3A1JC

Crystal structure of the human rad9-hus1-rad1 complex
Total Genus 57
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
57
sequence length
263
structure length
263
Chain Sequence
DQYSLVASLDNVRNLSTILKAIHFREHATCFATKNGIKVTVENAKCVQANAFIQAGIFQEFKVQEESVTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLMLFLEEGGVVTVCKINTQEPEETLDFDFCSTNVINKIILQSEGLREAFSELDMTSEVLQITMSPDKPYFRLSTFGNAGSSHLDYPKDSDLMEAFHCNQTQVNRYKISLLKPSTKALVLSCKVSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPDE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/cell cycle
source organism Homo sapiens
publication title Crystal Structure of the Human Rad9-Hus1-Rad1 Clamp
pubmed doi rcsb
molecule keywords Cell cycle checkpoint control protein RAD9A
total genus 57
structure length 263
sequence length 263
ec nomenclature ec 3.1.11.2: Exodeoxyribonuclease III.
pdb deposition date 2009-04-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02144 Rad1 Repair protein Rad1/Rec1/Rad17
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 3a1jC00
2HIIC 1B8HA 2ZVMA 3GGRA 4D2GA 3IFVA 1PLQA 3FDSD 5H0TA 2IJXA 3V61B 1RXMA 2OD8A 4L6PA 3GPNA 3HSLX 1UL1A 3AIZC 4RJFA 3A1JA 5E0VA 2HIIB 5DAIA 1CZDA 2Z0LA 3AIXA 1SXJF 2NTIC 3LX2A 5HACA 3V62B 3U61F 1U76A 4CS5A 2IO4B 2HIKC 2IZOC 5JNED 1PLRA 1GE8A 5IXAA 3VKXA 1DMLA 3LX1A 3G65C 3V60B 2IX2B 1B77A 4L60A 1YYPA 5IY4A 5DA7A 3P91A 2ZVLA 2ZVKA 3U5ZF 1IZ5A 3GGRC 1ISQA 5E0UA 1VYMA 2IX2A 1RXZA 2AWAA 1U7BA 3A2FB 1VYJA 3I2MX 3A1JC 3U60F 1RWZA 5CFKA 2HIIA 3P83A 1W60A 3F1WA 3GGRB 4ZTDA 2NTIB 5A6DA 5IWDA 2IO4A 5E0TA 1T6LA 2ZVVA 3AIZA 2HIKB 4TR6A 2IZOB 5B7OA 3FDSC 3G65B 3AIXB 2NTIA 4HK1A 3K4XA 2AVTA 2HIKA 1UD9A 3TBLA 2ZVWA 3WGWA 1IZ4A 2IX2C 3G65A 4YHRA 3GPMA 1AXCA 5AUJA 3P87A 3HI8A 3A1JB
chains in the Genus database with same CATH superfamily
2HIIC 1B8HA 2ZVMA 3GGRA 4D2GA 3IFVA 1PLQA 3FDSD 5H0TA 2IJXA 3V61B 1RXMA 2OD8A 4L6PA 3GPNA 3HSLX 1UL1A 3AIZC 4RJFA 3A1JA 5E0VA 2HIIB 5DAIA 1CZDA 2Z0LA 3AIXA 1SXJF 2NTIC 3LX2A 5HACA 3V62B 3U61F 1U76A 4CS5A 2IO4B 2HIKC 2IZOC 5JNED 1PLRA 1GE8A 5IXAA 3VKXA 1DMLA 3LX1A 3G65C 3V60B 2IX2B 1B77A 4L60A 1YYPA 5IY4A 5DA7A 3P91A 2ZVLA 2ZVKA 3U5ZF 1IZ5A 3GGRC 1ISQA 5E0UA 1VYMA 2IX2A 1RXZA 2AWAA 1U7BA 3A2FB 1VYJA 3I2MX 3A1JC 3U60F 1RWZA 5CFKA 2HIIA 3P83A 1W60A 3F1WA 3GGRB 4ZTDA 2NTIB 5A6DA 5IWDA 2IO4A 5E0TA 1T6LA 2ZVVA 3AIZA 2HIKB 4TR6A 2IZOB 5B7OA 3FDSC 3G65B 3AIXB 2NTIA 4HK1A 3K4XA 2AVTA 2HIKA 1UD9A 3TBLA 2ZVWA 3WGWA 1IZ4A 2IX2C 3G65A 4YHRA 3GPMA 1AXCA 5AUJA 3P87A 3HI8A 3A1JB
chains in the Genus database with same CATH topology
2HIIC 1B8HA 2ZVMA 3GGRA 4D2GA 3IFVA 1PLQA 3FDSD 5H0TA 2IJXA 3V61B 1RXMA 2OD8A 4L6PA 3GPNA 3HSLX 1UL1A 3AIZC 4RJFA 3A1JA 5E0VA 2HIIB 5DAIA 1CZDA 2Z0LA 3AIXA 1SXJF 2NTIC 3LX2A 5HACA 3V62B 3U61F 1U76A 4CS5A 2IO4B 2HIKC 2IZOC 5JNED 1PLRA 1GE8A 5IXAA 3VKXA 1DMLA 3LX1A 3G65C 3V60B 2IX2B 1B77A 4L60A 1YYPA 5IY4A 5DA7A 3P91A 2ZVLA 2ZVKA 3U5ZF 1IZ5A 3GGRC 1ISQA 5E0UA 1VYMA 2IX2A 1RXZA 2AWAA 1U7BA 3A2FB 1VYJA 3I2MX 3A1JC 3U60F 1RWZA 5CFKA 2HIIA 3P83A 1W60A 3F1WA 3GGRB 4ZTDA 2NTIB 5A6DA 5IWDA 2IO4A 5E0TA 1T6LA 2ZVVA 3AIZA 2HIKB 4TR6A 2IZOB 5B7OA 3FDSC 3G65B 3AIXB 2NTIA 4HK1A 3K4XA 2AVTA 2HIKA 1UD9A 3TBLA 2ZVWA 3WGWA 1IZ4A 2IX2C 3G65A 4YHRA 3GPMA 1AXCA 5AUJA 3P87A 3HI8A 3A1JB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HII C;  1B8H A;  2ZVM A;  3GGR A;  4D2G A;  3IFV A;  1PLQ A;  3FDS D;  5H0T A;  2IJX A;  3V61 B;  1RXM A;  2OD8 A;  4L6P A;  3GPN A;  3HSL X;  1UL1 A;  3AIZ C;  4RJF A;  3A1J A;  5E0V A;  2HII B;  5DAI A;  1CZD A;  2Z0L A;  3AIX A;  1SXJ F;  2NTI C;  3LX2 A;  5HAC A;  3V62 B;  3U61 F;  1U76 A;  4CS5 A;  2IO4 B;  2HIK C;  2IZO C;  5JNE D;  1PLR A;  1GE8 A;  5IXA A;  3VKX A;  1DML A;  3LX1 A;  3G65 C;  3V60 B;  2IX2 B;  1B77 A;  4L60 A;  1YYP A;  5IY4 A;  5DA7 A;  3P91 A;  2ZVL A;  2ZVK A;  3U5Z F;  1IZ5 A;  3GGR C;  1ISQ A;  5E0U A;  1VYM A;  2IX2 A;  1RXZ A;  2AWA A;  1U7B A;  3A2F B;  1VYJ A;  3I2M X;  3A1J C;  3U60 F;  1RWZ A;  5CFK A;  2HII A;  3P83 A;  1W60 A;  3F1W A;  3GGR B;  4ZTD A;  2NTI B;  5A6D A;  5IWD A;  2IO4 A;  5E0T A;  1T6L A;  2ZVV A;  3AIZ A;  2HIK B;  4TR6 A;  2IZO B;  5B7O A;  3FDS C;  3G65 B;  3AIX B;  2NTI A;  4HK1 A;  3K4X A;  2AVT A;  2HIK A;  1UD9 A;  3TBL A;  2ZVW A;  3WGW A;  1IZ4 A;  2IX2 C;  3G65 A;  4YHR A;  3GPM A;  1AXC A;  5AUJ A;  3P87 A;  3HI8 A;  3A1J B; 
#chains in the Genus database with same CATH topology
 2HII C;  1B8H A;  2ZVM A;  3GGR A;  4D2G A;  3IFV A;  1PLQ A;  3FDS D;  5H0T A;  2IJX A;  3V61 B;  1RXM A;  2OD8 A;  4L6P A;  3GPN A;  3HSL X;  1UL1 A;  3AIZ C;  4RJF A;  3A1J A;  5E0V A;  2HII B;  5DAI A;  1CZD A;  2Z0L A;  3AIX A;  1SXJ F;  2NTI C;  3LX2 A;  5HAC A;  3V62 B;  3U61 F;  1U76 A;  4CS5 A;  2IO4 B;  2HIK C;  2IZO C;  5JNE D;  1PLR A;  1GE8 A;  5IXA A;  3VKX A;  1DML A;  3LX1 A;  3G65 C;  3V60 B;  2IX2 B;  1B77 A;  4L60 A;  1YYP A;  5IY4 A;  5DA7 A;  3P91 A;  2ZVL A;  2ZVK A;  3U5Z F;  1IZ5 A;  3GGR C;  1ISQ A;  5E0U A;  1VYM A;  2IX2 A;  1RXZ A;  2AWA A;  1U7B A;  3A2F B;  1VYJ A;  3I2M X;  3A1J C;  3U60 F;  1RWZ A;  5CFK A;  2HII A;  3P83 A;  1W60 A;  3F1W A;  3GGR B;  4ZTD A;  2NTI B;  5A6D A;  5IWD A;  2IO4 A;  5E0T A;  1T6L A;  2ZVV A;  3AIZ A;  2HIK B;  4TR6 A;  2IZO B;  5B7O A;  3FDS C;  3G65 B;  3AIX B;  2NTI A;  4HK1 A;  3K4X A;  2AVT A;  2HIK A;  1UD9 A;  3TBL A;  2ZVW A;  3WGW A;  1IZ4 A;  2IX2 C;  3G65 A;  4YHR A;  3GPM A;  1AXC A;  5AUJ A;  3P87 A;  3HI8 A;  3A1J B; 
#chains in the Genus database with same CATH homology
 2HII C;  1B8H A;  2ZVM A;  3GGR A;  4D2G A;  3IFV A;  1PLQ A;  3FDS D;  5H0T A;  2IJX A;  3V61 B;  1RXM A;  2OD8 A;  4L6P A;  3GPN A;  3HSL X;  1UL1 A;  3AIZ C;  4RJF A;  3A1J A;  5E0V A;  2HII B;  5DAI A;  1CZD A;  2Z0L A;  3AIX A;  1SXJ F;  2NTI C;  3LX2 A;  5HAC A;  3V62 B;  3U61 F;  1U76 A;  4CS5 A;  2IO4 B;  2HIK C;  2IZO C;  5JNE D;  1PLR A;  1GE8 A;  5IXA A;  3VKX A;  1DML A;  3LX1 A;  3G65 C;  3V60 B;  2IX2 B;  1B77 A;  4L60 A;  1YYP A;  5IY4 A;  5DA7 A;  3P91 A;  2ZVL A;  2ZVK A;  3U5Z F;  1IZ5 A;  3GGR C;  1ISQ A;  5E0U A;  1VYM A;  2IX2 A;  1RXZ A;  2AWA A;  1U7B A;  3A2F B;  1VYJ A;  3I2M X;  3A1J C;  3U60 F;  1RWZ A;  5CFK A;  2HII A;  3P83 A;  1W60 A;  3F1W A;  3GGR B;  4ZTD A;  2NTI B;  5A6D A;  5IWD A;  2IO4 A;  5E0T A;  1T6L A;  2ZVV A;  3AIZ A;  2HIK B;  4TR6 A;  2IZO B;  5B7O A;  3FDS C;  3G65 B;  3AIX B;  2NTI A;  4HK1 A;  3K4X A;  2AVT A;  2HIK A;  1UD9 A;  3TBL A;  2ZVW A;  3WGW A;  1IZ4 A;  2IX2 C;  3G65 A;  4YHR A;  3GPM A;  1AXC A;  5AUJ A;  3P87 A;  3HI8 A;  3A1J B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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