2W78A

Structures of p. aeruginosa fpva bound to heterologous pyoverdines: fpva-pvd(atcc13535)-fe complex
Total Genus 229
100200300400500600700050100150200
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
229
sequence length
772
structure length
772
Chain Sequence
QEVEFDIPPQALGSALQEFGRQADIQVLYRPEEVRNKRSSAIKGKLEPNQAITELLRGTGASVDFQGNAITISVAEAADSSVDLGATMITSNQLGTITEDSGSYTPGTIATATRLVLTPRETPQSITVVTRQNMDDFGLNNIDDVMRHTPGITVSAYDTDRNNYYARGFSINNFQYDGIPSTARNVGYSAGNTLSDMAIYDRVEVLKGATGLLTGAGSLGATINLIRKKPTHEFKGHVELGAGSWDNYRSELDVSGPLTESGNVRGRAVAAYQDKHSFMDHYERKTSVYYGILEFDLNPDTMLTVGADYQDNDPKGSGWSGSFPLFDSQGNRNDVSRSFNNGAKWSSWEQYTRTVFANLEHNFANGWVGKVQLDHKINGYHAPLGAIMGDWPAPDNSAKIVAQKYTGETKSNSLDIYLTGPFQFLGREHELVVGTSASFSHWEGKSYWNLRNYDNTTDDFINWDGDIGKPDWGTPSQYIDDKTRQLGSYMTARFNVTDDLNLFLGGRVVDYRVTGLNPTIRESGRFIPYVGAVYDLNDTYSVYASYTDIFMPQDSWYRDSSNKLLEPDEGQNYEIGIKGEYLDGRLNTSLAYFEIHEENRAEEDALYNSKPTNPAITYAYKGIKAKTKGYEAEISGELAPGWQVQAGYTHKIIRDDSGKKVSTWEPQDQLSLYTSYKFKGALDKLTVGGGARWQGKSWQMVYNNPRSRWEKFSQEDYWLVDLMARYQITDKLSASVNVNNVFDKTYYTNIGFYTSASYGDPRNLMFSTRWDF
100200300400500600700700600500400300200100
050100150200Genus Matrix

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Receptor
source organism Pseudomonas aeruginosa
publication title Fpva Bound to Non-Cognate Pyoverdines: Molecular Basis of Siderophore Recognition by an Iron Transporter.
pubmed doi rcsb
molecule keywords FERRIPYOVERDINE RECEPTOR
total genus 229
structure length 772
sequence length 772
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-12-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00593 TonB_dep_Rec TonB dependent receptor
A PF07660 STN Secretin and TonB N terminus short domain
A PF07715 Plug TonB-dependent Receptor Plug Domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.20 Mainly Beta Beta Barrel Maltoporin; Chain A TonB-dependent receptor, beta-barrel domain 2w78A03
2.170.130.10 Mainly Beta Beta Complex Ferric Hydroxamate Uptake Protein; Chain A, domain 1 TonB-dependent receptor, plug domain 2w78A02
3.55.50.30 Alpha Beta 3-Layer(bab) Sandwich Phage tail protein beta-alpha-beta fold Phage tail protein beta-alpha-beta fold 2w78A01
1PO3A 3GR5A 3EFMA 3CSLA 2W6TA 1PO0A 3M8DA 1KMOA 2W75A 2HDIA 4AR0A 3V8XA 1QFFA 2GUFA 2D1UA 3FHHA 1XKWA 4G08A 1FCPA 3RGNA 3CSNA 2GSKA 1UJWA 2W78A 4RDRA 2W76A 1NQHA 2IAHA 1FI1A 2M5JA 1PNZA 4M0HA 1BY3A 4AIQA 1KMPA 4JTMA 3EZJA 2W6UA 5FOKA 1NQFA 2HDFA 3QLBA 3V89A 4CU4A 2W16A 1NQEA 1QJQA 3DDRA 1NQGA 2A02A 2O5PA 2W77A 1QKCA 1QFGA 3M8BA 4B7OA 2GRXA 2FCPA 1ZZVA 2YSUA 4AIPA 3RGMA 1XKHA 4RDTA 1BY5A 4EPAA 1FEPA 4M0NA
chains in the Genus database with same CATH superfamily
1WRUA 1KMOA 2W75A 2P5ZX 2L4WA 2D1UA 3D37A 2W76A 1NQHA 2IAHA 1FI1A 1MPNA 1BY3A 1A0SP 4JTMA 2W6UA 5FOKA 1NQFA 3QLBA 1NQEA 1OH2Q 2A02A 2O5PA 2W77A 4B7OA 2GRXA 2WZPR 4EPAA 1MPQA 3EFMA 3CSLA 2W6TA 2HDIA 2MPRA 1QFFA 3RGNA 1UJWA 2GSKA 2W78A 1KMPA 3EZJA 1MALA 4CU4A 1MPOA 1QKCA 1QFGA 4MTKA 2YSUA 3RGMA 4RDTA 1PO3A 1A0TP 3GS9A 3V8XA 3CDDA 2GUFA 1WTHD 1MPMA 3FHHA 4G08A 1FCPA 4RDRA 2Z6BD 2M5JA 4M0HA 1PNZA 1AF6A 2W16A 1QJQA 3DDRA 1NQGA 1MPRA 3ADYA 2FCPA 3GR5A 3M8BA 4M0NA 1OH2P 4UHVA 1PO0A 3M8DA 4AR0A 1XKWA 3CSNA 3OV5A 4AIQA 2X531 1JBIA 2HDFA 3V89A 1K28D 1ZZVA 4AIPA 1XKHA 1BY5A 1FEPA
chains in the Genus database with same CATH topology
1KMOA 2W75A 2L4WA 2D1UA 2W76A 1NQHA 2IAHA 1FI1A 1BY3A 4JTMA 2W6UA 5FOKA 1NQFA 3QLBA 1NQEA 2A02A 2O5PA 2W77A 4B7OA 2GRXA 2WZPR 4EPAA 3EFMA 3CSLA 2W6TA 2HDIA 1QFFA 3RGNA 1UJWA 2GSKA 2W78A 1KMPA 3EZJA 4CU4A 1QKCA 1QFGA 2YSUA 3RGMA 4RDTA 1PO3A 3GS9A 3V8XA 2GUFA 1WTHD 3FHHA 4G08A 1FCPA 4RDRA 2Z6BD 2M5JA 4M0HA 1PNZA 2W16A 1QJQA 3DDRA 1NQGA 3ADYA 2FCPA 3GR5A 3M8BA 4M0NA 1PO0A 3M8DA 4AR0A 1XKWA 3CSNA 3OV5A 4AIQA 2X531 2HDFA 3V89A 1K28D 1ZZVA 4AIPA 1XKHA 1BY5A 1FEPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PO3 A;  3GR5 A;  3EFM A;  3CSL A;  2W6T A;  1PO0 A;  3M8D A;  1KMO A;  2W75 A;  2HDI A;  4AR0 A;  3V8X A;  1QFF A;  2GUF A;  2D1U A;  3FHH A;  1XKW A;  4G08 A;  1FCP A;  3RGN A;  3CSN A;  2GSK A;  1UJW A;  2W78 A;  4RDR A;  2W76 A;  1NQH A;  2IAH A;  1FI1 A;  2M5J A;  1PNZ A;  4M0H A;  1BY3 A;  4AIQ A;  1KMP A;  4JTM A;  3EZJ A;  2W6U A;  5FOK A;  1NQF A;  2HDF A;  3QLB A;  3V89 A;  4CU4 A;  2W16 A;  1NQE A;  1QJQ A;  3DDR A;  1NQG A;  2A02 A;  2O5P A;  2W77 A;  1QKC A;  1QFG A;  3M8B A;  4B7O A;  2GRX A;  2FCP A;  1ZZV A;  2YSU A;  4AIP A;  3RGM A;  1XKH A;  4RDT A;  1BY5 A;  4EPA A;  1FEP A;  4M0N A; 
#chains in the Genus database with same CATH topology
 1WRU A;  1KMO A;  2W75 A;  2P5Z X;  2L4W A;  2D1U A;  3D37 A;  2W76 A;  1NQH A;  2IAH A;  1FI1 A;  1MPN A;  1BY3 A;  1A0S P;  4JTM A;  2W6U A;  5FOK A;  1NQF A;  3QLB A;  1NQE A;  1OH2 Q;  2A02 A;  2O5P A;  2W77 A;  4B7O A;  2GRX A;  2WZP R;  4EPA A;  1MPQ A;  3EFM A;  3CSL A;  2W6T A;  2HDI A;  2MPR A;  1QFF A;  3RGN A;  1UJW A;  2GSK A;  2W78 A;  1KMP A;  3EZJ A;  1MAL A;  4CU4 A;  1MPO A;  1QKC A;  1QFG A;  4MTK A;  2YSU A;  3RGM A;  4RDT A;  1PO3 A;  1A0T P;  3GS9 A;  3V8X A;  3CDD A;  2GUF A;  1WTH D;  1MPM A;  3FHH A;  4G08 A;  1FCP A;  4RDR A;  2Z6B D;  2M5J A;  4M0H A;  1PNZ A;  1AF6 A;  2W16 A;  1QJQ A;  3DDR A;  1NQG A;  1MPR A;  3ADY A;  2FCP A;  3GR5 A;  3M8B A;  4M0N A;  1OH2 P;  4UHV A;  1PO0 A;  3M8D A;  4AR0 A;  1XKW A;  3CSN A;  3OV5 A;  4AIQ A;  2X53 1;  1JBI A;  2HDF A;  3V89 A;  1K28 D;  1ZZV A;  4AIP A;  1XKH A;  1BY5 A;  1FEP A; 
#chains in the Genus database with same CATH homology
 1KMO A;  2W75 A;  2L4W A;  2D1U A;  2W76 A;  1NQH A;  2IAH A;  1FI1 A;  1BY3 A;  4JTM A;  2W6U A;  5FOK A;  1NQF A;  3QLB A;  1NQE A;  2A02 A;  2O5P A;  2W77 A;  4B7O A;  2GRX A;  2WZP R;  4EPA A;  3EFM A;  3CSL A;  2W6T A;  2HDI A;  1QFF A;  3RGN A;  1UJW A;  2GSK A;  2W78 A;  1KMP A;  3EZJ A;  4CU4 A;  1QKC A;  1QFG A;  2YSU A;  3RGM A;  4RDT A;  1PO3 A;  3GS9 A;  3V8X A;  2GUF A;  1WTH D;  3FHH A;  4G08 A;  1FCP A;  4RDR A;  2Z6B D;  2M5J A;  4M0H A;  1PNZ A;  2W16 A;  1QJQ A;  3DDR A;  1NQG A;  3ADY A;  2FCP A;  3GR5 A;  3M8B A;  4M0N A;  1PO0 A;  3M8D A;  4AR0 A;  1XKW A;  3CSN A;  3OV5 A;  4AIQ A;  2X53 1;  2HDF A;  3V89 A;  1K28 D;  1ZZV A;  4AIP A;  1XKH A;  1BY5 A;  1FEP A; 
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