3A1JC

Crystal structure of the human rad9-hus1-rad1 complex
Total Genus 57
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
263
structure length
263
Chain Sequence
DQYSLVASLDNVRNLSTILKAIHFREHATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFKVQEESVTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLMLFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEVLQITMSPDKPYFRLSTFGNAGSSHLDYPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVLSCKVSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPDE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Crystal Structure of the Human Rad9-Hus1-Rad1 Clamp
pubmed doi rcsb
molecule tags Hydrolase/cell cycle
source organism Homo sapiens
molecule keywords Cell cycle checkpoint control protein RAD9A
total genus 57
structure length 263
sequence length 263
ec nomenclature ec 3.1.11.2: Exodeoxyribonuclease III.
pdb deposition date 2009-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02144 Rad1 Repair protein Rad1/Rec1/Rad17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3a1jC00
3LX2A 5B7OA 1DMLA 1U7BA 4D2GA 2NTIC 2ZVKA 2Z0LA 3U60F 3A1JB 3GPMA 4L60A 2IX2B 5JNED 2OD8A 5H0TA 2HIKA 3GGRB 4CS5A 1B8HA 2ZVWA 2HIIA 3G65A 1U76A 3U5ZF 3I2MX 5IWDA 2ZVLA 3LX1A 1AXCA 3V60B 5IXAA 3P87A 2IX2C 4TR6A 3F1WA 5E0UA 1UD9A 1YYPA 3GPNA 3GGRC 2IZOC 4ZTDA 3U61F 3HSLX 3AIXA 5A6DA 3K4XA 3V62B 2ZVMA 1RWZA 1IZ4A 2HIIB 3V61B 4L6PA 1VYMA 3A1JC 1IZ5A 5DA7A 2AVTA 1PLQA 1RXZA 4HK1A 3A2FB 3AIZC 1CZDA 5E0VA 2IO4A 2NTIA 5IY4A 3AIXB 3P91A 5CFKA 3VKXA 1ISQA 4RJFA 1RXMA 2HIKB 2IJXA 1SXJF 4YHRA 3G65B 3FDSC 1GE8A 1UL1A 3TBLA 5DAIA 1PLRA 5E0TA 2ZVVA 2AWAA 3FDSD 3HI8A 1VYJA 3A1JA 1B77A 3P83A 2IX2A 2HIKC 3GGRA 5AUJA 3IFVA 2HIIC 2IZOB 3AIZA 3G65C 2IO4B 2NTIB 1T6LA 3WGWA 5HACA 1W60A
chains in the Genus database with same CATH superfamily
3LX2A 5B7OA 1DMLA 1U7BA 4D2GA 2NTIC 2ZVKA 2Z0LA 3U60F 3A1JB 3GPMA 4L60A 2IX2B 5JNED 2OD8A 5H0TA 2HIKA 3GGRB 4CS5A 1B8HA 2ZVWA 2HIIA 3G65A 1U76A 3U5ZF 3I2MX 5IWDA 2ZVLA 3LX1A 1AXCA 3V60B 5IXAA 3P87A 2IX2C 4TR6A 3F1WA 5E0UA 1UD9A 1YYPA 3GPNA 3GGRC 2IZOC 4ZTDA 3U61F 3HSLX 3AIXA 5A6DA 3K4XA 3V62B 2ZVMA 1RWZA 1IZ4A 2HIIB 3V61B 4L6PA 1VYMA 3A1JC 1IZ5A 5DA7A 2AVTA 1PLQA 1RXZA 4HK1A 3A2FB 3AIZC 1CZDA 5E0VA 2IO4A 2NTIA 5IY4A 3AIXB 3P91A 5CFKA 3VKXA 1ISQA 4RJFA 1RXMA 2HIKB 2IJXA 1SXJF 4YHRA 3G65B 3FDSC 1GE8A 1UL1A 3TBLA 5DAIA 1PLRA 5E0TA 2ZVVA 2AWAA 3FDSD 3HI8A 1VYJA 3A1JA 1B77A 3P83A 2IX2A 2HIKC 3GGRA 5AUJA 3IFVA 2HIIC 2IZOB 3AIZA 3G65C 2IO4B 2NTIB 1T6LA 3WGWA 5HACA 1W60A
chains in the Genus database with same CATH topology
3LX2A 5B7OA 1DMLA 1U7BA 4D2GA 2NTIC 2ZVKA 2Z0LA 3U60F 3A1JB 3GPMA 4L60A 2IX2B 5JNED 2OD8A 5H0TA 2HIKA 3GGRB 4CS5A 1B8HA 2ZVWA 2HIIA 3G65A 1U76A 3U5ZF 3I2MX 5IWDA 2ZVLA 3LX1A 1AXCA 3V60B 5IXAA 3P87A 2IX2C 4TR6A 3F1WA 5E0UA 1UD9A 1YYPA 3GPNA 3GGRC 2IZOC 4ZTDA 3U61F 3HSLX 3AIXA 5A6DA 3K4XA 3V62B 2ZVMA 1RWZA 1IZ4A 2HIIB 3V61B 4L6PA 1VYMA 3A1JC 1IZ5A 5DA7A 2AVTA 1PLQA 1RXZA 4HK1A 3A2FB 3AIZC 1CZDA 5E0VA 2IO4A 2NTIA 5IY4A 3AIXB 3P91A 5CFKA 3VKXA 1ISQA 4RJFA 1RXMA 2HIKB 2IJXA 1SXJF 4YHRA 3G65B 3FDSC 1GE8A 1UL1A 3TBLA 5DAIA 1PLRA 5E0TA 2ZVVA 2AWAA 3FDSD 3HI8A 1VYJA 3A1JA 1B77A 3P83A 2IX2A 2HIKC 3GGRA 5AUJA 3IFVA 2HIIC 2IZOB 3AIZA 3G65C 2IO4B 2NTIB 1T6LA 3WGWA 5HACA 1W60A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LX2 A;  5B7O A;  1DML A;  1U7B A;  4D2G A;  2NTI C;  2ZVK A;  2Z0L A;  3U60 F;  3A1J B;  3GPM A;  4L60 A;  2IX2 B;  5JNE D;  2OD8 A;  5H0T A;  2HIK A;  3GGR B;  4CS5 A;  1B8H A;  2ZVW A;  2HII A;  3G65 A;  1U76 A;  3U5Z F;  3I2M X;  5IWD A;  2ZVL A;  3LX1 A;  1AXC A;  3V60 B;  5IXA A;  3P87 A;  2IX2 C;  4TR6 A;  3F1W A;  5E0U A;  1UD9 A;  1YYP A;  3GPN A;  3GGR C;  2IZO C;  4ZTD A;  3U61 F;  3HSL X;  3AIX A;  5A6D A;  3K4X A;  3V62 B;  2ZVM A;  1RWZ A;  1IZ4 A;  2HII B;  3V61 B;  4L6P A;  1VYM A;  3A1J C;  1IZ5 A;  5DA7 A;  2AVT A;  1PLQ A;  1RXZ A;  4HK1 A;  3A2F B;  3AIZ C;  1CZD A;  5E0V A;  2IO4 A;  2NTI A;  5IY4 A;  3AIX B;  3P91 A;  5CFK A;  3VKX A;  1ISQ A;  4RJF A;  1RXM A;  2HIK B;  2IJX A;  1SXJ F;  4YHR A;  3G65 B;  3FDS C;  1GE8 A;  1UL1 A;  3TBL A;  5DAI A;  1PLR A;  5E0T A;  2ZVV A;  2AWA A;  3FDS D;  3HI8 A;  1VYJ A;  3A1J A;  1B77 A;  3P83 A;  2IX2 A;  2HIK C;  3GGR A;  5AUJ A;  3IFV A;  2HII C;  2IZO B;  3AIZ A;  3G65 C;  2IO4 B;  2NTI B;  1T6L A;  3WGW A;  5HAC A;  1W60 A; 
#chains in the Genus database with same CATH topology
 3LX2 A;  5B7O A;  1DML A;  1U7B A;  4D2G A;  2NTI C;  2ZVK A;  2Z0L A;  3U60 F;  3A1J B;  3GPM A;  4L60 A;  2IX2 B;  5JNE D;  2OD8 A;  5H0T A;  2HIK A;  3GGR B;  4CS5 A;  1B8H A;  2ZVW A;  2HII A;  3G65 A;  1U76 A;  3U5Z F;  3I2M X;  5IWD A;  2ZVL A;  3LX1 A;  1AXC A;  3V60 B;  5IXA A;  3P87 A;  2IX2 C;  4TR6 A;  3F1W A;  5E0U A;  1UD9 A;  1YYP A;  3GPN A;  3GGR C;  2IZO C;  4ZTD A;  3U61 F;  3HSL X;  3AIX A;  5A6D A;  3K4X A;  3V62 B;  2ZVM A;  1RWZ A;  1IZ4 A;  2HII B;  3V61 B;  4L6P A;  1VYM A;  3A1J C;  1IZ5 A;  5DA7 A;  2AVT A;  1PLQ A;  1RXZ A;  4HK1 A;  3A2F B;  3AIZ C;  1CZD A;  5E0V A;  2IO4 A;  2NTI A;  5IY4 A;  3AIX B;  3P91 A;  5CFK A;  3VKX A;  1ISQ A;  4RJF A;  1RXM A;  2HIK B;  2IJX A;  1SXJ F;  4YHR A;  3G65 B;  3FDS C;  1GE8 A;  1UL1 A;  3TBL A;  5DAI A;  1PLR A;  5E0T A;  2ZVV A;  2AWA A;  3FDS D;  3HI8 A;  1VYJ A;  3A1J A;  1B77 A;  3P83 A;  2IX2 A;  2HIK C;  3GGR A;  5AUJ A;  3IFV A;  2HII C;  2IZO B;  3AIZ A;  3G65 C;  2IO4 B;  2NTI B;  1T6L A;  3WGW A;  5HAC A;  1W60 A; 
#chains in the Genus database with same CATH homology
 3LX2 A;  5B7O A;  1DML A;  1U7B A;  4D2G A;  2NTI C;  2ZVK A;  2Z0L A;  3U60 F;  3A1J B;  3GPM A;  4L60 A;  2IX2 B;  5JNE D;  2OD8 A;  5H0T A;  2HIK A;  3GGR B;  4CS5 A;  1B8H A;  2ZVW A;  2HII A;  3G65 A;  1U76 A;  3U5Z F;  3I2M X;  5IWD A;  2ZVL A;  3LX1 A;  1AXC A;  3V60 B;  5IXA A;  3P87 A;  2IX2 C;  4TR6 A;  3F1W A;  5E0U A;  1UD9 A;  1YYP A;  3GPN A;  3GGR C;  2IZO C;  4ZTD A;  3U61 F;  3HSL X;  3AIX A;  5A6D A;  3K4X A;  3V62 B;  2ZVM A;  1RWZ A;  1IZ4 A;  2HII B;  3V61 B;  4L6P A;  1VYM A;  3A1J C;  1IZ5 A;  5DA7 A;  2AVT A;  1PLQ A;  1RXZ A;  4HK1 A;  3A2F B;  3AIZ C;  1CZD A;  5E0V A;  2IO4 A;  2NTI A;  5IY4 A;  3AIX B;  3P91 A;  5CFK A;  3VKX A;  1ISQ A;  4RJF A;  1RXM A;  2HIK B;  2IJX A;  1SXJ F;  4YHR A;  3G65 B;  3FDS C;  1GE8 A;  1UL1 A;  3TBL A;  5DAI A;  1PLR A;  5E0T A;  2ZVV A;  2AWA A;  3FDS D;  3HI8 A;  1VYJ A;  3A1J A;  1B77 A;  3P83 A;  2IX2 A;  2HIK C;  3GGR A;  5AUJ A;  3IFV A;  2HII C;  2IZO B;  3AIZ A;  3G65 C;  2IO4 B;  2NTI B;  1T6L A;  3WGW A;  5HAC A;  1W60 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...