2W78A 2O5PA 3RGNA 4CU4A 2X531
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4B7O A;  4AIP A;  2W6U A;  1QFG A;  2HDI A;  2HDF A;  1PO3 A;  1XKH A;  2GRX A;  2W75 A;  2W77 A;  4RDT A;  3RGM A;  1ZZV A;  3V8X A;  2A02 A;  4RDR A;  1FCP A;  2GUF A;  2W6T A;  1BY3 A;  1FI1 A;  3QLB A;  1QFF A;  1PO0 A;  1NQF A;  1FEP A;  3M8D A;  2D1U A;  1BY5 A;  2IAH A;  3CSL A;  4AR0 A;  4G08 A;  5FOK A;  1NQG A;  3EZJ A;  2YSU A;  3CSN A;  3V89 A;  1KMP A;  2M5J A;  3DDR A;  4AIQ A;  3M8B A;  2W78 A;  4JTM A;  4M0N A;  1KMO A;  2GSK A;  1UJW A;  2O5P A;  3RGN A;  4EPA A;  4CU4 A;  3GR5 A;  3FHH A;  1PNZ A;  1XKW A;  3EFM A;  4M0H A;  1QJQ A;  2FCP A;  1NQH A;  2W16 A;  1NQE A;  1QKC A;  2W76 A; 
#chains in the Genus database with same CATH topology
 4B7O A;  4AIP A;  1A0S P;  2GRX A;  3RGM A;  1WTH D;  1JBI A;  3D37 A;  1PO0 A;  1FEP A;  5FOK A;  1MPR A;  4AIQ A;  1UJW A;  3CDD A;  1WRU A;  2FCP A;  2W16 A;  1PO3 A;  2W77 A;  4RDR A;  1FI1 A;  1MPQ A;  1QFF A;  1NQF A;  1OH2 Q;  2P5Z X;  1NQG A;  2YSU A;  3DDR A;  3M8B A;  2GSK A;  4EPA A;  3GR5 A;  3FHH A;  1PNZ A;  1XKW A;  3EFM A;  2Z6B D;  4M0H A;  1QKC A;  2W6U A;  1QFG A;  1K28 D;  2HDI A;  2W75 A;  2L4W A;  2GUF A;  1MPM A;  2W6T A;  2D1U A;  1BY5 A;  2IAH A;  3CSL A;  4AR0 A;  3EZJ A;  2MPR A;  2M5J A;  4M0N A;  1KMO A;  1MAL A;  4MTK A;  3ADY A;  3OV5 A;  1QJQ A;  1NQH A;  1NQE A;  1FCP A;  4JTM A;  2W76 A;  2WZP R;  1XKH A;  2HDF A;  4RDT A;  1ZZV A;  3V8X A;  2A02 A;  1BY3 A;  3QLB A;  1AF6 A;  3GS9 A;  3M8D A;  4G08 A;  1KMP A;  3CSN A;  3V89 A;  2W78 A;  2O5P A;  3RGN A;  1A0T P;  4UHV A;  4CU4 A;  1OH2 P;  1MPN A;  2X53 1;  1MPO A; 
#chains in the Genus database with same CATH homology
 4B7O A;  4AIP A;  2GRX A;  3RGM A;  1WTH D;  1PO0 A;  1FEP A;  5FOK A;  4AIQ A;  1UJW A;  2FCP A;  2W16 A;  1PO3 A;  2W77 A;  4RDR A;  1FI1 A;  1QFF A;  1NQF A;  1NQG A;  2YSU A;  3DDR A;  3M8B A;  2GSK A;  4EPA A;  3GR5 A;  3FHH A;  1PNZ A;  1XKW A;  3EFM A;  2Z6B D;  4M0H A;  1QKC A;  2W6U A;  1QFG A;  1K28 D;  2HDI A;  2W75 A;  2L4W A;  2GUF A;  2W6T A;  2D1U A;  1BY5 A;  2IAH A;  3CSL A;  4AR0 A;  3EZJ A;  2M5J A;  4M0N A;  1KMO A;  3ADY A;  3OV5 A;  1QJQ A;  1NQH A;  4JTM A;  1FCP A;  1NQE A;  2W76 A;  2WZP R;  1XKH A;  2HDF A;  4RDT A;  1ZZV A;  3V8X A;  2A02 A;  1BY3 A;  3QLB A;  3GS9 A;  3M8D A;  4G08 A;  1KMP A;  3CSN A;  3V89 A;  2W78 A;  2O5P A;  3RGN A;  4CU4 A;  2X53 1; 
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