The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
52
|
sequence length |
247
|
structure length |
247
|
Chain Sequence |
PFEIVFEGAKEFAQLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLKKILKRGKAKDTLILKKGEENFLEITIQGTATRTFRVPLIDVEEMEVDLPELPFTAKVVVLGEVLKAAVKAASLVSDSIKFIARENEFIMKAEGETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLTFLLAPRVE
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural determinant for switching between the polymerase and exonuclease modes in the PCNA-replicative DNA polymerase complex
rcsb |
| molecule tags |
Transferase/replication
|
| source organism |
Pyrococcus furiosus
|
| molecule keywords |
DNA polymerase
|
| total genus |
52
|
| structure length |
247
|
| sequence length |
247
|
| ec nomenclature | |
| pdb deposition date | 2009-05-15 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| B | PF00705 | PCNA_N | Proliferating cell nuclear antigen, N-terminal domain |
| B | PF02747 | PCNA_C | Proliferating cell nuclear antigen, C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | Box | Proliferating Cell Nuclear Antigen | Proliferating Cell Nuclear Antigen |
#chains in the Genus database with same CATH superfamily 3GPM A; 1W60 A; 2IO4 B; 3V62 B; 1T6L A; 5IY4 A; 3K4X A; 1U7B A; 3GPN A; 3FDS D; 2IX2 C; 3LX2 A; 2ZVM A; 4HK1 A; 2IZO B; 1YYP A; 4ZTD A; 2IX2 A; 3A2F B; 1SXJ F; 1PLQ A; 1U76 A; 2HIK C; 2ZVL A; 3G65 A; 3GGR B; 1PLR A; 4YHR A; 3U5Z F; 3P91 A; 1IZ5 A; 5B7O A; 3V61 B; 2HII A; 3VKX A; 1RWZ A; 2HIK A; 3FDS C; 2AVT A; 5IWD A; 5E0V A; 1B8H A; 1RXM A; 3A1J B; 1GE8 A; 2NTI C; 1IZ4 A; 5HAC A; 1AXC A; 3WGW A; 3HSL X; 2ZVW A; 3AIX A; 3IFV A; 3V60 B; 2NTI A; 2AWA A; 4L6P A; 3G65 B; 1UD9 A; 1CZD A; 5H0T A; 3AIZ C; 4TR6 A; 3U60 F; 1B77 A; 3P83 A; 3F1W A; 3GGR C; 3P87 A; 2HII B; 2ZVV A; 5AUJ A; 4D2G A; 1ISQ A; 1UL1 A; 1VYM A; 5A6D A; 3LX1 A; 4CS5 A; 5CFK A; 3U61 F; 3GGR A; 2IO4 A; 2ZVK A; 3I2M X; 5JNE D; 2IX2 B; 3A1J C; 2IZO C; 3AIX B; 5IXA A; 3TBL A; 2NTI B; 2Z0L A; 2IJX A; 1VYJ A; 3A1J A; 1RXZ A; 3G65 C; 2HIK B; 2OD8 A; 3AIZ A; 4L60 A; 5E0U A; 5DA7 A; 3HI8 A; 2HII C; 1DML A; 4RJF A; 5DAI A; 5E0T A; #chains in the Genus database with same CATH topology 3GPM A; 1W60 A; 2IO4 B; 3V62 B; 1T6L A; 5IY4 A; 3K4X A; 1U7B A; 3GPN A; 3FDS D; 2IX2 C; 3LX2 A; 2ZVM A; 4HK1 A; 2IZO B; 1YYP A; 4ZTD A; 2IX2 A; 3A2F B; 1SXJ F; 1PLQ A; 1U76 A; 2HIK C; 2ZVL A; 3G65 A; 3GGR B; 1PLR A; 4YHR A; 3U5Z F; 3P91 A; 1IZ5 A; 5B7O A; 3V61 B; 2HII A; 3VKX A; 1RWZ A; 2HIK A; 3FDS C; 2AVT A; 5IWD A; 5E0V A; 1B8H A; 1RXM A; 3A1J B; 1GE8 A; 2NTI C; 1IZ4 A; 5HAC A; 1AXC A; 3WGW A; 3HSL X; 2ZVW A; 3AIX A; 3IFV A; 3V60 B; 2NTI A; 2AWA A; 4L6P A; 3G65 B; 1UD9 A; 1CZD A; 5H0T A; 3AIZ C; 4TR6 A; 3U60 F; 1B77 A; 3P83 A; 3F1W A; 3GGR C; 3P87 A; 2HII B; 2ZVV A; 5AUJ A; 4D2G A; 1ISQ A; 1UL1 A; 1VYM A; 5A6D A; 3LX1 A; 4CS5 A; 5CFK A; 3U61 F; 3GGR A; 2IO4 A; 2ZVK A; 3I2M X; 5JNE D; 2IX2 B; 3A1J C; 2IZO C; 3AIX B; 5IXA A; 3TBL A; 2NTI B; 2Z0L A; 2IJX A; 1VYJ A; 3A1J A; 1RXZ A; 3G65 C; 2HIK B; 2OD8 A; 3AIZ A; 4L60 A; 5E0U A; 5DA7 A; 3HI8 A; 2HII C; 1DML A; 4RJF A; 5DAI A; 5E0T A; #chains in the Genus database with same CATH homology 3GPM A; 1W60 A; 2IO4 B; 3V62 B; 1T6L A; 5IY4 A; 3K4X A; 1U7B A; 3GPN A; 3FDS D; 2IX2 C; 3LX2 A; 2ZVM A; 4HK1 A; 2IZO B; 1YYP A; 4ZTD A; 2IX2 A; 3A2F B; 1SXJ F; 1PLQ A; 1U76 A; 2HIK C; 2ZVL A; 3G65 A; 3GGR B; 1PLR A; 4YHR A; 3U5Z F; 3P91 A; 1IZ5 A; 5B7O A; 3V61 B; 2HII A; 3VKX A; 1RWZ A; 2HIK A; 3FDS C; 2AVT A; 5IWD A; 5E0V A; 1B8H A; 1RXM A; 3A1J B; 1GE8 A; 2NTI C; 1IZ4 A; 5HAC A; 1AXC A; 3WGW A; 3HSL X; 2ZVW A; 3AIX A; 3IFV A; 3V60 B; 2NTI A; 2AWA A; 4L6P A; 3G65 B; 1UD9 A; 1CZD A; 5H0T A; 3AIZ C; 4TR6 A; 3U60 F; 1B77 A; 3P83 A; 3F1W A; 3GGR C; 3P87 A; 2HII B; 2ZVV A; 5AUJ A; 4D2G A; 1ISQ A; 1UL1 A; 1VYM A; 5A6D A; 3LX1 A; 4CS5 A; 5CFK A; 3U61 F; 3GGR A; 2IO4 A; 2ZVK A; 3I2M X; 5JNE D; 2IX2 B; 3A1J C; 2IZO C; 3AIX B; 5IXA A; 3TBL A; 2NTI B; 2Z0L A; 2IJX A; 1VYJ A; 3A1J A; 1RXZ A; 3G65 C; 2HIK B; 2OD8 A; 3AIZ A; 4L60 A; 5E0U A; 5DA7 A; 3HI8 A; 2HII C; 1DML A; 4RJF A; 5DAI A; 5E0T A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
